Rh5DG138700

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000360
Physical Location & Seq
Forward (+)
13976431 .. 13978168
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG138700.1

Sequence Viewer

Length: 1578 bp
ATGCAGGAACCCGAGAACCCTCCTGAGCCACCTACCTTCTCAGACGATGAACCTCTCCAATCGTCAACCTCACCTATTCAATCCCTTGTCCCCCAGAAAATAACACTTAAGACTCATACAGAGTCCTCTGCTATCTCTGCGGCAGAATCAAGCCCAAATTTTCCTGTCCTTGTCAGTATTCTTGCACCACACCTTAATGATTCTGAAGGCCATGGTCGTACGCCCATTGACCTCGTAACAGTTTTAGACGTAAGTGGCAGCATGCGAGGCACAAAGATTTCCTTTCTCAAGCAAGCTGTCACATTTGTCATAGAAAACTTGGGGCCTTCGGATAGACTTTCTATTGTTTCGTTCTCATCAAGTTCTAGAAGAATCTTTCCTCTCCAGAGAATGTCCGTTGATGGTCGTGAAAGTGCCATCCTAGCCATTGAGTCTCTTAGAGCAGGTGGTGCAACTAACATTGCAGAAGGACTGAAGAAAGGAACTAAGGTCCTTGAAGATCGAAGGGAAAGAAACCCAGTTTCCAGCATCATCCTCTTATCTGATGGCAAAGATACATACAATACAACTGCAAACCGACTGTTGAACCAGTTGCCTGATTCGATTCGTTCTAGCAACACGCAACAGGAAACCCCAGTCCACACATTTGGATTTGGCTACGATCATGATCCCAGCATTATGCATGCTATATCTGATGTGTCAGGTGGCACCTTTTCGTTCATTGAATCAGTTGAAATTATACAAGACTCCTTTGCTCTGTGTATTGGGGGTCTTCTCAGTGTTGTGGCTCAGGAAGTTCGCCTAACAGTAAGATCAGCATCACCTGGGGTGAAGATTTTAGCAATACCATCAGGGAGACATGTGAATGAGATTTCTGATGGTCAGCAAGGTGTTGTTCATGTTGGAAATATGTATGCTGAAGAGGAAAAACAATTTCTGGTCTACCTAACAGTTCCAGAATCGTCCGCTCCACATACTAAGACGTCATTGTTAGAGGTGTTATGCATGTACAAAGATCTAGCTTCAAATGAGTTGATGGAGGTGCAAGGTGAGAAAATAGAGATACTGAGACCTGAGGTTTGTTCCCCTGCTGAAAAGACTGTTTCTTTGGAGGTTGATCGGCAGCGGAACAGAATATTGGTGGCTGAAGCTATAGCTGAGGCACAAAGGTTGGCTGAGAATGGAAATCTGGAGGGTGCACAGGCTCTTTTGGCTCAACGGAAAGAAATTCTCTCAACATCAACAACAGCCCAAGCCGGGGATTTTCAGAGTAATTTGTTTGAAACTGAGCTTAAAGAAATGATGGATAGAATGGCAAGTATGAAGTTGTATAAACGAACCGGGCATGCTTACGCTCTCTCAGGACTCAGTTCCCATAAGTTGCAAAGGGCCACAACTAGGAAGTGTCGTAGGGTTTCCCATAGTGGGGGCTTTGAAGGTCGCAAGGCTTCCGGTGCTTCATCAGGTGCTACTCCAGGTGAATCGCCTGCCGCCGTTGGTGCTTTTGAAACACCTGCTATGGTCAGAATGGTAGAAAAATCACAGAAGAGGAATCAACCTGCGCCAGACCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

525

Amino Acids

56.87

Weight (kDa)

