Rh5CG148900

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000360
Physical Location & Seq
Forward (+)
13614073 .. 13615200
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG148900.1

Sequence Viewer

Length: 1128 bp
ATGAGTGGCCTAAAGCTTGACCTTGTGAAGCGCGCTGTCAAATTTATCATACAAAACTTGGGGCCTTCAGACCGCCTTTCAATAGTTATATTCTCAACAACTGCTAGAAGAGTCTTTCCTCTCAGAAGAATGTATGTTGAAGGCCGTGAAAGTGCTGTGCGAGCTGTCAATTCTCTTAGACCAGATAACATGACCAACATTGTGGCAGGACGCGAGATAGGAATTCGGGTCCTTGAAGAACGAAGGGAAAGGAACCCAGTTGCTAGCATCATGCTTTTATCCGATGGTGTGGATTCTTACTGTCATAGTCCAAGCCAACTGTTGGGCCAATTGCCTGCTTCGATTCACTCTAATTGTATGCAACATGAAATTCCAGTCCACACATTTGGGTTTGGCAGCGACCATGATCCAAATACTATGCATGCTATATCTAATGCGTCAGGTGGCACCTTTTCATTCATTGAATCAGTTGGCATGATACAAAATTCCTTTGCTCTGTGCATTGGTGGTCTTCTCAGTGTTCTGGCTCAGGAAGTTCGCCTCACAGTAAGGTCAGCATCACGTGGTGTGAAGATTGTAGCAATACCATCAGGGAGATATGTCAGAAATATATCTGATGAGGGCTTGCAAGGTGTGGTTGATGTTGGGAGTCTCTACGCAGAAGAGGAGAAACAATTTCTGGTCTACCTCTTAGTTCCACAATCCTCAGCTTCAAATACAAGGACATCATTGTTAGATGTGTCATGCGTGTACAGAGATCTAGCTGCAAATGAGTTAATCCAGATGCAAGGTGAGCTAGTTGAGATACCGAGACCTGTGGTTTGTTCCCCTGCCGATCAGGTAGTCTCTTTAGAGGTTGATCGCCAGCGCAACAGAATTTTGGTCTCTGAAACTATAGCAAAGGCACAAGGGTTGGCTGAGATTGGAAATCTAGAGGCTGCACGGGCCATTTTGACTCAACGAAGAGAAACTCTCTTAACAACACCAGCAGCCCGAGCAGGGGATGGTCTCAGCAATTTGCTCGAAACTGAGCTTCAAGAAATCATGGATAGAATGACAACTATGGATTTGTATACTCACACTGGGCGTGCTTATGCCCTCTTGGGAATGAGCTCTCATTCACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

375

Amino Acids

41.05

Weight (kDa)

