Rh5AG139400

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000360
Physical Location & Seq
Forward (+)
14492351 .. 14493952
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG139400.1

Sequence Viewer

Length: 1602 bp
ATGCCAGAACCCGAGTACCCTCCTGAGCCACCTACCTTCTCTGACGATGAACCTCTCCCATCGTGCACCTCATCCATTCAATCCTCTGCCCCGCAGAATATAACAGTCAAGACTCATACGGAGTCATCTGCTATCTCTTCTGCAGAATCAATCCCAAATTTTCCTGTCCTTGTCAGCATTCTTGCACCACCCCTTCAGGATTCTGAGGGCCATGGTCGTACGCCCATTGACCTTGTGACAGTTCTGGATGTCAGTGGCAGCATGGAAGGCACAAAGCTTTCCCTACTCAAGCAAGCTGTCACATTTGTCATACAAAACTTGGGGCCTTTGGATAGACTGTCTGTAGTTTCGTTCTCATCAAGTTGTAGAAGAGTCTTTCCTCTCCAGAGAATGTCTGTTGATGGCCATGAAAGTGCCATCCTAGCCATTGAGTCTCTTAGGGCAGGTGGTGCAACTAACATTGCTGAAGGACTCAAGAAAGGAATTAAGGTCCTTGAAGATCGAAGGGAAAGAAACCCAGTTTCCAGTATCATCCTCTTATCTGATGGCATAGATACATACAATCGAACTGCAAACCGACTGTTGAACCAGTTGCCTGATTCGATTCGTTCTAGCAACATGCAACATGAAATCCCAGTCCACACATTTGGATTTGGCTACGACCATGATCCCAACATTATGCATGCTATATCTGATCTGTCAGGTGGCACCTTTTCGTTCATTGAATCAGTTGGAATGATACAAGACTCCTTTGCTCTGTGTATTGGTGGTCTTCTCAGTGTTGTGGCTCAGGAAGTTCGCCTAACAGTAAGGTCAGCATCGCCTCGGGTGAAGATTTTAGCAATACCATCAGGGAGACACGTGAATGAGATTTCTGATGAGGGTCAACAAGGTGTTGTTCACGTTGGAAATATGTACGCAGAAGAGGAGAAACAATTTCTGGTCTACCTCTTAGTTCCAGAATCCTCAGGTACGTATACTAAGATGTCATTGTTAGACGTGTTATGCATGTACAAAGATCTAGCTTCCAATGAACTCATCCGGGTGCAAGGTGAGAAAATGGAGATACTGAGACCCGAGGTTTGTTCCCCTGCTGAAAAGGCAGTGTCTTTGGAGGTTGATCGGCAGCGGAACAGAATTTTGGTGGCTGAAGCTATTGCTGAGGCACAAAGGTTGGCTGAGATGGGAAATATTGAGGGTGCACAGGCTCTACTGGCTCAACGGAAAGAAATTCTCTTAACATCTCCAGCATCCCAAGCTGGGGATTATCACAGTAATTTGTTTGAAACTGAGCTTAGAGAAATCATGGATAGAATGGCATCTATGAAGTTGTATAAACAAACCGGGCGTGCTTACGCTCTTGCAGGAATCAGTTCCCATAAATCACAAAGGGCCAGTGCTAGGGGTGACACAAGAGCCTCCTGTCTCAATTCGGGTTCAGTTGTCTCCAGGAAGAGGGGTCTCCGTAGTCGCAACAGTACCTACAGTTTTGCTCCAGGTGAGTTGGGTCAACCACCTGCCGCAGTTGGTGCTTTCGAAACACCTGCTATGGTCAGAATGGTAAGAAAATCACAGAATAGAAATCAACCTGGGCCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

533

Amino Acids

58.02

Weight (kDa)

6.06

Isoelectric Point (pI)

63.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_CoxE PF05762 73 - 198 1.2e-08 VWA domain containing CoxE-like protein
VWA PF00092 77 - 242 5e-21 von Willebrand factor type A domain
VWA_3 PF13768 77 - 240 1.6e-17 von Willebrand factor type A domain
VWA_2 PF13519 78 - 183 3.5e-18 von Willebrand factor type A domain
WAV3_C PF25243 373 - 440 1.6e-06 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint PF14624 429 - 525 4.5e-10 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 434, 1525, 1552
Acc36I ACCTGC 3 cut(s) 434, 1525, 1552
