FvH4_3g11691

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000360
Physical Location & Seq
Forward (+)
6896940 .. 6898950
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11691.t1

Sequence Viewer

Length: 981 bp
ATGTCTTCTCAGTCTGCATCTGATCAAAACAACTGTGGCATCTGTCTGAGTAGCATGGCAGCCCCAAAAGGCCAAAAATTATTCACTGCTCAATGCTCCCACTCCTTCCACTACCCTTGCATTGTCCAGAATGTTCAGCATGGAAATCTTTGTTGCCCCATTTGCCGAGCAATATGGGATAAGCAAAATGTTCCTTTCCAACCAAACAACTGGACTAGTACTTTTCCCCCTCAACATAACAACTCAGGTGATCCCCCTCACCCCTGGGGTGTTAATTTCCCTCAGCATAATAACTTGGGTGGGAACTCTCCCAACATCTCATTCTCATTCCAACCACGACAGCCACCCCATCCGACTTATCATCAGTACTCATATCAGCAACCCAGTTGGAACTATCCTTCCTTCCCATTCATGCAGCAACACCAAGCCTTTCCCGAGCCAGCTAGCTTCTCTGATGATGAACCTCTTTTGTCCACCTCACCAATGCAATCCAATGACCGCCAGGGAGTAACAATTAAGACTCAGACCGAGTCCTTGGCTATCTCAGCTGCAGAATCTCATCCGCGATATCCTGTTCTTGTCAGCATTTGTGCACCATCTCTTCAAGATACTGATGGCCAGGGGCGTACCCCCATCGACCTTGTGACAGTTCTGGATGTAAGTGGCAGGATGTGTGGCCTAAAGCTTGACCTTGTGAAGCGCGCTGTCAAATTTGTCATACAAAACTTGGGGGATTCGGACCGGCTTTCTATAGTTACTTTCTCCACAACTGCTAGAAGACTCTTTCCCCTCAAAAGAATGTCTGTTGAAGGCCGTGAAAGTGCAACCCTAGCAGTCGAATCTCTTACAGCAGTTGGTGGAACTGACATTGCAAAAGGACTCATCACAGGAACTAGGGTCCTTGAAGGAAGAAAGGAAAGGAACCCAGTGGCTAGCATCATGTGTTGGAATGGACTTAGCATGTTGAGTCCTAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA VWA_3 Vwaint zf-RING_11

Protein Analysis

327

Amino Acids

35.85

Weight (kDa)