6.27

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_3 PF13768 1 - 153 7.8e-12 von Willebrand factor type A domain
VWA PF00092 2 - 155 1.3e-13 von Willebrand factor type A domain
VWA_2 PF13519 5 - 96 2.2e-09 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 2 cut(s) 684, 1073
AccII CGCG 2 cut(s) 33, 213
AciI CCGC 1 cut(s) 73
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 5 cut(s) 41, 222, 369, 484, 876
AcuI CTGAAG 1 cut(s) 51
AcvI CACGTG 1 cut(s) 563
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 1 cut(s) 752
AfiI CCNNNNNNNGG 3 cut(s) 322, 999, 1000
AgsI TTSAA 6 cut(s) 81, 140, 236, 464, 714, 1037
AluBI AGCT 7 cut(s) 16, 164, 710, 764, 796, 1033, 1113
AluI AGCT 7 cut(s) 16, 164, 710, 764, 796, 1033, 1113
Alw21I GWGCWC 1 cut(s) 1115
Alw26I GTCTC 5 cut(s) 656, 805, 850, 889, 1013
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 993
AoxI GGCC 5 cut(s) 7, 62, 142, 325, 945
ApeKI GCWGC 4 cut(s) 396, 764, 938, 989
ApoI RAATTY 5 cut(s) 41, 222, 369, 484, 876
ArsI GACNNNNNNTTYG 2 cut(s) 804, 836
AspLEI GCGC 3 cut(s) 33, 35, 870
AspS9I GGNCC 4 cut(s) 62, 229, 325, 945
AsuHPI GGTGA 1 cut(s) 803
AsuNHI GCTAGC 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 993
AvaII GGWCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 1115
BbrPI CACGTG 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 1115
BbvCI CCTCAGC 1 cut(s) 706
BbvI GCAGC 4 cut(s) 408, 751, 925, 1001
BccI CCATC 3 cut(s) 278, 595, 998
BceAI ACGGC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 1003, 1037
BcoDI GTCTC 5 cut(s) 656, 805, 850, 889, 1013
BfaI CTAG 5 cut(s) 105, 264, 761, 797, 932
BfmI CTRYAG 2 cut(s) 894, 1124
BglII AGATCT 1 cut(s) 757
BisI GCNGC 4 cut(s) 397, 765, 939, 990
BlsI GCNGC 4 cut(s) 398, 766, 940, 991
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 993
BmgT120I GGNCC 4 cut(s) 62, 229, 325, 945
BmiI GGNNCC 4 cut(s) 63, 230, 254, 448
BmrI ACTGGG 2 cut(s) 251, 1092
BmsI GCATC 3 cut(s) 276, 566, 774
BmtI GCTAGC 1 cut(s) 267
BmuI ACTGGG 2 cut(s) 251, 1092
BpiI GAAGAC 1 cut(s) 503
BplI GAGNNNNNCTC 2 cut(s) 957, 989
Bpu10I CCTNAGC 2 cut(s) 528, 706
BsaAI YACGTR 1 cut(s) 563
BsaI GGTCTC 3 cut(s) 805, 889, 1013
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 999, 1000
Bse1I ACTGG 3 cut(s) 257, 374, 1087
BseGI GGATG 1 cut(s) 1009
BseLI CCNNNNNNNGG 3 cut(s) 322, 999, 1000
BseMII CTCAG 7 cut(s) 136, 529, 542, 720, 909, 1020, 1024
BseNI ACTGG 3 cut(s) 257, 374, 1087
BsePI GCGCGC 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 680
BseXI GCAGC 4 cut(s) 408, 751, 925, 1001
BsgI GTGCAG 1 cut(s) 924
Bsh1236I CGCG 2 cut(s) 33, 213
BshFI GGCC 5 cut(s) 9, 64, 144, 327, 947
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 1115
BsiHKCI CYCGRG 1 cut(s) 993
BslI CCNNNNNNNGG 3 cut(s) 322, 999, 1000
BsmAI GTCTC 5 cut(s) 656, 805, 850, 889, 1013
BsnI GGCC 5 cut(s) 9, 64, 144, 327, 947
Bso31I GGTCTC 3 cut(s) 805, 889, 1013
BsoBI CYCGRG 1 cut(s) 993
Bsp1286I GDGCHC 1 cut(s) 1115
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 4 cut(s) 406, 757, 835, 859
BspACI CCGC 1 cut(s) 73
BspANI GGCC 5 cut(s) 9, 64, 144, 327, 947
BspCNI CTCAG 7 cut(s) 135, 528, 541, 719, 910, 1021, 1023
