RchiOBHm_Chr5g0019111

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000360
Physical Location & Seq
Forward (+)
13580801 .. 13582588
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29925

Sequence Viewer

Length: 1788 bp
ATGTTGAGCAGCTTTAGATTCCTCTACCTCGGCCTTTCGCCTTTTGATGAGTTTTGTTTTCGTGTACAGAACATTTGCTCCATCTGCTGGAGTAACTTGACAAACGGGCAAGGCCAAGCCATCTTCACTGCCGAGTGCTCACACTCTTTCCACTACCATTGCATTGCCAACAATGTCCAGCATGGAAATCTTTGCTGCCCTGCCTGCAGAGCAAAATGGAATAAAAATAATTTACCTTTCCAAGTTCCCCCTCTTCAACAAAATAACAAGAGTAAACATGGCTTCGCCGATGATGAACCTCTCTCGTCCGCCACACTCCTCAAAACTTCTGGCCCCCAGAATGTAACAGTCAAGACTCATACAGAGACCTCTGCTATCTCTGCTGCCGAATCACGCCCCCATTATCCTGTTCTAGTTAGCATTTGTGCACCACCCCTTCAAGATCCCGATGGTGAAGGCCGTACACCCATTGACCTTGTTACAATTCTGGACGTAAGCGGTAGCATGCTTGGCCAAAAGCTTGAACTTGTCAAGCAAGCTGTCAAATTCGTCATTGAAAACATGGGGACTTCGGACAGACTGTCTATAGTATCATTCTCAACAACTTCTAAACGACTCCTTCCTCTCCGTAGAATGACTGTTAAGGGCCGTGAAAGTGCAATCCAAGCTGTCGAATCTCTTAGAGCAGATGGTGGAACTGACATTGCAGAAGGACTCAAGATAGGAACTCATATCCTTGAGGAGCGAAGGGAAAGGAACCCTGTTGCTAGCATCATCCTCTTATCGGATGGCCAAGATAACCACTGTGACAACCCAAGCCAAATGTTGAAGAAATTGCCTGCTTCAATTCGTTCTAGTGACATGCAACATGAAATCCCAGTCCACACATTTGGGTTTGGCAACGACCATGATGCAAAGATTATGCATGCTATATCTAATGTATCAGGGGGAACGTTTTCGTACATTGAATCAGTTGGCATAATACAAGACGCTTTTGCTCTGTGCATTGGTGGTCTTCTCAGTGTTGTGGCTCAGGAACTTCGCTTCACGGTGAGGTCAGCATCACCTGGGGTGAAGATCGTGGAAATACCATCAGGGAGACATGTCAGTCAGATTTCTGATGAGCAAGGTGTTGTTGATGTTGGAAATATGTATGCAGAAGAGGAGAAACAGTTTCTGGTGTACCTCTCAGTTCCACAATCCGCAGCTCCAGATACCAAGACGTCTTTGGTAGACGTTTTATGCGTGTACAAAGATCTTGGTTCAGATGAGTTTATCCCGGTCCAAGGTGAGAAAGTAGAGATAACGAGACCTGATTTTTGTTCTCCTGCAGAAATGGCAGTGTCTTTGGAGGTTGATCGGCAGCGGAACAGACTTTTGGTGGCTGATGCTATTGGAGAGGCACAAAGGTTGGCTGAAATGGGCAATCTGGAGGCTGCACGGGCGGTTTTGACTCAGCGAAGAGAAACTCTCATGACATCAACAGCAGCCAAAGCTGGGGATGATCTGAGTCATATGTTTGAAACTGAGCTTAAACAAATCATGGATAAAATGGCAAGTATGAATTTGTATGAAGAGGTGGGGCGTGCTTACGCTCTCTCAGGGATGAGTTCCCATGCACGGCAGAGGGCCTCGGCTAGGGGTAACGCAGCAGGCTCGTGCCTGGCCGACAAGGCAGGTCGCAAACAACTTGCTACTAAAGCAGCGGGTCGTGCTACTTTTGAAACACCCGCTATGGTTAGAATGGTAAGAAAATCACAGAATAAGAGGAAGTCTGGTTCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

595

Amino Acids

64.9

Weight (kDa)

6.97

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 25 - 70 1.5e-06 Ring finger domain
zf-RING_11 PF17123 26 - 55 2.3e-09 RING-like zinc finger
VWA PF00092 158 - 324 1.4e-22 von Willebrand factor type A domain
VWA_3 PF13768 158 - 319 9.2e-19 von Willebrand factor type A domain