AccB1I GGYRCC 1 cut(s) 707
AccI GTMKAC 2 cut(s) 945, 977
AciI CCGC 3 cut(s) 92, 1129, 1521
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 3 cut(s) 157, 1137, 1230
AcuI CTGAAG 3 cut(s) 179, 486, 1170
AcvI CACGTG 1 cut(s) 862
AfaI GTAC 6 cut(s) 17, 220, 917, 973, 1013, 1480
AfiI CCNNNNNNNGG 4 cut(s) 1260, 1261, 1401, 1455
AflIII ACRYGT 2 cut(s) 859, 999
AgsI TTSAA 5 cut(s) 80, 497, 586, 725, 1286
AjiI CACGTC 1 cut(s) 1000
AjnI CCWGG 3 cut(s) 1448, 1495, 1588
AjuI GAANNNNNNNTTGG 2 cut(s) 1124, 1156
AluBI AGCT 6 cut(s) 277, 296, 1025, 1154, 1259, 1294
AluI AGCT 6 cut(s) 277, 296, 1025, 1154, 1259, 1294
Alw21I GWGCWC 2 cut(s) 68, 1204
Alw26I GTCTC 6 cut(s) 438, 850, 1066, 1430, 1450, 1466
Alw44I GTGCAC 2 cut(s) 64, 1200
AlwI GGATC 1 cut(s) 662
Ama87I CYCGRG 3 cut(s) 11, 825, 1076
AoxI GGCC 5 cut(s) 208, 323, 403, 1392, 1592
ApaLI GTGCAC 2 cut(s) 64, 1200
ApeKI GCWGC 2 cut(s) 258, 1126
ApoI RAATTY 3 cut(s) 157, 1137, 1230
ArsI GACNNNNNNTTYG 2 cut(s) 1065, 1097
Asp700I GAANNNNTTC 1 cut(s) 1372
AspS9I GGNCC 5 cut(s) 208, 323, 490, 1392, 1592
AsuC2I CCSGG 2 cut(s) 1043, 1345
AsuHPI GGTGA 4 cut(s) 841, 1064, 1418, 1511
AsuII TTCGAA 1 cut(s) 1536
AvaI CYCGRG 3 cut(s) 11, 825, 1076
AvaII GGWCC 1 cut(s) 490
AxyI CCTNAGG 1 cut(s) 967
BaeGI GKGCMC 2 cut(s) 68, 1204
BaeI ACNNNNGTAYC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 405
BanI GGYRCC 1 cut(s) 707
BbrPI CACGTG 1 cut(s) 862
BbsI GAAGAC 1 cut(s) 764
Bbv12I GWGCWC 2 cut(s) 68, 1204
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 2 cut(s) 270, 1138
BccI CCATC 6 cut(s) 67, 395, 425, 539, 856, 1177
BcgI CGANNNNNNTGC 2 cut(s) 1526, 1560
BciT130I CCWGG 3 cut(s) 1450, 1497, 1590
BcnI CCSGG 2 cut(s) 1043, 1345
BcoDI GTCTC 6 cut(s) 438, 850, 1066, 1430, 1450, 1466
BfaI CTAG 4 cut(s) 422, 612, 1022, 1401
BfmI CTRYAG 3 cut(s) 141, 342, 1483
BfuAI ACCTGC 3 cut(s) 434, 1525, 1552
BglII AGATCT 1 cut(s) 1018
BisI GCNGC 3 cut(s) 259, 1127, 1521
BlsI GCNGC 3 cut(s) 260, 1128, 1522
Bme1390I CCNGG 5 cut(s) 1043, 1345, 1450, 1497, 1590
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 3 cut(s) 11, 825, 1076
BmgBI CACGTC 1 cut(s) 1000
BmgT120I GGNCC 5 cut(s) 208, 323, 490, 1392, 1592
BmiI GGNNCC 2 cut(s) 324, 709
BmrFI CCNGG 5 cut(s) 1043, 1345, 1450, 1497, 1590
BmrI ACTGGG 2 cut(s) 512, 629
BmsI GCATC 3 cut(s) 827, 1259, 1328
BmuI ACTGGG 2 cut(s) 512, 629
BpiI GAAGAC 1 cut(s) 764
BpmI CTGGAG 4 cut(s) 368, 1230, 1432, 1479
Bpu10I CCTNAGC 3 cut(s) 24, 789, 1161
Bpu14I TTCGAA 1 cut(s) 1536
BpuEI CTTGAG 2 cut(s) 272, 458
