Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014467

Physical Location & Seq

Genomic Coordinates Forward (+)

8317297 .. 8319491

Gene Structure 2195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGACAAAGCTCCCCAACATGACGACAACACTCAACCATCTATTTGATCTGCCGGGGCAGATTTGCCATGTCCAGTGTGGTTTTTGCACCACTATTTTGCTGGTGAGTGTACCGTTTACAAGCTTGTCAATGGTGGTGACTGTGAGATGTGGGCATTGCACAAGCCTTCTCTCTGTCAATTTGATGAAGGCTTCCTTCATTCCTCTCCATCTCCTTGCTTCTCTCTCCCATCTTGATGAGACCGGGAAAGAGGAGGTTGCAGCTACAGATGGTGTGGAAGAAGAAGCATGGAAGGTGAATCAGGAGAAGGAGAACAGTCCAACGACTTTGGTTTCATCTTCAGACAATGAAGATGAAGATGTGTCTCGTGTTTACCAAGTTGTCAATAAACCACCTGAGAAGCGACAAAGAGCTCCTTCAGCTTACAATTGCTTCATCAAGGAAGAGATCAGGAGGTTAAAGGCTCAGAATCCAAGCATGGCTCACAAGGAAGCTTTCAGCTTAGCTGCCAAAAATTGGGCCCATTTTCCTCCAGCTCACAACAAGAGAGCTGCTTCAGATCAATGTTTTTGTGAGGAAGATAACAATGCGATACTACCATGCAATGTTTTTGAGGACCATGAAGAAAGCAATAATGGGTTCCGAGAGAGAAAGGCTCAGAGGCATTCCATTTGGGGAAAATCTCCATTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

231

Amino Acids

25.96

Weight (kDa)