VWA_2 PF13519 159 - 265 2.5e-18 von Willebrand factor type A domain
Vwaint PF14624 507 - 587 1.1e-11 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1107
AatII GACGTC 1 cut(s) 1226
Acc36I ACCTGC 1 cut(s) 1667
AccB7I CCANNNNNTGG 1 cut(s) 87
AccI GTMKAC 1 cut(s) 1233
AciI CCGC 7 cut(s) 309, 498, 1203, 1366, 1445, 1706, 1731
AclI AACGTT 1 cut(s) 953
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 3 cut(s) 511, 790, 1665
AcsI RAATTY 2 cut(s) 545, 1564
AcyI GRCGYC 1 cut(s) 1223
AfaI GTAC 5 cut(s) 66, 463, 962, 1184, 1250
AfiI CCNNNNNNNGG 6 cut(s) 87, 784, 1286, 1497, 1620, 1638
AflIII ACRYGT 1 cut(s) 1102
AgsI TTSAA 9 cut(s) 257, 440, 524, 557, 829, 846, 968, 1523, 1724
AhdI GACNNNNNGTC 1 cut(s) 580
AjnI CCWGG 2 cut(s) 1066, 1662
AjuI GAANNNNNNNTTGG 2 cut(s) 1361, 1393
AloI GAACNNNNNNTCC 3 cut(s) 62, 94, 1762
AluBI AGCT 7 cut(s) 12, 520, 539, 668, 1208, 1496, 1531
AluI AGCT 7 cut(s) 12, 520, 539, 668, 1208, 1496, 1531
Alw21I GWGCWC 2 cut(s) 140, 430
Alw26I GTCTC 3 cut(s) 359, 1093, 1303
Alw44I GTGCAC 1 cut(s) 426
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 1177
AoxI GGCC 9 cut(s) 31, 112, 331, 457, 511, 646, 790, 1629, 1665
ApaLI GTGCAC 1 cut(s) 426
ApeKI GCWGC 9 cut(s) 9, 195, 383, 1205, 1363, 1436, 1487, 1649, 1703
ApoI RAATTY 2 cut(s) 545, 1564
ArsI GACNNNNNNTTYG 2 cut(s) 1302, 1334
Asp700I GAANNNNTTC 1 cut(s) 955
AspS9I GGNCC 4 cut(s) 332, 646, 1282, 1629
AsuC2I CCSGG 1 cut(s) 1280
AsuHPI GGTGA 5 cut(s) 464, 1056, 1063, 1084, 1301
AsuNHI GCTAGC 1 cut(s) 767
AvaII GGWCC 1 cut(s) 1282
BaeGI GKGCMC 1 cut(s) 430
BalI TGGCCA 2 cut(s) 513, 792
BauI CACGAG 1 cut(s) 1657
BbsI GAAGAC 1 cut(s) 1007
Bbv12I GWGCWC 2 cut(s) 140, 430
BbvI GCAGC 9 cut(s) 21, 182, 370, 1217, 1375, 1423, 1499, 1661, 1715
BccI CCATC 6 cut(s) 89, 128, 443, 683, 782, 1099
BceAI ACGGC 3 cut(s) 444, 633, 1637
BcgI CGANNNNNNTGC 4 cut(s) 893, 927, 1638, 1672
BciT130I CCWGG 2 cut(s) 1068, 1664
BcnI CCSGG 1 cut(s) 1280
BcoDI GTCTC 3 cut(s) 359, 1093, 1303
BfaI CTAG 4 cut(s) 413, 768, 855, 1638
BfmI CTRYAG 3 cut(s) 205, 585, 1329
BfuAI ACCTGC 1 cut(s) 1667
BglI GCCNNNNNGGC 1 cut(s) 1673
BglII AGATCT 1 cut(s) 1255
BisI GCNGC 9 cut(s) 10, 196, 384, 1206, 1364, 1437, 1488, 1650, 1704
BlsI GCNGC 9 cut(s) 11, 197, 385, 1207, 1365, 1438, 1489, 1651, 1705
Bme1390I CCNGG 3 cut(s) 1068, 1280, 1664
Bme18I GGWCC 1 cut(s) 1282
BmeRI GACNNNNNGTC 1 cut(s) 580
BmgT120I GGNCC 4 cut(s) 332, 646, 1282, 1629
BmiI GGNNCC 2 cut(s) 334, 758