BpuMI CCSGG 2 cut(s) 1043, 1345
BsaAI YACGTR 2 cut(s) 862, 975
BsaI GGTCTC 2 cut(s) 1066, 1466
BsaJI CCNNGG 4 cut(s) 211, 824, 1077, 1589
Bsc4I CCNNNNNNNGG 4 cut(s) 1260, 1261, 1401, 1455
Bse1I ACTGG 6 cut(s) 518, 525, 589, 635, 1218, 1395
Bse21I CCTNAGG 1 cut(s) 967
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 3 cut(s) 1450, 1497, 1590
BseDI CCNNGG 4 cut(s) 211, 824, 1077, 1589
BseGI GGATG 6 cut(s) 71, 253, 417, 531, 1038, 1250
BseLI CCNNNNNNNGG 4 cut(s) 1260, 1261, 1401, 1455
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 9 cut(s) 15, 195, 790, 803, 981, 1061, 1152, 1170, 1281
BseNI ACTGG 6 cut(s) 518, 525, 589, 635, 1218, 1395
BseRI GAGGAG 1 cut(s) 941
BseSI GKGCMC 2 cut(s) 68, 1204
BseXI GCAGC 2 cut(s) 270, 1138
BseYI CCCAGC 1 cut(s) 1259
BshFI GGCC 5 cut(s) 210, 325, 405, 1394, 1594
BshNI GGYRCC 1 cut(s) 707
BsiHKAI GWGCWC 2 cut(s) 68, 1204
BsiHKCI CYCGRG 3 cut(s) 11, 825, 1076
BsiSI CCGG 2 cut(s) 1042, 1344
BsiWI CGTACG 1 cut(s) 218
BslI CCNNNNNNNGG 4 cut(s) 1260, 1261, 1401, 1455
BsmAI GTCTC 6 cut(s) 438, 850, 1066, 1430, 1450, 1466
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 5 cut(s) 210, 325, 405, 1394, 1594
Bso31I GGTCTC 2 cut(s) 1066, 1466
BsoBI CYCGRG 3 cut(s) 11, 825, 1076
Bsp119I TTCGAA 1 cut(s) 1536
Bsp1286I GDGCHC 2 cut(s) 68, 1204
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 5 cut(s) 499, 667, 694, 1018, 1120
Bsp19I CCATGG 1 cut(s) 211
BspACI CCGC 3 cut(s) 92, 1129, 1521
BspANI GGCC 5 cut(s) 210, 325, 405, 1394, 1594
BspCNI CTCAG 9 cut(s) 16, 196, 789, 802, 980, 1062, 1153, 1171, 1282
BspLI GGNNCC 2 cut(s) 324, 709
BspMAI CTGCAG 1 cut(s) 145
BspMI ACCTGC 3 cut(s) 434, 1525, 1552
BspPI GGATC 1 cut(s) 662
BspT104I TTCGAA 1 cut(s) 1536
BspT107I GGYRCC 1 cut(s) 707
BspTNI GGTCTC 2 cut(s) 1066, 1466
BsrDI GCAATG 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 1011
BsrI ACTGG 6 cut(s) 518, 525, 589, 635, 1218, 1395
BssECI CCNNGG 4 cut(s) 211, 824, 1077, 1589
BssMI GATC 5 cut(s) 499, 667, 694, 1018, 1120
BssNAI GTATAC 1 cut(s) 978
BssT1I CCWWGG 1 cut(s) 211
Bst1107I GTATAC 1 cut(s) 978
Bst2UI CCWGG 3 cut(s) 1450, 1497, 1590
Bst4CI ACNGT 8 cut(s) 106, 241, 339, 582, 808, 1274, 1478, 1487
Bst6I CTCTTC 4 cut(s) 142, 364, 918, 1448
BstAPI GCANNNNNTGC 2 cut(s) 449, 1529
BstAUI TGTACA 1 cut(s) 1011
BstBAI YACGTR 2 cut(s) 862, 975
BstBI TTCGAA 1 cut(s) 1536
BstC8I GCNNGC 3 cut(s) 294, 684, 1350
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 6 cut(s) 71, 253, 417, 531, 1038, 1250
BstKTI GATC 5 cut(s) 502, 670, 697, 1021, 1123
