Rroxscaffold_1G00058810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000360
Physical Location & Seq
Reverse (-)
80769137 .. 80777858
8722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058810.1

Sequence Viewer

Length: 264 bp
ATGAGGGGTGTCCATTCCTGTGTTGGTCATGATGCCTCCGGGGCAAATGCTTCATCAGTTGACGCCCCAGCTGATTCTTCTGCTCCAGTTGGTGCTTTTGAAACACATGCTATGGTCAGAATGACAAGCATGCTGCAGCCATTTAGGTTATCAAGTTCATTTTCCTTTGAGCATTCACACTACAATTATTGTGTAGTAGTGTTTCATGAAGAAAATTTACAAGAATCTGATCCAAAGGGGAGAGTGTTAAGAGTTTCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.47

Weight (kDa)

6.01

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 63
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 133, 136
ApoI RAATTY 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 40
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbvI GCAGC 2 cut(s) 120, 148
BcnI CCSGG 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 2 cut(s) 134, 137
BlsI GCNGC 2 cut(s) 135, 138
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 120, 148
BseYI CCCAGC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 39
BsmI GAATGC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 229
BspHI TCATGA 2 cut(s) 28, 205
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 110, 133
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 120, 148
Cac8I GCNNGC 1 cut(s) 131
CciI TCATGA 2 cut(s) 28, 205
CseI GACGC 1 cut(s) 71
CviAII CATG 4 cut(s) 29, 107, 130, 206
CviJI RGCY 2 cut(s) 71, 139
CviKI_1 RGCY 2 cut(s) 71, 139
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
FaeI CATG 4 cut(s) 32, 110, 133, 209
FaiI YATR 5 cut(s) 30, 108, 113, 131, 207
FatI CATG 4 cut(s) 28, 106, 129, 205
Fnu4HI GCNGC 2 cut(s) 134, 137
Fsp4HI GCNGC 2 cut(s) 134, 137
GluI GCNGC 2 cut(s) 134, 137
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 69
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 4 cut(s) 32, 110, 133, 209
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 2 cut(s) 74, 224
HpaII CCGG 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 119, 229
Hpy188III TCNNGA 2 cut(s) 29, 206
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 4 cut(s) 32, 110, 133, 209
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 31, 52, 81, 99
Lsp1109I GCAGC 2 cut(s) 120, 148
LweI GCATC 1 cut(s) 22
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 69, 221
MluCI AATT 2 cut(s) 184, 214
MnlI CCTC 1 cut(s) 46
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 40
NdeII GATC 1 cut(s) 229
NlaIII CATG 4 cut(s) 32, 110, 133, 209
NspI RCATGY 2 cut(s) 110, 133
PaeI GCATGC 1 cut(s) 133
PagI TCATGA 2 cut(s) 28, 205
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 74, 224
PkrI GCNGC 2 cut(s) 135, 138
PspFI CCCAGC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 134, 137
Sau3AI GATC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 40
SetI ASST 2 cut(s) 73, 149
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 18
SphI GCATGC 1 cut(s) 133
Sse9I AATT 2 cut(s) 184, 214
StyD4I CCNGG 1 cut(s) 38
TasI AATT 2 cut(s) 184, 214
TfiI GAWTC 2 cut(s) 74, 224
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseI GCWGC 2 cut(s) 133, 136
TspDTI ATGAA 5 cut(s) 42, 147, 194, 222, 246
XapI RAATTY 1 cut(s) 214
XceI RCATGY 2 cut(s) 110, 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.