BmrFI CCNGG 3 cut(s) 1068, 1280, 1664
BmrI ACTGGG 1 cut(s) 872
BmsI GCATC 4 cut(s) 780, 901, 1070, 1378
BmtI GCTAGC 1 cut(s) 771
BmuI ACTGGG 1 cut(s) 872
BpiI GAAGAC 1 cut(s) 1007
BplI GAGNNNNNCTC 2 cut(s) 1455, 1487
BpmI CTGGAG 3 cut(s) 109, 1194, 1451
Bpu10I CCTNAGC 1 cut(s) 1032
BpuEI CTTGAG 2 cut(s) 701, 758
BpuMI CCSGG 1 cut(s) 1280
BsaHI GRCGYC 1 cut(s) 1223
BsaI GGTCTC 2 cut(s) 359, 1303
BsaJI CCNNGG 4 cut(s) 28, 1067, 1285, 1632
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 1157, 1187
Bsc4I CCNNNNNNNGG 6 cut(s) 87, 784, 1286, 1497, 1620, 1638
Bse1I ACTGG 1 cut(s) 878
Bse3DI GCAATG 3 cut(s) 157, 162, 702
BseBI CCWGG 2 cut(s) 1068, 1664
BseDI CCNNGG 4 cut(s) 28, 1067, 1285, 1632
BseGI GGATG 4 cut(s) 774, 793, 1507, 1611
BseLI CCNNNNNNNGG 6 cut(s) 87, 784, 1286, 1497, 1620, 1638
BseMI GCAATG 3 cut(s) 157, 162, 702
BseMII CTCAG 7 cut(s) 1033, 1046, 1203, 1469, 1499, 1518, 1614
BseNI ACTGG 1 cut(s) 878
BseRI GAGGAG 3 cut(s) 308, 755, 1178
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 9 cut(s) 21, 182, 370, 1217, 1375, 1423, 1499, 1661, 1715
BseYI CCCAGC 1 cut(s) 1496
BsgI GTGCAG 1 cut(s) 1422
BshFI GGCC 9 cut(s) 33, 114, 333, 459, 513, 648, 792, 1631, 1667
BsiHKAI GWGCWC 2 cut(s) 140, 430
BsiSI CCGG 1 cut(s) 1280
BslFI GGGAC 1 cut(s) 580
BslI CCNNNNNNNGG 6 cut(s) 87, 784, 1286, 1497, 1620, 1638
BsmAI GTCTC 3 cut(s) 359, 1093, 1303
BsmFI GGGAC 1 cut(s) 580
BsnI GGCC 9 cut(s) 33, 114, 333, 459, 513, 648, 792, 1631, 1667
Bso31I GGTCTC 2 cut(s) 359, 1303
Bsp1286I GDGCHC 2 cut(s) 140, 430
Bsp1407I TGTACA 2 cut(s) 64, 1248
Bsp143I GATC 5 cut(s) 442, 1077, 1255, 1357, 1504
BspACI CCGC 7 cut(s) 309, 498, 1203, 1366, 1445, 1706, 1731
BspANI GGCC 9 cut(s) 33, 114, 333, 459, 513, 648, 792, 1631, 1667
BspCNI CTCAG 7 cut(s) 1032, 1045, 1202, 1468, 1500, 1519, 1613
BspHI TCATGA 1 cut(s) 1473
BspLI GGNNCC 2 cut(s) 334, 758
BspMAI CTGCAG 2 cut(s) 209, 1333
BspMI ACCTGC 1 cut(s) 1667
BspOI GCTAGC 1 cut(s) 771
BspPI GGATC 1 cut(s) 437
BspTNI GGTCTC 2 cut(s) 359, 1303
BsrDI GCAATG 3 cut(s) 157, 162, 702
BsrGI TGTACA 2 cut(s) 64, 1248
BsrI ACTGG 1 cut(s) 878
BssECI CCNNGG 4 cut(s) 28, 1067, 1285, 1632
BssMI GATC 5 cut(s) 442, 1077, 1255, 1357, 1504
BssNI GRCGYC 1 cut(s) 1223
BssSI CACGAG 1 cut(s) 1657
BssT1I CCWWGG 1 cut(s) 1285
Bst2BI CACGAG 1 cut(s) 1657
Bst2UI CCWGG 2 cut(s) 1068, 1664
Bst4CI ACNGT 6 cut(s) 349, 582, 640, 806, 1051, 1173
Bst6I CTCTTC 4 cut(s) 258, 1155, 1456, 1569