BstMAI GTCTC 6 cut(s) 438, 850, 1066, 1430, 1450, 1466
BstMBI GATC 5 cut(s) 499, 667, 694, 1018, 1120
BstMWI GCNNNNNNNGC 7 cut(s) 267, 422, 449, 1100, 1214, 1256, 1529
BstNI CCWGG 3 cut(s) 1450, 1497, 1590
BstNSI RCATGY 3 cut(s) 622, 686, 1012
BstSCI CCNGG 5 cut(s) 1041, 1343, 1448, 1495, 1588
BstSFI CTRYAG 3 cut(s) 141, 342, 1483
BstSLI GKGCMC 2 cut(s) 68, 1204
BstSNI TACGTA 1 cut(s) 975
BstV1I GCAGC 2 cut(s) 270, 1138
BstV2I GAAGAC 1 cut(s) 764
BstX2I RGATCY 1 cut(s) 1018
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 1 cut(s) 1018
BstZ17I GTATAC 1 cut(s) 978
Bsu36I CCTNAGG 1 cut(s) 967
BsuRI GGCC 5 cut(s) 210, 325, 405, 1394, 1594
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 804
BtrI CACGTC 1 cut(s) 1000
BtsCI GGATG 6 cut(s) 71, 253, 417, 531, 1038, 1250
BtsI GCAGTG 1 cut(s) 1110
BtsIMutI CAGTG 4 cut(s) 259, 784, 1110, 1402
BveI ACCTGC 3 cut(s) 434, 1525, 1552
Cac8I GCNNGC 3 cut(s) 294, 684, 1350
Cfr13I GGNCC 5 cut(s) 208, 323, 490, 1392, 1592
Csp6I GTAC 6 cut(s) 16, 219, 916, 972, 1012, 1479
CviAII CATG 9 cut(s) 212, 262, 407, 619, 626, 665, 683, 1009, 1306
CviQI GTAC 6 cut(s) 16, 219, 916, 972, 1012, 1479
DpnI GATC 5 cut(s) 501, 669, 696, 1020, 1122
DpnII GATC 5 cut(s) 499, 667, 694, 1018, 1120
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 4 cut(s) 142, 364, 918, 1448
EarI CTCTTC 4 cut(s) 142, 364, 918, 1448
Eco105I TACGTA 1 cut(s) 975
Eco130I CCWWGG 1 cut(s) 211
Eco31I GGTCTC 2 cut(s) 1066, 1466
Eco47I GGWCC 1 cut(s) 490
Eco57I CTGAAG 3 cut(s) 179, 486, 1170
Eco72I CACGTG 1 cut(s) 862
Eco81I CCTNAGG 1 cut(s) 967
Eco88I CYCGRG 3 cut(s) 11, 825, 1076
EcoO109I RGGNCCY 2 cut(s) 323, 490
EcoRII CCWGG 3 cut(s) 1448, 1495, 1588
EcoT14I CCWWGG 1 cut(s) 211
EcoT22I ATGCAT 2 cut(s) 684, 1010
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 9 cut(s) 215, 265, 410, 622, 629, 668, 686, 1012, 1309
FatI CATG 9 cut(s) 211, 261, 406, 618, 625, 664, 682, 1008, 1305
FauI CCCGC 1 cut(s) 99
FblI GTMKAC 2 cut(s) 945, 977
Fnu4HI GCNGC 3 cut(s) 259, 1127, 1521
FokI GGATG 6 cut(s) 58, 260, 404, 518, 1025, 1237
Fsp4HI GCNGC 3 cut(s) 259, 1127, 1521
FspBI CTAG 4 cut(s) 422, 612, 1022, 1401
GluI GCNGC 3 cut(s) 259, 1127, 1521
GsaI CCCAGC 1 cut(s) 1263
GsuI CTGGAG 4 cut(s) 368, 1230, 1432, 1479
HaeIII GGCC 5 cut(s) 210, 325, 405, 1394, 1594
HapII CCGG 2 cut(s) 1042, 1344
Hin1II CATG 9 cut(s) 215, 265, 410, 622, 629, 668, 686, 1012, 1309
HincII GTYRAC 2 cut(s) 887, 1511
HindII GTYRAC 2 cut(s) 887, 1511
HindIII AAGCTT 1 cut(s) 275
