Rh5CG148800

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000360
Physical Location & Seq
Forward (+)
13606009 .. 13613922
7914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG148800.1

Sequence Viewer

Length: 516 bp
ATGTCTTCTCGGACTGCATCTGATCAAAACAATTGTGGCATTTGTCTGAGTAGCATGGCAACCCCGAAAGGCCAAGCCATCTTCACTGCCCAATGCTCACACTCCTTCCACTACCCTTGCATTGTCCAGAATGTTCAGCATGGAAATCTTAGTTGCCCCATTTGCCGAGCAATATGGGATAAGCATAATGTTCCTTTCCAACCAAACAACTGGACTAGTACTTCCCCCTCTCAACATAACAACTCAGGTGATCCCCCTCACCTATGGGGTGTTTTCCCTCGGCAAAACAACTTGGGTGGGAACTCTCCTAACATCTCATTCTCATTCCAGCCGCAACAGCCACCCCATCAAACTTATCATCAGTACTCGTATCAGCAACCTAGTTGGAATTATCCTTCCTTCCCATTCGTGCAGCAAACCCAGGCCCCACCCCAGCCACCTAGCTTCTCTGATGATGAACCTCTTTTGTCCACCTCACCCATGCAATCCAATGACCCCCTAGGGTATAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

171

Amino Acids

19.12

Weight (kDa)

6.41

Isoelectric Point (pI)

64.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 10 - 56 2.5e-08 Ring finger domain
zf-RING_11 PF17123 11 - 41 2.4e-10 RING-like zinc finger
zf-C3HC4 PF00097 12 - 55 5.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 12 - 55 8.8e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 12 - 53 3.1e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 245
AfaI GTAC 2 cut(s) 220, 365
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 1 cut(s) 444
AluI AGCT 1 cut(s) 444
AlwI GGATC 1 cut(s) 245
AoxI GGCC 2 cut(s) 70, 423
ApeKI GCWGC 1 cut(s) 412
AspA2I CCTAGG 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 424
AsuHPI GGTGA 3 cut(s) 251, 260, 468
AvrII CCTAGG 1 cut(s) 499
BbvI GCAGC 1 cut(s) 424
BccI CCATC 2 cut(s) 86, 354
BciT130I CCWGG 1 cut(s) 422
BclI TGATCA 1 cut(s) 22
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 4 cut(s) 216, 381, 441, 500
BisI GCNGC 2 cut(s) 332, 413
BlnI CCTAGG 1 cut(s) 499
BlsI GCNGC 2 cut(s) 333, 414
BmcAI AGTACT 2 cut(s) 220, 365
Bme1390I CCNGG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 278, 420, 499
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 3 cut(s) 278, 420, 499
BseMII CTCAG 2 cut(s) 38, 258
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 432
BsgI GTGCAG 1 cut(s) 431
BshFI GGCC 2 cut(s) 72, 425
BsnI GGCC 2 cut(s) 72, 425
Bsp143I GATC 2 cut(s) 22, 250
BspACI CCGC 1 cut(s) 332
BspANI GGCC 2 cut(s) 72, 425
BspCNI CTCAG 2 cut(s) 39, 257
BspLI GGNNCC 1 cut(s) 426
BspPI GGATC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 278, 420, 499
BssMI GATC 2 cut(s) 22, 250
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 422
BstDEI CTNAG 3 cut(s) 47, 149, 244
BstKTI GATC 2 cut(s) 25, 253
BstMBI GATC 2 cut(s) 22, 250
BstMWI GCNNNNNNNGC 2 cut(s) 162, 337
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 210
BsuRI GGCC 2 cut(s) 72, 425
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 219, 364
CspCI CAANNNNNGTGG 4 cut(s) 98, 133, 277, 312
CviAII CATG 3 cut(s) 55, 140, 481
CviJI RGCY 7 cut(s) 72, 77, 331, 340, 425, 436, 444
CviKI_1 RGCY 7 cut(s) 72, 77, 331, 340, 425, 436, 444
CviQI GTAC 2 cut(s) 219, 364
DdeI CTNAG 3 cut(s) 47, 149, 244
DpnI GATC 2 cut(s) 24, 252
DpnII GATC 2 cut(s) 22, 250
Eco130I CCWWGG 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 3 cut(s) 58, 143, 484
FaiI YATR 8 cut(s) 56, 141, 175, 186, 237, 265, 482, 507
FatI CATG 3 cut(s) 54, 139, 480
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 332, 413
Fsp4HI GCNGC 2 cut(s) 332, 413
FspBI CTAG 4 cut(s) 216, 381, 441, 500
GluI GCNGC 2 cut(s) 332, 413
GsaI CCCAGC 1 cut(s) 436
HaeIII GGCC 2 cut(s) 72, 425
Hin1II CATG 3 cut(s) 58, 143, 484
HphI GGTGA 3 cut(s) 251, 260, 468
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 4 cut(s) 12, 22, 48, 451
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 3 cut(s) 115, 405, 409
HpyCH4V TGCA 4 cut(s) 17, 120, 412, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 337
HpyF3I CTNAG 3 cut(s) 47, 149, 244
Hsp92II CATG 3 cut(s) 58, 143, 484
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 250
LpnPI CCDG 7 cut(s) 140, 196, 231, 341, 407, 434, 446
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 26
MaeI CTAG 4 cut(s) 216, 381, 441, 500
MalI GATC 2 cut(s) 24, 252
MboI GATC 2 cut(s) 22, 250
MboII GAAGA 1 cut(s) 73
MfeI CAATTG 1 cut(s) 31
MluCI AATT 3 cut(s) 31, 388, 511
MmeI TCCRAC 2 cut(s) 223, 365
MnlI CCTC 5 cut(s) 238, 267, 288, 471, 484
MseI TTAA 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 162, 337
NdeII GATC 2 cut(s) 22, 250
NlaIII CATG 3 cut(s) 58, 143, 484
NlaIV GGNNCC 1 cut(s) 426
NmeAIII GCCGAG 2 cut(s) 191, 259
PkrI GCNGC 2 cut(s) 333, 414
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 424
RsaI GTAC 2 cut(s) 220, 365
RsaNI GTAC 2 cut(s) 219, 364
SaqAI TTAA 1 cut(s) 514
SatI GCNGC 2 cut(s) 332, 413
Sau3AI GATC 2 cut(s) 22, 250
Sau96I GGNCC 1 cut(s) 424
ScaI AGTACT 2 cut(s) 220, 365
ScrFI CCNGG 1 cut(s) 422
SetI ASST 7 cut(s) 250, 264, 382, 442, 446, 463, 476
SfaNI GCATC 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 3 cut(s) 31, 388, 511
SsiI CCGC 1 cut(s) 332
SspMI CTAG 4 cut(s) 216, 381, 441, 500
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 499
TasI AATT 3 cut(s) 31, 388, 511
TatI WGTACW 2 cut(s) 218, 363
TauI GCSGC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 514
Tru9I TTAA 1 cut(s) 514
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 471
TspRI CASTG 1 cut(s) 91
XmaJI CCTAGG 1 cut(s) 499
XspI CTAG 4 cut(s) 216, 381, 441, 500
ZrmI AGTACT 2 cut(s) 220, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.