BstACI GRCGYC 1 cut(s) 1223
BstAUI TGTACA 2 cut(s) 64, 1248
BstC8I GCNNGC 8 cut(s) 205, 506, 537, 769, 840, 927, 1587, 1654
BstDEI CTNAG 8 cut(s) 680, 1019, 1032, 1189, 1455, 1508, 1527, 1600
BstENI CCTNNNNNAGG 1 cut(s) 1636
BstF5I GGATG 4 cut(s) 774, 793, 1507, 1611
BstKTI GATC 5 cut(s) 445, 1080, 1258, 1360, 1507
BstMAI GTCTC 3 cut(s) 359, 1093, 1303
BstMBI GATC 5 cut(s) 442, 1077, 1255, 1357, 1504
BstNI CCWGG 2 cut(s) 1068, 1664
BstNSI RCATGY 4 cut(s) 508, 865, 929, 1106
BstSCI CCNGG 3 cut(s) 1066, 1278, 1662
BstSFI CTRYAG 3 cut(s) 205, 585, 1329
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 9 cut(s) 21, 182, 370, 1217, 1375, 1423, 1499, 1661, 1715
BstV2I GAAGAC 1 cut(s) 1007
BstX2I RGATCY 2 cut(s) 442, 1255
BstXI CCANNNNNNTGG 1 cut(s) 890
BstYI RGATCY 2 cut(s) 442, 1255
BsuRI GGCC 9 cut(s) 33, 114, 333, 459, 513, 648, 792, 1631, 1667
BtsCI GGATG 4 cut(s) 774, 793, 1507, 1611
BtsI GCAGTG 2 cut(s) 126, 1347
BtsIMutI CAGTG 4 cut(s) 126, 802, 1027, 1347
BveI ACCTGC 1 cut(s) 1667
Cac8I GCNNGC 8 cut(s) 205, 506, 537, 769, 840, 927, 1587, 1654
CaiI CAGNNNCTG 1 cut(s) 1177
CciI TCATGA 1 cut(s) 1473
Cfr13I GGNCC 4 cut(s) 332, 646, 1282, 1629
CseI GACGC 1 cut(s) 998
Csp6I GTAC 5 cut(s) 65, 462, 961, 1183, 1249
CspCI CAANNNNNGTGG 2 cut(s) 140, 175
CviQI GTAC 5 cut(s) 65, 462, 961, 1183, 1249
DdeI CTNAG 8 cut(s) 680, 1019, 1032, 1189, 1455, 1508, 1527, 1600
DpnI GATC 5 cut(s) 444, 1079, 1257, 1359, 1506
DpnII GATC 5 cut(s) 442, 1077, 1255, 1357, 1504
DrdI GACNNNNNNGTC 1 cut(s) 1107
DriI GACNNNNNGTC 1 cut(s) 580
DseDI GACNNNNNNGTC 1 cut(s) 1107
EaeI YGGCCR 3 cut(s) 511, 790, 1665
Eam1104I CTCTTC 4 cut(s) 258, 1155, 1456, 1569
Eam1105I GACNNNNNGTC 1 cut(s) 580
EarI CTCTTC 4 cut(s) 258, 1155, 1456, 1569
EciI GGCGGA 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 1285
Eco31I GGTCTC 2 cut(s) 359, 1303
Eco47I GGWCC 1 cut(s) 1282
EcoNI CCTNNNNNAGG 1 cut(s) 1636
EcoO109I RGGNCCY 1 cut(s) 1629
EcoRII CCWGG 2 cut(s) 1066, 1662
EcoT14I CCWWGG 1 cut(s) 1285
EcoT22I ATGCAT 1 cut(s) 927
ErhI CCWWGG 1 cut(s) 1285
FaqI GGGAC 1 cut(s) 580
FauI CCCGC 2 cut(s) 1699, 1738
FauNDI CATATG 1 cut(s) 1515
FblI GTMKAC 1 cut(s) 1233
Fnu4HI GCNGC 9 cut(s) 10, 196, 384, 1206, 1364, 1437, 1488, 1650, 1704
FokI GGATG 4 cut(s) 761, 800, 1514, 1618
Fsp4HI GCNGC 9 cut(s) 10, 196, 384, 1206, 1364, 1437, 1488, 1650, 1704
FspBI CTAG 4 cut(s) 413, 768, 855, 1638
GluI GCNGC 9 cut(s) 10, 196, 384, 1206, 1364, 1437, 1488, 1650, 1704
