AT1G23150

Uncharacterized protein At4g22758-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014102
Physical Location & Seq
Forward (+)
8206549 .. 8207618
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23150.1

Sequence Viewer

Length: 426 bp
ATGTTGCTTTACAAGAAAAAGAATCAGATTGTTAAAGGAAACAGAATCTTGATCAGCGTAACGTTTCTTGGTAGTGCTGGTCCGATCCGGTTCGTTGCTAATGAAGGTGATCTTGTTGCATCTGTGATTGATACTGCTTTGAAATGTTATGCTCGTGAAGGTCGTCTTCCTATTCTTGGATCTGATTTCAACGATTTTGTTTTTTATTGTCCAATGGTTGGACCTGGAGCTTTGAGTCCATGGGAAGCAATTGGGTCGGTGGGAGTGAGGAACTTTATGTTGTGTAAGAAGAAACCAGAGGAGAAGAAGGTTGAGGAAGATAAGGGAAGATCGAATTTTCCGATTAATGGAGCTAGAAAAGGAGCTGGTGGAAGTTTTAAGGCTTGGATTAATAAATCTTTAAGACTTAAAGTGACTACCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.49

Weight (kDa)

9.84

Isoelectric Point (pI)

21.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7054 PF23156 13 - 95 1.5e-27 Domain of unknown function (DUF7054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23150 AT1G70780
fragaria_vesca FvH4_4g32830
malus_domestica MD13G1022300.v1.1 MD16G1023400.v1.1
prunus_persica Prupe.1G329500_v2.0.a1
pyrus_communis pycom13g02080
rosa_chinensis RchiOBHm_Chr4g0441841
rosa_laevigata RLG00000006061
rosa_multiflora Rmu_sc0008316.1_g000006
rosa_roxburghii Rroxscaffold_5G00382670
rosa_rugosa Rorug04G0336600
rosa_samantha Rh4AG388000 Rh4BG401700 Rh4CG416700 Rh4DG395100
rosa_wichuraiana Rw4G033500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AclI AACGTT 1 cut(s) 62
AclWI GGATC 2 cut(s) 79, 187
AcsI RAATTY 1 cut(s) 334
AfiI CCNNNNNNNGG 3 cut(s) 176, 218, 347
AgsI TTSAA 2 cut(s) 142, 190
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 3 cut(s) 230, 353, 365
AluI AGCT 3 cut(s) 230, 353, 365
AlwI GGATC 2 cut(s) 79, 187
ApoI RAATTY 1 cut(s) 334
AseI ATTAAT 2 cut(s) 345, 390
AspS9I GGNCC 2 cut(s) 80, 221
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 2 cut(s) 80, 221
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 1 cut(s) 51
BfaI CTAG 1 cut(s) 354
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 2 cut(s) 80, 221
BmgT120I GGNCC 2 cut(s) 80, 221
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 218, 347
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 3 cut(s) 176, 218, 347
BseRI GAGGAG 1 cut(s) 314
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 3 cut(s) 176, 218, 347
Bsp143I GATC 5 cut(s) 51, 84, 109, 179, 329
Bsp19I CCATGG 1 cut(s) 239
BspPI GGATC 2 cut(s) 79, 187
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 5 cut(s) 51, 84, 109, 179, 329
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 239
BstKTI GATC 5 cut(s) 54, 87, 112, 182, 332
BstMBI GATC 5 cut(s) 51, 84, 109, 179, 329
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 80, 221
CviAII CATG 1 cut(s) 240
CviJI RGCY 4 cut(s) 230, 353, 365, 383
CviKI_1 RGCY 4 cut(s) 230, 353, 365, 383
DpnI GATC 5 cut(s) 53, 86, 111, 181, 331
DpnII GATC 5 cut(s) 51, 84, 109, 179, 329
Eco130I CCWWGG 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 80, 221
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 243
FaiI YATR 3 cut(s) 150, 241, 278
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 150, 182
FatI CATG 1 cut(s) 239
FbaI TGATCA 1 cut(s) 51
FspBI CTAG 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 246
HapII CCGG 1 cut(s) 88
Hin1II CATG 1 cut(s) 243
HinfI GANTC 3 cut(s) 22, 45, 235
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 4 cut(s) 27, 84, 184, 342
Hpy188III TCNNGA 2 cut(s) 49, 155
HpyAV CCTTC 3 cut(s) 98, 152, 301
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 5 cut(s) 51, 84, 109, 179, 329
LmnI GCTCC 3 cut(s) 227, 350, 362
LpnPI CCDG 6 cut(s) 63, 101, 210, 237, 309, 351
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 58, 412
MalI GATC 5 cut(s) 53, 86, 111, 181, 331
MboI GATC 5 cut(s) 51, 84, 109, 179, 329
MboII GAAGA 5 cut(s) 158, 301, 316, 329, 339
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 179
MluCI AATT 2 cut(s) 249, 334
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 3 cut(s) 261, 292, 307
MseI TTAA 6 cut(s) 33, 345, 378, 390, 401, 408
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 225
MunI CAATTG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 239
NdeII GATC 5 cut(s) 51, 84, 109, 179, 329
NlaIII CATG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 412
PcsI WCGNNNNNNNCGW 2 cut(s) 160, 338
PfeI GAWTC 2 cut(s) 22, 45
PflMI CCANNNNNTGG 1 cut(s) 218
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PshBI ATTAAT 2 cut(s) 345, 390
Psp1406I AACGTT 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspPI GGNCC 2 cut(s) 80, 221
PsuI RGATCY 1 cut(s) 179
SaqAI TTAA 6 cut(s) 33, 345, 378, 390, 401, 408
Sau3AI GATC 5 cut(s) 51, 84, 109, 179, 329
Sau96I GGNCC 2 cut(s) 80, 221
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 225
SetI ASST 8 cut(s) 65, 109, 163, 226, 232, 312, 355, 367
SfaNI GCATC 1 cut(s) 128
SinI GGWCC 2 cut(s) 80, 221
Sse9I AATT 2 cut(s) 249, 334
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 239
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 332
TasI AATT 2 cut(s) 249, 334
TfiI GAWTC 2 cut(s) 22, 45
Tru1I TTAA 6 cut(s) 33, 345, 378, 390, 401, 408
Tru9I TTAA 6 cut(s) 33, 345, 378, 390, 401, 408
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 80, 221
VspI ATTAAT 2 cut(s) 345, 390
XapI RAATTY 1 cut(s) 334
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.