BspFNI CGCG 2 cut(s) 33, 213
BspLI GGNNCC 4 cut(s) 63, 230, 254, 448
BspOI GCTAGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 3 cut(s) 805, 889, 1013
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 3 cut(s) 257, 374, 1087
BssHII GCGCGC 1 cut(s) 31
BssMI GATC 4 cut(s) 406, 757, 835, 859
BssNAI GTATAC 1 cut(s) 1074
Bst1107I GTATAC 1 cut(s) 1074
Bst4CI ACNGT 4 cut(s) 302, 321, 547, 1125
Bst6I CTCTTC 3 cut(s) 103, 657, 958
BstAUI TGTACA 1 cut(s) 750
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 8 cut(s) 33, 162, 265, 336, 423, 626, 866, 1089
BstDEI CTNAG 9 cut(s) 122, 176, 515, 528, 691, 706, 918, 1010, 1029
BstF5I GGATG 1 cut(s) 1009
BstFNI CGCG 2 cut(s) 33, 213
BstHHI GCGC 3 cut(s) 33, 35, 870
BstKTI GATC 4 cut(s) 409, 760, 838, 862
BstMAI GTCTC 5 cut(s) 656, 805, 850, 889, 1013
BstMBI GATC 4 cut(s) 406, 757, 835, 859
BstMWI GCNNNNNNNGC 4 cut(s) 161, 793, 944, 995
BstNSI RCATGY 1 cut(s) 425
BstSFI CTRYAG 2 cut(s) 894, 1124
BstUI CGCG 2 cut(s) 33, 213
BstV1I GCAGC 4 cut(s) 408, 751, 925, 1001
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 757
BstXI CCANNNNNNTGG 2 cut(s) 202, 386
BstYI RGATCY 1 cut(s) 757
BstZ17I GTATAC 1 cut(s) 1074
BsuRI GGCC 5 cut(s) 9, 64, 144, 327, 947
BtsCI GGATG 1 cut(s) 1009
BtsIMutI CAGTG 3 cut(s) 523, 1080, 1121
Cac8I GCNNGC 8 cut(s) 33, 162, 265, 336, 423, 626, 866, 1089
CfoI GCGC 3 cut(s) 33, 35, 870
Cfr13I GGNCC 4 cut(s) 62, 229, 325, 945
CseI GACGC 2 cut(s) 219, 426
Csp6I GTAC 1 cut(s) 751
CviAII CATG 8 cut(s) 190, 271, 365, 404, 422, 475, 744, 1045
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 9 cut(s) 122, 176, 515, 528, 691, 706, 918, 1010, 1029
DpnI GATC 4 cut(s) 408, 759, 837, 861
DpnII GATC 4 cut(s) 406, 757, 835, 859
DraIII CACNNNGTG 1 cut(s) 566
Eam1104I CTCTTC 3 cut(s) 103, 657, 958
EarI CTCTTC 3 cut(s) 103, 657, 958
Ecl136II GAGCTC 1 cut(s) 1113
Eco24I GRGCYC 1 cut(s) 1115
Eco31I GGTCTC 3 cut(s) 805, 889, 1013
Eco47I GGWCC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 1113
Eco57I CTGAAG 1 cut(s) 51
Eco72I CACGTG 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 993
EcoICRI GAGCTC 1 cut(s) 1113
EcoO109I RGGNCCY 2 cut(s) 62, 229
EcoRI GAATTC 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 1115
FaeI CATG 8 cut(s) 193, 274, 368, 407, 425, 478, 747, 1048
FatI CATG 8 cut(s) 189, 270, 364, 403, 421, 474, 743, 1044
FblI GTMKAC 2 cut(s) 684, 1073
Fnu4HI GCNGC 4 cut(s) 397, 765, 939, 990
FokI GGATG 1 cut(s) 1016
FriOI GRGCYC 1 cut(s) 1115
Fsp4HI GCNGC 4 cut(s) 397, 765, 939, 990
FspBI CTAG 5 cut(s) 105, 264, 761, 797, 932
GlaI GCGC 3 cut(s) 32, 34, 869
GluI GCNGC 4 cut(s) 397, 765, 939, 990
HaeIII GGCC 5 cut(s) 9, 64, 144, 327, 947
HgaI GACGC 2 cut(s) 219, 426
HhaI GCGC 3 cut(s) 33, 35, 870
Hin1II CATG 8 cut(s) 193, 274, 368, 407, 425, 478, 747, 1048
Hin6I GCGC 3 cut(s) 31, 33, 868
HinP1I GCGC 3 cut(s) 31, 33, 868
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 6 cut(s) 111, 293, 343, 464, 649, 955
HphI GGTGA 1 cut(s) 803
Hpy166II GTNNAC 4 cut(s) 379, 685, 751, 1074
Hpy188I TCNGA 6 cut(s) 70, 125, 283, 605, 616, 889
Hpy188III TCNNGA 4 cut(s) 530, 781, 932, 1037