GsaI CCCAGC 1 cut(s) 1500
GsuI CTGGAG 3 cut(s) 109, 1194, 1451
HaeIII GGCC 9 cut(s) 33, 114, 333, 459, 513, 648, 792, 1631, 1667
HapII CCGG 1 cut(s) 1280
HgaI GACGC 1 cut(s) 998
Hin1I GRCGYC 1 cut(s) 1223
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 9 cut(s) 18, 355, 389, 615, 674, 714, 968, 1453, 1510
HpaII CCGG 1 cut(s) 1280
HphI GGTGA 5 cut(s) 464, 1056, 1063, 1084, 1301
Hpy166II GTNNAC 8 cut(s) 65, 275, 428, 464, 883, 1183, 1234, 1249
Hpy188I TCNGA 6 cut(s) 574, 787, 1113, 1120, 1267, 1509
Hpy188III TCNNGA 9 cut(s) 352, 440, 446, 488, 718, 1034, 1211, 1430, 1474
Hpy8I GTNNAC 8 cut(s) 65, 275, 428, 464, 883, 1183, 1234, 1249
HpyAV CCTTC 5 cut(s) 446, 449, 629, 704, 741
HpyCH4III ACNGT 6 cut(s) 349, 582, 640, 806, 1051, 1173
HpyCH4IV ACGT 4 cut(s) 492, 953, 1223, 1236
HpyF3I CTNAG 8 cut(s) 680, 1019, 1032, 1189, 1455, 1508, 1527, 1600
HpySE526I ACGT 4 cut(s) 492, 953, 1223, 1236
Hsp92I GRCGYC 1 cut(s) 1223
Kzo9I GATC 5 cut(s) 442, 1077, 1255, 1357, 1504
LmnI GCTCC 3 cut(s) 83, 742, 1213
Lsp1109I GCAGC 9 cut(s) 21, 182, 370, 1217, 1375, 1423, 1499, 1661, 1715
LweI GCATC 4 cut(s) 780, 901, 1070, 1378
MaeI CTAG 4 cut(s) 413, 768, 855, 1638
MaeII ACGT 4 cut(s) 492, 953, 1223, 1236
MaeIII GTNAC 6 cut(s) 92, 343, 478, 806, 857, 1643
MalI GATC 5 cut(s) 444, 1079, 1257, 1359, 1506
MboI GATC 5 cut(s) 442, 1077, 1255, 1357, 1504
MboII GAAGA 8 cut(s) 115, 245, 841, 1007, 1087, 1172, 1473, 1586
MflI RGATCY 2 cut(s) 442, 1255
MhlI GDGCHC 2 cut(s) 140, 430
MlsI TGGCCA 2 cut(s) 513, 792
MluCI AATT 6 cut(s) 229, 483, 545, 833, 846, 1564
MluNI TGGCCA 2 cut(s) 513, 792
MlyI GAGTC 5 cut(s) 349, 609, 708, 1447, 1519
MmeI TCCRAC 1 cut(s) 1123
Mox20I TGGCCA 2 cut(s) 513, 792
Mph1103I ATGCAT 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 955
MscI TGGCCA 2 cut(s) 513, 792
MseI TTAA 2 cut(s) 642, 1533
Msp20I TGGCCA 2 cut(s) 513, 792
MspA1I CMGCKG 2 cut(s) 1366, 1706
MspI CCGG 1 cut(s) 1280
MspR9I CCNGG 3 cut(s) 1068, 1280, 1664
MvaI CCWGG 2 cut(s) 1068, 1664
NciI CCSGG 1 cut(s) 1280
NdeI CATATG 1 cut(s) 1515
NdeII GATC 5 cut(s) 442, 1077, 1255, 1357, 1504
NheI GCTAGC 1 cut(s) 767
NlaIV GGNNCC 2 cut(s) 334, 758
NmeAIII GCCGAG 3 cut(s) 9, 157, 1613
NmuCI GTSAC 2 cut(s) 806, 857
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 4 cut(s) 508, 865, 929, 1106
PaeI GCATGC 2 cut(s) 508, 929
PagI TCATGA 1 cut(s) 1473
PciI ACATGT 1 cut(s) 1102
PcsI WCGNNNNNNNCGW 1 cut(s) 1242