HpaII CCGG 2 cut(s) 1042, 1344
HphI GGTGA 4 cut(s) 841, 1064, 1418, 1511
Hpy166II GTNNAC 8 cut(s) 66, 640, 887, 901, 946, 978, 1202, 1511
Hpy188I TCNGA 6 cut(s) 43, 205, 544, 694, 877, 1556
Hpy188III TCNNGA 8 cut(s) 23, 109, 197, 245, 385, 475, 791, 959
Hpy8I GTNNAC 8 cut(s) 66, 640, 887, 901, 946, 978, 1202, 1511
HpyAV CCTTC 5 cut(s) 46, 203, 260, 461, 498
HpyCH4III ACNGT 8 cut(s) 106, 241, 339, 582, 808, 1274, 1478, 1487
HpyCH4IV ACGT 4 cut(s) 861, 903, 974, 999
HpyF10VI GCNNNNNNNGC 7 cut(s) 267, 422, 449, 1100, 1214, 1256, 1529
HpySE526I ACGT 4 cut(s) 861, 903, 974, 999
Hsp92II CATG 9 cut(s) 215, 265, 410, 622, 629, 668, 686, 1012, 1309
Kzo9I GATC 5 cut(s) 499, 667, 694, 1018, 1120
LmnI GCTCC 1 cut(s) 1498
Lsp1109I GCAGC 2 cut(s) 270, 1138
LweI GCATC 3 cut(s) 827, 1259, 1328
MaeI CTAG 4 cut(s) 422, 612, 1022, 1401
MaeII ACGT 4 cut(s) 861, 903, 974, 999
MaeIII GTNAC 3 cut(s) 235, 298, 1406
MalI GATC 5 cut(s) 501, 669, 696, 1020, 1122
MboI GATC 5 cut(s) 499, 667, 694, 1018, 1120
MboII GAAGA 7 cut(s) 129, 381, 509, 764, 844, 935, 1465
MflI RGATCY 1 cut(s) 1018
MhlI GDGCHC 2 cut(s) 68, 1204
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 7 cut(s) 157, 483, 935, 1137, 1230, 1276, 1429
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 6 cut(s) 106, 131, 381, 440, 465, 740
MmeI TCCRAC 2 cut(s) 712, 886
Mox20I TGGCCA 1 cut(s) 405
Mph1103I ATGCAT 2 cut(s) 684, 1010
MroXI GAANNNNTTC 1 cut(s) 1372
MscI TGGCCA 1 cut(s) 405
MseI TTAA 2 cut(s) 486, 1238
MslI CAYNNNNRTG 3 cut(s) 411, 864, 1043
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 1129
MspI CCGG 2 cut(s) 1042, 1344
MspR9I CCNGG 5 cut(s) 1043, 1345, 1450, 1497, 1590
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 3 cut(s) 1450, 1497, 1590
MwoI GCNNNNNNNGC 7 cut(s) 267, 422, 449, 1100, 1214, 1256, 1529
NciI CCSGG 2 cut(s) 1043, 1345
NcoI CCATGG 1 cut(s) 211
NdeII GATC 5 cut(s) 499, 667, 694, 1018, 1120
NlaIII CATG 9 cut(s) 215, 265, 410, 622, 629, 668, 686, 1012, 1309
NlaIV GGNNCC 2 cut(s) 324, 709
NmuCI GTSAC 3 cut(s) 235, 298, 1406
NsiI ATGCAT 2 cut(s) 684, 1010
NspI RCATGY 3 cut(s) 622, 686, 1012
NspV TTCGAA 1 cut(s) 1536
PaeI GCATGC 1 cut(s) 686
PaqCI CACCTGC 3 cut(s) 434, 1525, 1552
PctI GAATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 1372
PfeI GAWTC 7 cut(s) 146, 200, 599, 604, 725, 962, 1368
Pfl23II CGTACG 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 1448
PkrI GCNGC 3 cut(s) 260, 1128, 1522
PleI GAGTC 6 cut(s) 106, 130, 380, 439, 465, 740
PmaCI CACGTG 1 cut(s) 862