8.32

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 10 - 56 7.5e-07 Ring finger domain
zf-RING_11 PF17123 11 - 41 5.9e-10 RING-like zinc finger
zf-C3HC4 PF00097 12 - 55 1.7e-06 Zinc finger, C3HC4 type (RING finger)
VWA PF00092 213 - 306 4.9e-12 von Willebrand factor type A domain
VWA_3 PF13768 213 - 294 6.2e-11 von Willebrand factor type A domain
VWA_2 PF13519 214 - 312 4.4e-12 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 565, 702
AciI CCGC 2 cut(s) 499, 563
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 1 cut(s) 710
AfaI GTAC 3 cut(s) 220, 368, 628
AgsI TTSAA 3 cut(s) 605, 809, 905
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 3 cut(s) 263, 501, 618
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AloI GAACNNNNNNTCC 2 cut(s) 383, 415
AluBI AGCT 4 cut(s) 443, 447, 548, 685
AluI AGCT 4 cut(s) 443, 447, 548, 685
Alw21I GWGCWC 1 cut(s) 595
Alw44I GTGCAC 1 cut(s) 591
AlwI GGATC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 4 cut(s) 70, 616, 676, 811
ApaLI GTGCAC 1 cut(s) 591
ApeKI GCWGC 3 cut(s) 59, 415, 548
ApoI RAATTY 1 cut(s) 710
AspLEI GCGC 2 cut(s) 702, 704
AspS9I GGNCC 2 cut(s) 739, 898
AsuHPI GGTGA 3 cut(s) 251, 260, 471
AsuNHI GCTAGC 2 cut(s) 443, 932
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 2 cut(s) 739, 898
AxyI CCTNAGG 1 cut(s) 972
BaeGI GKGCMC 1 cut(s) 595
BalI TGGCCA 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 784
Bbv12I GWGCWC 1 cut(s) 595
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 71, 427, 535
BccI CCATC 4 cut(s) 357, 604, 608, 641
BceAI ACGGC 1 cut(s) 798
BciT130I CCWGG 3 cut(s) 265, 503, 620
BclI TGATCA 1 cut(s) 22
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 6 cut(s) 216, 444, 774, 830, 894, 933
BfmI CTRYAG 2 cut(s) 549, 750
BisI GCNGC 3 cut(s) 60, 416, 549
BlsI GCNGC 3 cut(s) 61, 417, 550
BmcAI AGTACT 2 cut(s) 220, 368
Bme1390I CCNGG 3 cut(s) 265, 503, 620
Bme18I GGWCC 2 cut(s) 739, 898
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 2 cut(s) 739, 898
BmiI GGNNCC 2 cut(s) 899, 923
BmrFI CCNGG 3 cut(s) 265, 503, 620
BmrI ACTGGG 2 cut(s) 378, 920
BmsI GCATC 3 cut(s) 26, 48, 945
BmtI GCTAGC 2 cut(s) 447, 936
BmuI ACTGGG 2 cut(s) 378, 920
BpiI GAAGAC 1 cut(s) 784
Bpu10I CCTNAGC 1 cut(s) 282
BsaJI CCNNGG 5 cut(s) 263, 264, 502, 534, 619
Bse118I RCCGGY 1 cut(s) 741
Bse1I ACTGG 3 cut(s) 215, 384, 926
Bse21I CCTNAGG 1 cut(s) 972
Bse3DI GCAATG 1 cut(s) 867
BseBI CCWGG 3 cut(s) 265, 503, 620
BseDI CCNNGG 5 cut(s) 263, 264, 502, 534, 619
BseGI GGATG 4 cut(s) 349, 559, 661, 675
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 6 cut(s) 23, 38, 258, 296, 536, 558
BseNI ACTGG 3 cut(s) 215, 384, 926
BsePI GCGCGC 1 cut(s) 700
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 3 cut(s) 71, 427, 535
Bsh1236I CGCG 2 cut(s) 565, 702
BshFI GGCC 4 cut(s) 72, 618, 678, 813
BsiHKAI GWGCWC 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 1 cut(s) 742
BsnI GGCC 4 cut(s) 72, 618, 678, 813
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 2 cut(s) 22, 250
BspACI CCGC 2 cut(s) 499, 563
BspANI GGCC 4 cut(s) 72, 618, 678, 813
BspCNI CTCAG 6 cut(s) 22, 39, 257, 295, 535, 557
BspFNI CGCG 2 cut(s) 565, 702
BspLI GGNNCC 2 cut(s) 899, 923
