FvH4_4g32830

Uncharacterized protein At4g22758-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014102
Physical Location & Seq
Forward (+)
31310158 .. 31312311
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32830.t1

Sequence Viewer

Length: 417 bp
ATGTTGCTATACAAGCAGAAGAAGAGCCAGGCTGCCGCCAAGGGCAACAGGTTCCTGATCAGCATCACTGTGCTGGGCAGTGCCGGCCCGATCCGATTCGTTGTCAACGAGGAGGCTCTTGTGGCTGCGGTTATTGATACCGCCTTGAAATCCTATGCTCGTGAAGGCCGCCTCCCGATTCTCGGCTCTGATCTCAATGAGTTCATGCTCTACTGTCCAACTGCCGGACCTGATGCTCTGAGTCCATGGGACACAATTGGATCGCAAGGATCTCGGAACTTTATGCTATGCAAGAAGCCTCAGCCTGTGAAAATGGTCGACGCTGAGATTCCGGCTGCTACAATTTCTCGCAAGGGGAGTGGGAGCTGGAAGGCATGGATCAACAAGTCCCTCAACCTCAAAATCTCTTCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.96

Weight (kDa)

9.74

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7054 PF23156 15 - 97 5e-30 Domain of unknown function (DUF7054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23150 AT1G70780
fragaria_vesca FvH4_4g32830
malus_domestica MD13G1022300.v1.1 MD16G1023400.v1.1
prunus_persica Prupe.1G329500_v2.0.a1
pyrus_communis pycom13g02080
rosa_chinensis RchiOBHm_Chr4g0441841
rosa_laevigata RLG00000006061
rosa_multiflora Rmu_sc0008316.1_g000006
rosa_roxburghii Rroxscaffold_5G00382670
rosa_rugosa Rorug04G0336600
rosa_samantha Rh4AG388000 Rh4BG401700 Rh4CG416700 Rh4DG395100
rosa_wichuraiana Rw4G033500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 318
AciI CCGC 4 cut(s) 36, 128, 141, 169
AclWI GGATC 4 cut(s) 85, 268, 277, 386
AfiI CCNNNNNNNGG 2 cut(s) 182, 224
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
AlwI GGATC 4 cut(s) 85, 268, 277, 386
AoxI GGCC 2 cut(s) 85, 166
ApeKI GCWGC 3 cut(s) 32, 125, 335
AspS9I GGNCC 2 cut(s) 86, 227
AvaII GGWCC 1 cut(s) 227
BauI CACGAG 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 3 cut(s) 19, 112, 322
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 57
BisI GCNGC 5 cut(s) 33, 36, 126, 169, 336
BlsI GCNGC 5 cut(s) 34, 37, 127, 170, 337
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 86, 227
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 72, 223
Bpu10I CCTNAGC 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 39, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 224
Bse118I RCCGGY 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 39, 245
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 2 cut(s) 182, 224
BseMII CTCAG 3 cut(s) 230, 314, 315
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 19, 112, 322
BseYI CCCAGC 1 cut(s) 73
BshFI GGCC 2 cut(s) 87, 168
BsiSI CCGG 3 cut(s) 84, 225, 332
BslFI GGGAC 2 cut(s) 263, 373
BslI CCNNNNNNNGG 2 cut(s) 182, 224
BsmFI GGGAC 2 cut(s) 263, 373
BsnI GGCC 2 cut(s) 87, 168
Bsp143I GATC 6 cut(s) 57, 90, 190, 260, 269, 378
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 4 cut(s) 36, 128, 141, 169
BspANI GGCC 2 cut(s) 87, 168
BspCNI CTCAG 3 cut(s) 231, 313, 316
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 4 cut(s) 85, 268, 277, 386
BspQI GCTCTTC 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 39, 245
BssMI GATC 6 cut(s) 57, 90, 190, 260, 269, 378
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 2 cut(s) 39, 245
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 70, 215
Bst6I CTCTTC 2 cut(s) 17, 412
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 239, 300, 324
BstDSI CCRYGG 1 cut(s) 245
BstKTI GATC 6 cut(s) 60, 93, 193, 263, 272, 381
BstMBI GATC 6 cut(s) 57, 90, 190, 260, 269, 378
BstMWI GCNNNNNNNGC 3 cut(s) 13, 84, 122
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 19, 112, 322
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 2 cut(s) 87, 168