PmlI CACGTG 1 cut(s) 862
PpsI GAGTC 6 cut(s) 106, 130, 380, 439, 465, 740
Ppu21I YACGTR 2 cut(s) 862, 975
PpuMI RGGWCCY 1 cut(s) 490
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 3 cut(s) 1448, 1495, 1588
PspCI CACGTG 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 1259
PspGI CCWGG 3 cut(s) 1448, 1495, 1588
PspLI CGTACG 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 324, 709
PspPI GGNCC 5 cut(s) 208, 323, 490, 1392, 1592
PspPPI RGGWCCY 1 cut(s) 490
PstI CTGCAG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 1018
RsaI GTAC 6 cut(s) 17, 220, 917, 973, 1013, 1480
RsaNI GTAC 6 cut(s) 16, 219, 916, 972, 1012, 1479
RseI CAYNNNNRTG 3 cut(s) 411, 864, 1043
SaqAI TTAA 2 cut(s) 486, 1238
SatI GCNGC 3 cut(s) 259, 1127, 1521
Sau3AI GATC 5 cut(s) 499, 667, 694, 1018, 1120
Sau96I GGNCC 5 cut(s) 208, 323, 490, 1392, 1592
SchI GAGTC 6 cut(s) 106, 131, 381, 440, 465, 740
ScrFI CCNGG 5 cut(s) 1043, 1345, 1450, 1497, 1590
SduI GDGCHC 2 cut(s) 68, 1204
SfaNI GCATC 3 cut(s) 827, 1259, 1328
SfcI CTRYAG 3 cut(s) 141, 342, 1483
SfuI TTCGAA 1 cut(s) 1536
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 3 cut(s) 411, 864, 1043
SmlI CTYRAG 2 cut(s) 287, 473
SmoI CTYRAG 2 cut(s) 287, 473
SnaBI TACGTA 1 cut(s) 975
SphI GCATGC 1 cut(s) 686
Sse9I AATT 7 cut(s) 157, 483, 935, 1137, 1230, 1276, 1429
SsiI CCGC 3 cut(s) 92, 1129, 1521
SspI AATATT 1 cut(s) 1192
SspMI CTAG 4 cut(s) 422, 612, 1022, 1401
StyD4I CCNGG 5 cut(s) 1041, 1343, 1448, 1495, 1588
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 8 cut(s) 106, 241, 339, 582, 808, 1274, 1478, 1487
TaiI ACGT 4 cut(s) 864, 906, 977, 1002
TaqI TCGA 4 cut(s) 502, 565, 602, 1536
TasI AATT 7 cut(s) 157, 483, 935, 1137, 1230, 1276, 1429
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 1 cut(s) 1523
TfiI GAWTC 7 cut(s) 146, 200, 599, 604, 725, 962, 1368
Tru1I TTAA 2 cut(s) 486, 1238
Tru9I TTAA 2 cut(s) 486, 1238
TscAI CASTG 4 cut(s) 259, 784, 1110, 1402
TseFI GTSAC 3 cut(s) 235, 298, 1406
TseI GCWGC 2 cut(s) 258, 1126
Tsp45I GTSAC 3 cut(s) 235, 298, 1406
TspDTI ATGAA 6 cut(s) 63, 423, 642, 709, 1047, 1340
TspGWI ACGGA 3 cut(s) 134, 1237, 1454
TspRI CASTG 4 cut(s) 259, 784, 1110, 1402
VneI GTGCAC 2 cut(s) 64, 1200
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 3 cut(s) 157, 1137, 1230
XceI RCATGY 3 cut(s) 622, 686, 1012
XmiI GTMKAC 2 cut(s) 945, 977
XmnI GAANNNNTTC 1 cut(s) 1372
XspI CTAG 4 cut(s) 422, 612, 1022, 1401
Zsp2I ATGCAT 2 cut(s) 684, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.