BspMAI CTGCAG 1 cut(s) 553
BspOI GCTAGC 2 cut(s) 447, 936
BspPI GGATC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 741
BsrI ACTGG 3 cut(s) 215, 384, 926
BssAI RCCGGY 1 cut(s) 741
BssECI CCNNGG 5 cut(s) 263, 264, 502, 534, 619
BssHII GCGCGC 1 cut(s) 700
BssMI GATC 2 cut(s) 22, 250
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 3 cut(s) 265, 503, 620
Bst4CI ACNGT 2 cut(s) 35, 649
Bst6I CTCTTC 1 cut(s) 606
BstC8I GCNNGC 4 cut(s) 441, 445, 702, 934
BstDEI CTNAG 8 cut(s) 9, 47, 244, 282, 522, 544, 956, 972
BstF5I GGATG 4 cut(s) 349, 559, 661, 675
BstFNI CGCG 2 cut(s) 565, 702
BstHHI GCGC 2 cut(s) 702, 704
BstKTI GATC 2 cut(s) 25, 253
BstMBI GATC 2 cut(s) 22, 250
BstMWI GCNNNNNNNGC 3 cut(s) 162, 545, 830
BstNI CCWGG 3 cut(s) 265, 503, 620
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 3 cut(s) 263, 501, 618
BstSFI CTRYAG 2 cut(s) 549, 750
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 2 cut(s) 565, 702
BstV1I GCAGC 3 cut(s) 71, 427, 535
BstV2I GAAGAC 1 cut(s) 784
BstXI CCANNNNNNTGG 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 972
BsuRI GGCC 4 cut(s) 72, 618, 678, 813
BtsCI GGATG 4 cut(s) 349, 559, 661, 675
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 933
Cac8I GCNNGC 4 cut(s) 441, 445, 702, 934
CfoI GCGC 2 cut(s) 702, 704
Cfr10I RCCGGY 1 cut(s) 741
Cfr13I GGNCC 2 cut(s) 739, 898
CpoI CGGWCCG 1 cut(s) 739
Csp6I GTAC 3 cut(s) 219, 367, 627
CspCI CAANNNNNGTGG 2 cut(s) 98, 133
CspI CGGWCCG 1 cut(s) 739
CviAII CATG 6 cut(s) 55, 140, 412, 940, 961, 978
CviQI GTAC 3 cut(s) 219, 367, 627
DdeI CTNAG 8 cut(s) 9, 47, 244, 282, 522, 544, 956, 972
DpnI GATC 2 cut(s) 24, 252
DpnII GATC 2 cut(s) 22, 250
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 534
Eco32I GATATC 1 cut(s) 569
Eco47I GGWCC 2 cut(s) 739, 898
Eco81I CCTNAGG 1 cut(s) 972
Eco88I CYCGRG 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 898
EcoRII CCWGG 3 cut(s) 263, 501, 618
EcoRV GATATC 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 6 cut(s) 58, 143, 415, 943, 964, 981
FatI CATG 6 cut(s) 54, 139, 411, 939, 960, 977
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 60, 416, 549
FokI GGATG 4 cut(s) 336, 546, 668, 682
Fsp4HI GCNGC 3 cut(s) 60, 416, 549
FspBI CTAG 6 cut(s) 216, 444, 774, 830, 894, 933
GlaI GCGC 2 cut(s) 701, 703
GluI GCNGC 3 cut(s) 60, 416, 549
HaeIII GGCC 4 cut(s) 72, 618, 678, 813
HapII CCGG 1 cut(s) 742
HhaI GCGC 2 cut(s) 702, 704
Hin1II CATG 6 cut(s) 58, 143, 415, 943, 964, 981
Hin6I GCGC 2 cut(s) 700, 702
HinP1I GCGC 2 cut(s) 700, 702
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 8 cut(s) 520, 530, 554, 734, 780, 839, 879, 967
HpaII CCGG 1 cut(s) 742
HphI GGTGA 3 cut(s) 251, 260, 471
Hpy166II GTNNAC 2 cut(s) 474, 593
Hpy188I TCNGA 6 cut(s) 22, 48, 354, 454, 525, 739
Hpy188III TCNNGA 4 cut(s) 127, 434, 605, 653
Hpy8I GTNNAC 2 cut(s) 474, 593
HpyAV CCTTC 5 cut(s) 115, 408, 412, 803, 899
HpyCH4III ACNGT 2 cut(s) 35, 649
HpyCH4V TGCA 8 cut(s) 17, 120, 415, 487, 551, 593, 824, 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 545, 830
HpyF3I CTNAG 8 cut(s) 9, 47, 244, 282, 522, 544, 956, 972
Hsp92II CATG 6 cut(s) 58, 143, 415, 943, 964, 981
HspAI GCGC 2 cut(s) 700, 702