5.83

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_CoxE PF05762 73 - 189 4.3e-07 VWA domain containing CoxE-like protein
VWA PF00092 77 - 243 2.4e-21 von Willebrand factor type A domain
VWA_3 PF13768 77 - 240 2.6e-19 von Willebrand factor type A domain
VWA_2 PF13519 78 - 184 2.2e-18 von Willebrand factor type A domain
WAV3_C PF25243 372 - 439 1.5e-06 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint PF14624 429 - 516 3.9e-12 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 434, 1522
AatII GACGTC 1 cut(s) 986
Acc36I ACCTGC 3 cut(s) 434, 1522, 1567
AccB1I GGYRCC 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 968
AccI GTMKAC 1 cut(s) 942
AciI CCGC 4 cut(s) 140, 966, 1126, 1491
AclWI GGATC 1 cut(s) 662
AcsI RAATTY 2 cut(s) 157, 1227
AcuI CTGAAG 4 cut(s) 225, 494, 939, 1167
AcyI GRCGYC 1 cut(s) 983
AfaI GTAC 2 cut(s) 220, 1010
AfiI CCNNNNNNNGG 5 cut(s) 1257, 1258, 1398, 1425, 1426
AflII CTTAAG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 859
AgsI TTSAA 9 cut(s) 80, 497, 586, 725, 734, 1026, 1283, 1436, 1508
AjnI CCWGG 2 cut(s) 823, 1474
AjuI GAANNNNNNNTTGG 2 cut(s) 1121, 1153
AluBI AGCT 5 cut(s) 296, 1022, 1151, 1157, 1291
AluI AGCT 5 cut(s) 296, 1022, 1151, 1157, 1291
Alw21I GWGCWC 1 cut(s) 1201
Alw26I GTCTC 3 cut(s) 438, 850, 1063
Alw44I GTGCAC 1 cut(s) 1197
AlwI GGATC 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 3 cut(s) 208, 323, 1389
ApaLI GTGCAC 1 cut(s) 1197
ApeKI GCWGC 2 cut(s) 258, 1123
ApoI RAATTY 2 cut(s) 157, 1227
ArsI GACNNNNNNTTYG 4 cut(s) 1062, 1090, 1094, 1122
AspLEI GCGC 1 cut(s) 1564
AspS9I GGNCC 3 cut(s) 323, 490, 1389
AsuC2I CCSGG 2 cut(s) 1258, 1342
AsuHPI GGTGA 5 cut(s) 63, 813, 841, 1061, 1490
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 1 cut(s) 490
AxyI CCTNAGG 1 cut(s) 1074
BaeGI GKGCMC 1 cut(s) 1201
BanI GGYRCC 1 cut(s) 707
BbsI GAAGAC 1 cut(s) 764
Bbv12I GWGCWC 1 cut(s) 1201
BbvCI CCTCAGC 1 cut(s) 1158
BbvI GCAGC 2 cut(s) 270, 1135
BccI CCATC 7 cut(s) 395, 425, 539, 856, 872, 1030, 1297
BceAI ACGGC 1 cut(s) 1478
BciT130I CCWGG 2 cut(s) 825, 1476
BcnI CCSGG 2 cut(s) 1258, 1342
BcoDI GTCTC 3 cut(s) 438, 850, 1063
BfaI CTAG 5 cut(s) 366, 422, 612, 1019, 1398
BfmI CTRYAG 1 cut(s) 1152
BfrI CTTAAG 1 cut(s) 107
BfuAI ACCTGC 3 cut(s) 434, 1522, 1567
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 4 cut(s) 141, 259, 1124, 1491
BlsI GCNGC 4 cut(s) 142, 260, 1125, 1492
Bme1390I CCNGG 4 cut(s) 825, 1258, 1342, 1476
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 3 cut(s) 323, 490, 1389
BmiI GGNNCC 3 cut(s) 9, 324, 709
BmrFI CCNGG 4 cut(s) 825, 1258, 1342, 1476
BmrI ACTGGG 2 cut(s) 512, 629
BmsI GCATC 2 cut(s) 537, 827
BmuI ACTGGG 2 cut(s) 512, 629
BpiI GAAGAC 1 cut(s) 764
BpmI CTGGAG 3 cut(s) 368, 1211, 1458
Bpu10I CCTNAGC 3 cut(s) 24, 789, 1158
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 1258, 1342
BsaBI GATNNNNATC 2 cut(s) 666, 817
BsaHI GRCGYC 1 cut(s) 983
BsaI GGTCTC 1 cut(s) 1063
BsaJI CCNNGG 3 cut(s) 211, 824, 1257
BsaWI WCCGGW 1 cut(s) 1451