BtgI CCRYGG 1 cut(s) 245
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 2 cut(s) 66, 85
Cac8I GCNNGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 86, 227
CseI GACGC 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 3 cut(s) 205, 246, 375
DdeI CTNAG 3 cut(s) 239, 300, 324
DpnI GATC 6 cut(s) 59, 92, 192, 262, 271, 380
DpnII GATC 6 cut(s) 57, 90, 190, 260, 269, 378
Eam1104I CTCTTC 2 cut(s) 17, 412
EarI CTCTTC 2 cut(s) 17, 412
Eco130I CCWWGG 2 cut(s) 39, 245
Eco47I GGWCC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 39, 245
ErhI CCWWGG 2 cut(s) 39, 245
FaeI CATG 3 cut(s) 208, 249, 378
FaiI YATR 7 cut(s) 10, 156, 206, 247, 284, 289, 376
FaqI GGGAC 2 cut(s) 263, 373
FatI CATG 3 cut(s) 204, 245, 374
FbaI TGATCA 1 cut(s) 57
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 5 cut(s) 33, 36, 126, 169, 336
Fsp4HI GCNGC 5 cut(s) 33, 36, 126, 169, 336
GluI GCNGC 5 cut(s) 33, 36, 126, 169, 336
GsaI CCCAGC 1 cut(s) 77
HaeIII GGCC 2 cut(s) 87, 168
HapII CCGG 3 cut(s) 84, 225, 332
HgaI GACGC 1 cut(s) 329
Hin1II CATG 3 cut(s) 208, 249, 378
HincII GTYRAC 2 cut(s) 106, 319
HindII GTYRAC 2 cut(s) 106, 319
HinfI GANTC 4 cut(s) 96, 178, 241, 328
HpaII CCGG 3 cut(s) 84, 225, 332
Hpy166II GTNNAC 2 cut(s) 106, 319
Hpy188I TCNGA 4 cut(s) 95, 190, 240, 276
Hpy188III TCNNGA 3 cut(s) 55, 161, 175
Hpy8I GTNNAC 2 cut(s) 106, 319
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 158, 364
HpyCH4III ACNGT 2 cut(s) 70, 215
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 84, 122
HpyF3I CTNAG 3 cut(s) 239, 300, 324
Hsp92II CATG 3 cut(s) 208, 249, 378
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 6 cut(s) 57, 90, 190, 260, 269, 378
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 3 cut(s) 19, 112, 322
LweI GCATC 2 cut(s) 72, 223
MalI GATC 6 cut(s) 59, 92, 192, 262, 271, 380
MboI GATC 6 cut(s) 57, 90, 190, 260, 269, 378
MboII GAAGA 3 cut(s) 31, 34, 399
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 269
MluCI AATT 2 cut(s) 255, 342
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 6 cut(s) 103, 106, 182, 309, 401, 407
MroNI GCCGGC 1 cut(s) 83
MseI TTAA 1 cut(s) 415
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 3 cut(s) 84, 225, 332
MspR9I CCNGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 13, 84, 122
NaeI GCCGGC 1 cut(s) 85
NcoI CCATGG 1 cut(s) 245
NdeII GATC 6 cut(s) 57, 90, 190, 260, 269, 378
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 3 cut(s) 208, 249, 378
NlaIV GGNNCC 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 3 cut(s) 96, 178, 328
PkrI GCNGC 5 cut(s) 34, 37, 127, 170, 337
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 86, 227
PsuI RGATCY 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 68
SalI GTCGAC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 5 cut(s) 33, 36, 126, 169, 336
Sau3AI GATC 6 cut(s) 57, 90, 190, 260, 269, 378
Sau96I GGNCC 2 cut(s) 86, 227
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 29
SetI ASST 4 cut(s) 53, 232, 368, 399
SfaNI GCATC 2 cut(s) 72, 223
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 2 cut(s) 255, 342
SsiI CCGC 4 cut(s) 36, 128, 141, 169
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 2 cut(s) 39, 245
TaaI ACNGT 2 cut(s) 70, 215
TaqI TCGA 1 cut(s) 318
TasI AATT 2 cut(s) 255, 342
TauI GCSGC 2 cut(s) 38, 171
TfiI GAWTC 3 cut(s) 96, 178, 328
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TscAI CASTG 2 cut(s) 73, 85
TseI GCWGC 3 cut(s) 32, 125, 335
TspDTI ATGAA 1 cut(s) 193
TspRI CASTG 2 cut(s) 73, 85
VpaK11BI GGWCC 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.