PdmI GAANNNNTTC 1 cut(s) 955
PfeI GAWTC 4 cut(s) 18, 389, 674, 968
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 9 cut(s) 11, 197, 385, 1207, 1365, 1438, 1489, 1651, 1705
PleI GAGTC 5 cut(s) 349, 609, 708, 1447, 1518
PpsI GAGTC 5 cut(s) 349, 609, 708, 1447, 1518
PscI ACATGT 1 cut(s) 1102
Psp1406I AACGTT 1 cut(s) 953
Psp6I CCWGG 2 cut(s) 1066, 1662
PspFI CCCAGC 1 cut(s) 1496
PspGI CCWGG 2 cut(s) 1066, 1662
PspN4I GGNNCC 2 cut(s) 334, 758
PspPI GGNCC 4 cut(s) 332, 646, 1282, 1629
PstI CTGCAG 2 cut(s) 209, 1333
PstNI CAGNNNCTG 1 cut(s) 1177
PsuI RGATCY 2 cut(s) 442, 1255
RsaI GTAC 5 cut(s) 66, 463, 962, 1184, 1250
RsaNI GTAC 5 cut(s) 65, 462, 961, 1183, 1249
SaqAI TTAA 2 cut(s) 642, 1533
SatI GCNGC 9 cut(s) 10, 196, 384, 1206, 1364, 1437, 1488, 1650, 1704
Sau3AI GATC 5 cut(s) 442, 1077, 1255, 1357, 1504
Sau96I GGNCC 4 cut(s) 332, 646, 1282, 1629
SchI GAGTC 5 cut(s) 349, 609, 708, 1447, 1519
ScrFI CCNGG 3 cut(s) 1068, 1280, 1664
SduI GDGCHC 2 cut(s) 140, 430
SfaNI GCATC 4 cut(s) 780, 901, 1070, 1378
SfcI CTRYAG 3 cut(s) 205, 585, 1329
SinI GGWCC 1 cut(s) 1282
SmlI CTYRAG 2 cut(s) 716, 737
SmoI CTYRAG 2 cut(s) 716, 737
SphI GCATGC 2 cut(s) 508, 929
Sse9I AATT 6 cut(s) 229, 483, 545, 833, 846, 1564
SsiI CCGC 7 cut(s) 309, 498, 1203, 1366, 1445, 1706, 1731
SspMI CTAG 4 cut(s) 413, 768, 855, 1638
StyD4I CCNGG 3 cut(s) 1066, 1278, 1662
StyI CCWWGG 1 cut(s) 1285
TaaI ACNGT 6 cut(s) 349, 582, 640, 806, 1051, 1173
TaiI ACGT 4 cut(s) 495, 956, 1226, 1239
TaqI TCGA 1 cut(s) 672
TasI AATT 6 cut(s) 229, 483, 545, 833, 846, 1564
TatI WGTACW 2 cut(s) 64, 1248
TfiI GAWTC 4 cut(s) 18, 389, 674, 968
Tru1I TTAA 2 cut(s) 642, 1533
Tru9I TTAA 2 cut(s) 642, 1533
TscAI CASTG 4 cut(s) 133, 809, 1027, 1347
TseFI GTSAC 2 cut(s) 806, 857
TseI GCWGC 9 cut(s) 9, 195, 383, 1205, 1363, 1436, 1487, 1649, 1703
Tsp45I GTSAC 2 cut(s) 806, 857
TspDTI ATGAA 4 cut(s) 309, 885, 1577, 1587
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 4 cut(s) 133, 809, 1027, 1347
Van91I CCANNNNNTGG 1 cut(s) 87
VneI GTGCAC 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 1282
XagI CCTNNNNNAGG 1 cut(s) 1636
XapI RAATTY 2 cut(s) 545, 1564
XceI RCATGY 4 cut(s) 508, 865, 929, 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 1225
XmiI GTMKAC 1 cut(s) 1233
XmnI GAANNNNTTC 1 cut(s) 955
XspI CTAG 4 cut(s) 413, 768, 855, 1638
ZraI GACGTC 1 cut(s) 1224
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.