Bsc4I CCNNNNNNNGG 5 cut(s) 1257, 1258, 1398, 1425, 1426
Bse1I ACTGG 3 cut(s) 518, 589, 635
Bse21I CCTNAGG 1 cut(s) 1074
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 2 cut(s) 666, 817
BseBI CCWGG 2 cut(s) 825, 1476
BseDI CCNNGG 3 cut(s) 211, 824, 1257
BseGI GGATG 2 cut(s) 417, 531
BseJI GATNNNNATC 2 cut(s) 666, 817
BseLI CCNNNNNNNGG 5 cut(s) 1257, 1258, 1398, 1425, 1426
BseMI GCAATG 1 cut(s) 459
BseNI ACTGG 3 cut(s) 518, 589, 635
BseSI GKGCMC 1 cut(s) 1201
BseXI GCAGC 2 cut(s) 270, 1135
BseYI CCCAGC 1 cut(s) 671
BshFI GGCC 3 cut(s) 210, 325, 1391
BshNI GGYRCC 1 cut(s) 707
BsiHKAI GWGCWC 1 cut(s) 1201
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 3 cut(s) 1257, 1341, 1452
BsiWI CGTACG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 5 cut(s) 1257, 1258, 1398, 1425, 1426
BsmAI GTCTC 3 cut(s) 438, 850, 1063
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 3 cut(s) 210, 325, 1391
Bso31I GGTCTC 1 cut(s) 1063
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 1201
Bsp1407I TGTACA 1 cut(s) 1008
Bsp143I GATC 6 cut(s) 499, 661, 667, 812, 1015, 1117
Bsp19I CCATGG 1 cut(s) 211
BspACI CCGC 4 cut(s) 140, 966, 1126, 1491
BspANI GGCC 3 cut(s) 210, 325, 1391
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 3 cut(s) 9, 324, 709
BspMI ACCTGC 3 cut(s) 434, 1522, 1567
BspPI GGATC 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 707
BspTI CTTAAG 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 1063
BsrBI CCGCTC 1 cut(s) 968
BsrDI GCAATG 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 1008
BsrI ACTGG 3 cut(s) 518, 589, 635
BssECI CCNNGG 3 cut(s) 211, 824, 1257
BssMI GATC 6 cut(s) 499, 661, 667, 812, 1015, 1117
BssNI GRCGYC 1 cut(s) 983
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 825, 1476
Bst4CI ACNGT 5 cut(s) 241, 582, 808, 952, 1102
Bst6I CTCTTC 2 cut(s) 915, 1541
BstACI GRCGYC 1 cut(s) 983
BstAFI CTTAAG 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 449
BstAUI TGTACA 1 cut(s) 1008
BstC8I GCNNGC 5 cut(s) 263, 294, 684, 1347, 1488
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 417, 531
BstHHI GCGC 1 cut(s) 1564
BstKTI GATC 6 cut(s) 502, 664, 670, 815, 1018, 1120
BstMAI GTCTC 3 cut(s) 438, 850, 1063
BstMBI GATC 6 cut(s) 499, 661, 667, 812, 1015, 1117
BstMWI GCNNNNNNNGC 7 cut(s) 137, 267, 422, 449, 1211, 1454, 1499
BstNI CCWGG 2 cut(s) 825, 1476
BstNSI RCATGY 5 cut(s) 265, 686, 863, 1009, 1349
BstSCI CCNGG 4 cut(s) 823, 1256, 1340, 1474
BstSFI CTRYAG 1 cut(s) 1152
BstSLI GKGCMC 1 cut(s) 1201
BstV1I GCAGC 2 cut(s) 270, 1135
BstV2I GAAGAC 1 cut(s) 764
BstX2I RGATCY 1 cut(s) 1015
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 1 cut(s) 1015
Bsu36I CCTNAGG 1 cut(s) 1074
BsuRI GGCC 3 cut(s) 210, 325, 1391
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 2 cut(s) 417, 531
BtsIMutI CAGTG 1 cut(s) 784
BveI ACCTGC 3 cut(s) 434, 1522, 1567
Cac8I GCNNGC 5 cut(s) 263, 294, 684, 1347, 1488
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 1564
Cfr13I GGNCC 3 cut(s) 323, 490, 1389