5.94

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	49 - 100	8.3e-25	YABBY, N-terminal
YABBY	PF04690	146 - 213	5.3e-38	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23420 AT1G23420
fragaria_vesca	FvH4_4g32910
malus_domestica	MD13G1094900.v1.1 MD16G1096000.v1.1
prunus_persica	Prupe.1G250500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441941
rosa_laevigata	RLG00000006055
rosa_multiflora	Rmu_sc0002501.1_g000032 Rmu_sc0011990.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382770
rosa_rugosa	Rorug04G0337000
rosa_samantha	Rh4AG389000 Rh4BG402600 Rh4CG417800 Rh4DG395800
rosa_wichuraiana	Rw4G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	516
AcuI	CTGAAG	3 cut(s)	324, 402, 540
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	516
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	233, 369
AoxI	GGCC	1 cut(s)	519
ApaI	GGGCCC	1 cut(s)	523
ApeKI	GCWGC	3 cut(s)	260, 506, 551
AspS9I	GGNCC	3 cut(s)	519, 520, 616
AsuC2I	CCSGG	2 cut(s)	54, 244
AsuHPI	GGTGA	3 cut(s)	115, 148, 307
AvaII	GGWCC	1 cut(s)	616
BaeGI	GKGCMC	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	415, 523
BauI	CACGAG	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	272, 493, 538
BccI	CCATC	4 cut(s)	45, 216, 237, 263
BcnI	CCSGG	2 cut(s)	54, 244
BcoDI	GTCTC	2 cut(s)	233, 369
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	3 cut(s)	261, 507, 552
BlpI	GCTNAGC	1 cut(s)	502
BlsI	GCNGC	3 cut(s)	262, 508, 553
Bme1390I	CCNGG	2 cut(s)	54, 244
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	3 cut(s)	519, 520, 616
BmiI	GGNNCC	2 cut(s)	521, 641
BmrFI	CCNGG	2 cut(s)	54, 244
BplI	GAGNNNNNCTC	2 cut(s)	640, 672
BpmI	CTGGAG	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	502
BpuMI	CCSGG	2 cut(s)	54, 244
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	2 cut(s)	154, 610
BseDI	CCNNGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMI	GCAATG	2 cut(s)	154, 610
BseMII	CTCAG	3 cut(s)	387, 479, 671
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	3 cut(s)	272, 493, 538
BshFI	GGCC	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	53, 243
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	2 cut(s)	233, 369
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	1 cut(s)	521
Bso31I	GGTCTC	1 cut(s)	233
Bsp120I	GGGCCC	1 cut(s)	519
Bsp1286I	GDGCHC	2 cut(s)	415, 523
Bsp143I	GATC	3 cut(s)	46, 447, 559
Bsp1720I	GCTNAGC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	3 cut(s)	388, 478, 670
BspLI	GGNNCC	2 cut(s)	521, 641
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	154, 610
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	3 cut(s)	46, 447, 559
BssSI	CACGAG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	366
Bst4CI	ACNGT	3 cut(s)	114, 142, 317
Bst6I	CTCTTC	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	396, 465, 502, 657
BstKTI	GATC	3 cut(s)	49, 450, 562
BstMAI	GTCTC	2 cut(s)	233, 369
BstMBI	GATC	3 cut(s)	46, 447, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	52, 242
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	3 cut(s)	272, 493, 538
BsuRI	GGCC	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	519, 520, 616
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	6 cut(s)	19, 68, 288, 478, 600, 620
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	4 cut(s)	396, 465, 502, 657
DpnI	GATC	3 cut(s)	48, 449, 561
DpnII	GATC	3 cut(s)	46, 447, 559
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	413
Eco24I	GRGCYC	2 cut(s)	415, 523
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	413
Eco57I	CTGAAG	3 cut(s)	324, 402, 540
EcoICRI	GAGCTC	1 cut(s)	413
EcoT38I	GRGCYC	2 cut(s)	415, 523
FaeI	CATG	6 cut(s)	22, 71, 291, 481, 603, 623
FaiI	YATR	6 cut(s)	20, 69, 289, 479, 601, 621
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 400, 432
FatI	CATG	6 cut(s)	18, 67, 287, 477, 599, 619
Fnu4HI	GCNGC	3 cut(s)	261, 507, 552
FriOI	GRGCYC	2 cut(s)	415, 523
Fsp4HI	GCNGC	3 cut(s)	261, 507, 552
GluI	GCNGC	3 cut(s)	261, 507, 552
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	2 cut(s)	53, 243
Hin1II	CATG	6 cut(s)	22, 71, 291, 481, 603, 623
HindIII	AAGCTT	2 cut(s)	121, 492
HinfI	GANTC	2 cut(s)	298, 469
HpaII	CCGG	2 cut(s)	53, 243
HphI	GGTGA	3 cut(s)	115, 148, 307
Hpy166II	GTNNAC	3 cut(s)	110, 117, 373
Hpy188I	TCNGA	5 cut(s)	343, 468, 559, 644, 660
Hpy188III	TCNNGA	3 cut(s)	233, 302, 451
Hpy8I	GTNNAC	3 cut(s)	110, 117, 373
HpyAV	CCTTC	6 cut(s)	176, 181, 205, 286, 301, 426
HpyCH4III	ACNGT	3 cut(s)	114, 142, 317
HpyCH4V	TGCA	4 cut(s)	87, 159, 260, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	4 cut(s)	396, 465, 502, 657
Hsp92II	CATG	6 cut(s)	22, 71, 291, 481, 603, 623
Kzo9I	GATC	3 cut(s)	46, 447, 559
LmnI	GCTCC	2 cut(s)	15, 418
LpnPI	CCDG	8 cut(s)	66, 86, 86, 256, 287, 408, 436, 546
Lsp1109I	GCAGC	3 cut(s)	272, 493, 538
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	48, 449, 561
MboI	GATC	3 cut(s)	46, 447, 559
MboII	GAAGA	8 cut(s)	290, 293, 330, 362, 368, 455, 590, 635
MfeI	CAATTG	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	415, 523
MluCI	AATT	3 cut(s)	178, 427, 514
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	8 cut(s)	213, 244, 247, 447, 540, 568, 607, 654
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	2 cut(s)	53, 243
MspR9I	CCNGG	2 cut(s)	54, 244
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	664
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	2 cut(s)	54, 244
NdeII	GATC	3 cut(s)	46, 447, 559
NlaIII	CATG	6 cut(s)	22, 71, 291, 481, 603, 623
NlaIV	GGNNCC	2 cut(s)	521, 641
NmuCI	GTSAC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	2 cut(s)	298, 469
PflMI	CCANNNNNTGG	1 cut(s)	516
PkrI	GCNGC	3 cut(s)	262, 508, 553
Psp124BI	GAGCTC	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	521, 641
PspOMI	GGGCCC	1 cut(s)	519
PspPI	GGNCC	3 cut(s)	519, 520, 616
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	415
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	3 cut(s)	261, 507, 552
Sau3AI	GATC	3 cut(s)	46, 447, 559
Sau96I	GGNCC	3 cut(s)	519, 520, 616
ScrFI	CCNGG	2 cut(s)	54, 244
SduI	GDGCHC	2 cut(s)	415, 523
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	178, 427, 514
SstI	GAGCTC	1 cut(s)	415
StyD4I	CCNGG	2 cut(s)	52, 242
TaaI	ACNGT	3 cut(s)	114, 142, 317
TasI	AATT	3 cut(s)	178, 427, 514
TfiI	GAWTC	2 cut(s)	298, 469
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	260, 506, 551
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	7 cut(s)	187, 200, 324, 363, 369, 424, 636
TspRI	CASTG	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	2 cut(s)	74, 97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.