AT1G70780

Uncharacterized protein At4g22758-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014102
Physical Location & Seq
Reverse (-)
26695166 .. 26696392
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70780.1

Sequence Viewer

Length: 423 bp
ATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGGATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTATGAGGATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAAGGTTACGCTCGTGAAGGTCGTCTTCCTCTTCTTGGATCTGATTTCAATGATTTTCTTCTCTATTGTCCTATGGTTGGACCTGAAGCTTTAAGCACATGGGATGCAATTGGATCTCTTGGAGCGAGGAACTTTATGCTCTGTAGGAAACCAGAGGAGAAGAAGGTTGAGGAAAGTAATGGAAGATCTGACTCTACCATTAATGGTGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTCTCAAGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

9.45

Isoelectric Point (pI)

21.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7054 PF23156 15 - 97 1.8e-28 Domain of unknown function (DUF7054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23150 AT1G70780
fragaria_vesca FvH4_4g32830
malus_domestica MD13G1022300.v1.1 MD16G1023400.v1.1
prunus_persica Prupe.1G329500_v2.0.a1
pyrus_communis pycom13g02080
rosa_chinensis RchiOBHm_Chr4g0441841
rosa_laevigata RLG00000006061
rosa_multiflora Rmu_sc0008316.1_g000006
rosa_roxburghii Rroxscaffold_5G00382670
rosa_rugosa Rorug04G0336600
rosa_samantha Rh4AG388000 Rh4BG401700 Rh4CG416700 Rh4DG395100
rosa_wichuraiana Rw4G033500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 85, 193, 268, 392
AcuI CTGAAG 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 182, 224
AgsI TTSAA 3 cut(s) 196, 376, 400
AluBI AGCT 2 cut(s) 236, 372
AluI AGCT 2 cut(s) 236, 372
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 4 cut(s) 85, 193, 268, 392
AseI ATTAAT 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 86, 227
AvaII GGWCC 2 cut(s) 86, 227
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 415
BfmI CTRYAG 1 cut(s) 289
BglII AGATCT 1 cut(s) 332
Bme18I GGWCC 2 cut(s) 86, 227
BmgT120I GGNCC 2 cut(s) 86, 227
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 224
Bse118I RCCGGY 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 135
BseGI GGATG 2 cut(s) 118, 256
BseLI CCNNNNNNNGG 2 cut(s) 182, 224
BseRI GAGGAG 1 cut(s) 317
BshVI ATCGAT 1 cut(s) 135
BsiSI CCGG 2 cut(s) 84, 94
BslI CCNNNNNNNGG 2 cut(s) 182, 224
BsmAI GTCTC 1 cut(s) 415
Bsp143I GATC 6 cut(s) 90, 115, 185, 260, 332, 384
BspDI ATCGAT 1 cut(s) 135
BspPI GGATC 4 cut(s) 85, 193, 268, 392
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssMI GATC 6 cut(s) 90, 115, 185, 260, 332, 384
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 183
BstF5I GGATG 2 cut(s) 118, 256
BstKTI GATC 6 cut(s) 93, 118, 188, 263, 335, 387
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 6 cut(s) 90, 115, 185, 260, 332, 384
BstSFI CTRYAG 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 3 cut(s) 185, 260, 332
BstYI RGATCY 3 cut(s) 185, 260, 332
Bsu15I ATCGAT 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 135
BtsCI GGATG 2 cut(s) 118, 256
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 86, 227
ClaI ATCGAT 1 cut(s) 135
CpoI CGGWCCG 1 cut(s) 86
CspI CGGWCCG 1 cut(s) 86
CviAII CATG 1 cut(s) 246
CviJI RGCY 4 cut(s) 236, 372, 380, 417
CviKI_1 RGCY 4 cut(s) 236, 372, 380, 417
DpnI GATC 6 cut(s) 92, 117, 187, 262, 334, 386
DpnII GATC 6 cut(s) 90, 115, 185, 260, 332, 384
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 86, 227
Eco57I CTGAAG 1 cut(s) 252
FaeI CATG 1 cut(s) 249
FaiI YATR 4 cut(s) 108, 221, 247, 284
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 1 cut(s) 245
FokI GGATG 2 cut(s) 125, 263
HapII CCGG 2 cut(s) 84, 94
Hin1II CATG 1 cut(s) 249
HindIII AAGCTT 2 cut(s) 234, 370
HinfI GANTC 2 cut(s) 52, 338
HpaII CCGG 2 cut(s) 84, 94
Hpy188I TCNGA 3 cut(s) 90, 190, 337
Hpy188III TCNNGA 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 158, 304, 370, 406
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 254, 356
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 6 cut(s) 90, 115, 185, 260, 332, 384
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 4 cut(s) 97, 107, 243, 312
LweI GCATC 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 64, 152
MalI GATC 6 cut(s) 92, 117, 187, 262, 334, 386
MboI GATC 6 cut(s) 90, 115, 185, 260, 332, 384
MboII GAAGA 7 cut(s) 34, 37, 164, 170, 197, 319, 342
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 3 cut(s) 185, 260, 332
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 103, 136, 186, 267, 295, 310
MseI TTAA 4 cut(s) 147, 239, 348, 421
MspI CCGG 2 cut(s) 84, 94
MunI CAATTG 1 cut(s) 255
NdeII GATC 6 cut(s) 90, 115, 185, 260, 332, 384
NlaIII CATG 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 1 cut(s) 52
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PshBI ATTAAT 1 cut(s) 348
PspPI GGNCC 2 cut(s) 86, 227
PsuI RGATCY 3 cut(s) 185, 260, 332
Rsr2I CGGWCCG 1 cut(s) 86
RsrII CGGWCCG 1 cut(s) 86
SaqAI TTAA 4 cut(s) 147, 239, 348, 421
Sau3AI GATC 6 cut(s) 90, 115, 185, 260, 332, 384
Sau96I GGNCC 2 cut(s) 86, 227
SchI GAGTC 1 cut(s) 332
SetI ASST 7 cut(s) 154, 169, 232, 238, 315, 367, 374
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 2 cut(s) 86, 227
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 1 cut(s) 255
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 255
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 4 cut(s) 147, 239, 348, 421
Tru9I TTAA 4 cut(s) 147, 239, 348, 421
VpaK11BI GGWCC 2 cut(s) 86, 227
VspI ATTAAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.