Csp6I GTAC 2 cut(s) 219, 1009
CviAII CATG 8 cut(s) 212, 262, 665, 683, 860, 899, 1006, 1346
CviQI GTAC 2 cut(s) 219, 1009
DpnI GATC 6 cut(s) 501, 663, 669, 814, 1017, 1119
DpnII GATC 6 cut(s) 499, 661, 667, 812, 1015, 1117
Eam1104I CTCTTC 2 cut(s) 915, 1541
EarI CTCTTC 2 cut(s) 915, 1541
Eco130I CCWWGG 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 1063
Eco47I GGWCC 1 cut(s) 490
Eco57I CTGAAG 4 cut(s) 225, 494, 939, 1167
Eco81I CCTNAGG 1 cut(s) 1074
Eco88I CYCGRG 1 cut(s) 11
EcoO109I RGGNCCY 2 cut(s) 323, 490
EcoRII CCWGG 2 cut(s) 823, 1474
EcoT14I CCWWGG 1 cut(s) 211
EcoT22I ATGCAT 2 cut(s) 684, 1007
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 8 cut(s) 215, 265, 668, 686, 863, 902, 1009, 1349
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 74
FatI CATG 8 cut(s) 211, 261, 664, 682, 859, 898, 1005, 1345
FblI GTMKAC 1 cut(s) 942
Fnu4HI GCNGC 4 cut(s) 141, 259, 1124, 1491
FokI GGATG 2 cut(s) 404, 518
Fsp4HI GCNGC 4 cut(s) 141, 259, 1124, 1491
FspBI CTAG 5 cut(s) 366, 422, 612, 1019, 1398
GlaI GCGC 1 cut(s) 1563
GluI GCNGC 4 cut(s) 141, 259, 1124, 1491
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 3 cut(s) 368, 1211, 1458
HaeIII GGCC 3 cut(s) 210, 325, 1391
HapII CCGG 3 cut(s) 1257, 1341, 1452
HhaI GCGC 1 cut(s) 1564
Hin1I GRCGYC 1 cut(s) 983
Hin1II CATG 8 cut(s) 215, 265, 668, 686, 863, 902, 1009, 1349
Hin6I GCGC 1 cut(s) 1562
HinP1I GCGC 1 cut(s) 1562
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HpaII CCGG 3 cut(s) 1257, 1341, 1452
HphI GGTGA 5 cut(s) 63, 813, 841, 1061, 1490
Hpy166II GTNNAC 4 cut(s) 66, 640, 943, 1199
Hpy188I TCNGA 8 cut(s) 43, 205, 331, 544, 694, 877, 1269, 1526
Hpy188III TCNNGA 9 cut(s) 23, 366, 385, 407, 665, 791, 956, 1190, 1362
Hpy8I GTNNAC 4 cut(s) 66, 640, 943, 1199
HpyAV CCTTC 6 cut(s) 46, 200, 336, 461, 498, 1430
HpyCH4III ACNGT 5 cut(s) 241, 582, 808, 952, 1102
HpyCH4IV ACGT 2 cut(s) 249, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 267, 422, 449, 1211, 1454, 1499
HpySE526I ACGT 2 cut(s) 249, 983
Hsp92I GRCGYC 1 cut(s) 983
Hsp92II CATG 8 cut(s) 215, 265, 668, 686, 863, 902, 1009, 1349
HspAI GCGC 1 cut(s) 1562
Kzo9I GATC 6 cut(s) 499, 661, 667, 812, 1015, 1117
LmnI GCTCC 1 cut(s) 973
Lsp1109I GCAGC 2 cut(s) 270, 1135
LweI GCATC 2 cut(s) 537, 827
MaeI CTAG 5 cut(s) 366, 422, 612, 1019, 1398
MaeII ACGT 2 cut(s) 249, 983
MaeIII GTNAC 2 cut(s) 235, 298
MalI GATC 6 cut(s) 501, 663, 669, 814, 1017, 1119
MbiI CCGCTC 1 cut(s) 968
MboI GATC 6 cut(s) 499, 661, 667, 812, 1015, 1117
MboII GAAGA 7 cut(s) 381, 487, 509, 764, 844, 932, 1558
MflI RGATCY 1 cut(s) 1015
MhlI GDGCHC 1 cut(s) 1201
MluCI AATT 5 cut(s) 157, 735, 932, 1227, 1273
MlyI GAGTC 5 cut(s) 106, 131, 440, 740, 1359
MmeI TCCRAC 1 cut(s) 883
Mph1103I ATGCAT 2 cut(s) 684, 1007
MseI TTAA 3 cut(s) 108, 195, 1293
MslI CAYNNNNRTG 2 cut(s) 195, 864
MspA1I CMGCKG 1 cut(s) 1126
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 3 cut(s) 1257, 1341, 1452
MspR9I CCNGG 4 cut(s) 825, 1258, 1342, 1476