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 250
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 3 cut(s) 71, 427, 535
LweI GCATC 3 cut(s) 26, 48, 945
MaeI CTAG 6 cut(s) 216, 444, 774, 830, 894, 933
MaeIII GTNAC 3 cut(s) 508, 643, 754
MalI GATC 2 cut(s) 24, 252
MboI GATC 2 cut(s) 22, 250
MboII GAAGA 3 cut(s) 593, 789, 921
MhlI GDGCHC 1 cut(s) 595
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 4 cut(s) 77, 274, 513, 710
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 5 cut(s) 514, 539, 774, 873, 976
MmeI TCCRAC 5 cut(s) 223, 355, 368, 377, 926
MnlI CCTC 6 cut(s) 240, 267, 291, 474, 487, 800
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 2 cut(s) 273, 516
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 1 cut(s) 742
MspR9I CCNGG 3 cut(s) 265, 503, 620
MvaI CCWGG 3 cut(s) 265, 503, 620
MvnI CGCG 2 cut(s) 565, 702
MwoI GCNNNNNNNGC 3 cut(s) 162, 545, 830
NdeII GATC 2 cut(s) 22, 250
NheI GCTAGC 2 cut(s) 443, 932
NlaIII CATG 6 cut(s) 58, 143, 415, 943, 964, 981
NlaIV GGNNCC 2 cut(s) 899, 923
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 643
NspI RCATGY 1 cut(s) 964
PasI CCCWGGG 1 cut(s) 264
PauI GCGCGC 1 cut(s) 700
PfeI GAWTC 3 cut(s) 554, 734, 839
PflFI GACNNNGTC 1 cut(s) 529
PkrI GCNGC 3 cut(s) 61, 417, 550
PleI GAGTC 5 cut(s) 514, 538, 774, 873, 975
PpsI GAGTC 5 cut(s) 514, 538, 774, 873, 975
PpuMI RGGWCCY 1 cut(s) 898
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 3 cut(s) 263, 501, 618
PspGI CCWGG 3 cut(s) 263, 501, 618
PspN4I GGNNCC 2 cut(s) 899, 923
PspPI GGNCC 2 cut(s) 739, 898
PspPPI RGGWCCY 1 cut(s) 898
PstI CTGCAG 1 cut(s) 553
PsyI GACNNNGTC 1 cut(s) 529
PteI GCGCGC 1 cut(s) 700
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 3 cut(s) 220, 368, 628
RsaNI GTAC 3 cut(s) 219, 367, 627
Rsr2I CGGWCCG 1 cut(s) 739
RsrII CGGWCCG 1 cut(s) 739
SaqAI TTAA 2 cut(s) 273, 516
SatI GCNGC 3 cut(s) 60, 416, 549
Sau3AI GATC 2 cut(s) 22, 250
Sau96I GGNCC 2 cut(s) 739, 898
ScaI AGTACT 2 cut(s) 220, 368
SchI GAGTC 5 cut(s) 514, 539, 774, 873, 976
ScrFI CCNGG 3 cut(s) 265, 503, 620
SduI GDGCHC 1 cut(s) 595
SetI ASST 9 cut(s) 250, 445, 449, 466, 479, 550, 642, 687, 693
SfaNI GCATC 3 cut(s) 26, 48, 945
SfcI CTRYAG 2 cut(s) 549, 750
SinI GGWCC 2 cut(s) 739, 898
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 4 cut(s) 77, 274, 513, 710
SsiI CCGC 2 cut(s) 499, 563
SspMI CTAG 6 cut(s) 216, 444, 774, 830, 894, 933
StyD4I CCNGG 3 cut(s) 263, 501, 618
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 2 cut(s) 35, 649
TaqI TCGA 2 cut(s) 636, 837
TaqII GACCGA 1 cut(s) 542
TasI AATT 4 cut(s) 77, 274, 513, 710
TatI WGTACW 2 cut(s) 218, 366
TfiI GAWTC 3 cut(s) 554, 734, 839
Tru1I TTAA 2 cut(s) 273, 516
Tru9I TTAA 2 cut(s) 273, 516
TscAI CASTG 2 cut(s) 91, 933
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 3 cut(s) 59, 415, 548
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 2 cut(s) 400, 474
TspRI CASTG 2 cut(s) 91, 933
Tth111I GACNNNGTC 1 cut(s) 529
VneI GTGCAC 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 739, 898
XapI RAATTY 1 cut(s) 710
XceI RCATGY 1 cut(s) 964
XspI CTAG 6 cut(s) 216, 444, 774, 830, 894, 933
ZrmI AGTACT 2 cut(s) 220, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.