Hpy8I GTNNAC 4 cut(s) 379, 685, 751, 1074
HpyAV CCTTC 3 cut(s) 75, 134, 237
HpyCH4III ACNGT 4 cut(s) 302, 321, 547, 1125
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 7 cut(s) 361, 421, 501, 628, 767, 787, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 793, 944, 995
HpyF3I CTNAG 9 cut(s) 122, 176, 515, 528, 691, 706, 918, 1010, 1029
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 8 cut(s) 193, 274, 368, 407, 425, 478, 747, 1048
HspAI GCGC 3 cut(s) 31, 33, 868
Kzo9I GATC 4 cut(s) 406, 757, 835, 859
Lsp1109I GCAGC 4 cut(s) 408, 751, 925, 1001
LweI GCATC 3 cut(s) 276, 566, 774
MaeI CTAG 5 cut(s) 105, 264, 761, 797, 932
MaeII ACGT 1 cut(s) 562
MalI GATC 4 cut(s) 408, 759, 837, 861
MboI GATC 4 cut(s) 406, 757, 835, 859
MboII GAAGA 7 cut(s) 120, 138, 248, 503, 583, 674, 975
MfeI CAATTG 1 cut(s) 329
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 1 cut(s) 1115
MlyI GAGTC 3 cut(s) 120, 658, 949
MnlI CCTC 9 cut(s) 129, 551, 613, 658, 698, 715, 847, 928, 1109
Mph1103I ATGCAT 1 cut(s) 423
MseI TTAA 2 cut(s) 776, 977
MunI CAATTG 1 cut(s) 329
MvnI CGCG 2 cut(s) 33, 213
MwoI GCNNNNNNNGC 4 cut(s) 161, 793, 944, 995
NdeII GATC 4 cut(s) 406, 757, 835, 859
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 8 cut(s) 193, 274, 368, 407, 425, 478, 747, 1048
NlaIV GGNNCC 4 cut(s) 63, 230, 254, 448
NsiI ATGCAT 1 cut(s) 423
NspI RCATGY 1 cut(s) 425
PaeI GCATGC 1 cut(s) 425
PauI GCGCGC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 293, 343, 464
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 4 cut(s) 398, 766, 940, 991
PleI GAGTC 3 cut(s) 119, 657, 949
PmaCI CACGTG 1 cut(s) 563
PmlI CACGTG 1 cut(s) 563
PpsI GAGTC 3 cut(s) 119, 657, 949
Ppu21I YACGTR 1 cut(s) 563
PpuMI RGGWCCY 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 1115
Psp5II RGGWCCY 1 cut(s) 229
PspCI CACGTG 1 cut(s) 563
PspN4I GGNNCC 4 cut(s) 63, 230, 254, 448
PspPI GGNCC 4 cut(s) 62, 229, 325, 945
PspPPI RGGWCCY 1 cut(s) 229
PsuI RGATCY 1 cut(s) 757
PteI GCGCGC 1 cut(s) 31
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
SacI GAGCTC 1 cut(s) 1115
SaqAI TTAA 2 cut(s) 776, 977
SatI GCNGC 4 cut(s) 397, 765, 939, 990
Sau3AI GATC 4 cut(s) 406, 757, 835, 859
Sau96I GGNCC 4 cut(s) 62, 229, 325, 945
SchI GAGTC 3 cut(s) 120, 658, 949
SduI GDGCHC 1 cut(s) 1115
SfaNI GCATC 3 cut(s) 276, 566, 774
SfcI CTRYAG 2 cut(s) 894, 1124
SinI GGWCC 1 cut(s) 229
SphI GCATGC 1 cut(s) 425
SsiI CCGC 1 cut(s) 73
SspMI CTAG 5 cut(s) 105, 264, 761, 797, 932
SstI GAGCTC 1 cut(s) 1115
TaaI ACNGT 4 cut(s) 302, 321, 547, 1125
TaiI ACGT 1 cut(s) 565
TaqI TCGA 2 cut(s) 341, 1023
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 3 cut(s) 293, 343, 464
Tru1I TTAA 2 cut(s) 776, 977
Tru9I TTAA 2 cut(s) 776, 977
TscAI CASTG 3 cut(s) 523, 1087, 1128
TseI GCWGC 4 cut(s) 396, 764, 938, 989
TspDTI ATGAA 3 cut(s) 381, 444, 448
TspRI CASTG 3 cut(s) 523, 1087, 1128
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 5 cut(s) 41, 222, 369, 484, 876
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 1 cut(s) 425
XmiI GTMKAC 2 cut(s) 684, 1073
XspI CTAG 5 cut(s) 105, 264, 761, 797, 932
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.