MvaI CCWGG 2 cut(s) 825, 1476
MwoI GCNNNNNNNGC 7 cut(s) 137, 267, 422, 449, 1211, 1454, 1499
NciI CCSGG 2 cut(s) 1258, 1342
NcoI CCATGG 1 cut(s) 211
NdeII GATC 6 cut(s) 499, 661, 667, 812, 1015, 1117
NlaIII CATG 8 cut(s) 215, 265, 668, 686, 863, 902, 1009, 1349
NlaIV GGNNCC 3 cut(s) 9, 324, 709
NmuCI GTSAC 1 cut(s) 298
NsiI ATGCAT 2 cut(s) 684, 1007
NspI RCATGY 5 cut(s) 265, 686, 863, 1009, 1349
PaeI GCATGC 3 cut(s) 265, 686, 1349
PagI TCATGA 1 cut(s) 664
PaqCI CACCTGC 2 cut(s) 434, 1522
PciI ACATGT 1 cut(s) 859
PfeI GAWTC 9 cut(s) 146, 200, 372, 599, 604, 725, 959, 1481, 1552
Pfl23II CGTACG 1 cut(s) 218
PflFI GACNNNGTC 1 cut(s) 1571
PkrI GCNGC 4 cut(s) 142, 260, 1125, 1492
PleI GAGTC 5 cut(s) 106, 130, 439, 740, 1359
PpsI GAGTC 5 cut(s) 106, 130, 439, 740, 1359
PpuMI RGGWCCY 1 cut(s) 490
PscI ACATGT 1 cut(s) 859
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 823, 1474
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 2 cut(s) 823, 1474
PspLI CGTACG 1 cut(s) 218
PspN4I GGNNCC 3 cut(s) 9, 324, 709
PspPI GGNCC 3 cut(s) 323, 490, 1389
PspPPI RGGWCCY 1 cut(s) 490
PsuI RGATCY 1 cut(s) 1015
PsyI GACNNNGTC 1 cut(s) 1571
RsaI GTAC 2 cut(s) 220, 1010
RsaNI GTAC 2 cut(s) 219, 1009
RseI CAYNNNNRTG 2 cut(s) 195, 864
SaqAI TTAA 3 cut(s) 108, 195, 1293
SatI GCNGC 4 cut(s) 141, 259, 1124, 1491
Sau3AI GATC 6 cut(s) 499, 661, 667, 812, 1015, 1117
Sau96I GGNCC 3 cut(s) 323, 490, 1389
SchI GAGTC 5 cut(s) 106, 131, 440, 740, 1359
ScrFI CCNGG 4 cut(s) 825, 1258, 1342, 1476
SduI GDGCHC 1 cut(s) 1201
SfaNI GCATC 2 cut(s) 537, 827
SfcI CTRYAG 1 cut(s) 1152
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 2 cut(s) 195, 864
SmlI CTYRAG 2 cut(s) 107, 287
SmoI CTYRAG 2 cut(s) 107, 287
SphI GCATGC 3 cut(s) 265, 686, 1349
Sse9I AATT 5 cut(s) 157, 735, 932, 1227, 1273
SsiI CCGC 4 cut(s) 140, 966, 1126, 1491
SspI AATATT 1 cut(s) 1137
SspMI CTAG 5 cut(s) 366, 422, 612, 1019, 1398
StyD4I CCNGG 4 cut(s) 823, 1256, 1340, 1474
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 5 cut(s) 241, 582, 808, 952, 1102
TaiI ACGT 2 cut(s) 252, 986
TaqI TCGA 2 cut(s) 502, 602
TasI AATT 5 cut(s) 157, 735, 932, 1227, 1273
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 2 cut(s) 143, 1493
TfiI GAWTC 9 cut(s) 146, 200, 372, 599, 604, 725, 959, 1481, 1552
Tru1I TTAA 3 cut(s) 108, 195, 1293
Tru9I TTAA 3 cut(s) 108, 195, 1293
TscAI CASTG 1 cut(s) 784
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 258, 1123
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 5 cut(s) 63, 709, 887, 1337, 1449
TspGWI ACGGA 2 cut(s) 385, 1234
TspRI CASTG 1 cut(s) 784
Tth111I GACNNNGTC 1 cut(s) 1571
Vha464I CTTAAG 1 cut(s) 107
VneI GTGCAC 1 cut(s) 1197
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 2 cut(s) 157, 1227
XbaI TCTAGA 1 cut(s) 365
XceI RCATGY 5 cut(s) 265, 686, 863, 1009, 1349
XmiI GTMKAC 1 cut(s) 942
XspI CTAG 5 cut(s) 366, 422, 612, 1019, 1398
ZraI GACGTC 1 cut(s) 984
Zsp2I ATGCAT 2 cut(s) 684, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.