Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014467

Physical Location & Seq

Genomic Coordinates Forward (+)

6676513 .. 6678229

Gene Structure 1717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1096000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCAACACTGAATCAGCTCTTCGATCTTCCGGATCAGATTTGCTATGTTCAATGTGGCTTCTGCACTACCTTACTACTGGTGAGCATCCCATGCAGCAGCTTGTCAATGTTGGCTGTCACGGTCCGTTGTGGTCATTGCAGTTGCCTCCTATCTGTTAACATGATGAAGGCCTCCTTTGTTCCCCTTCATCTCTTAGCGTCACTTGCCCAAGATGAGCAAAAAGAAGAACTTTGCTTAGAGGAAATGGTGGAGAAACAAAACCCCTTGGACATGCGCAGCCCACCAATGGTGGTTTCTAATTCTGATAATGAAGAGGAGGATACAATCTTCATGAATCCCATTGTTAACAAACCCCCAGAGAAGAGACAACGAGCTCCATCGGCTTACAACCGATTTATCAAGGAAGAAATCAAGAGGCTTAAGGATGAGAATCCAAGCATGACTCATAAGGAAGCTTTCAGTACAGCAGCAAAAAATTGGGCTCAGTTCCCTCCAATTCAGTACAAAGAAGATGGTCCAGATGGAGAGAGTTGCACCAGCCAGAGAGAGGAAAATGTGGCATGGGAATCTGATGTGCCTGAGGCAGTCGAAGATGGCAAAGTTTTCGGTGAGACAAAGGCCCTAAGGCATTCCATATGGGCAAGGACACCCTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

221

Amino Acids

24.89

Weight (kDa)

4.86

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	10 - 63	1.5e-22	YABBY, N-terminal
YABBY	PF04690	103 - 170	2.4e-36	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23420 AT1G23420
fragaria_vesca	FvH4_4g32910
malus_domestica	MD13G1094900.v1.1 MD16G1096000.v1.1
prunus_persica	Prupe.1G250500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441941
rosa_laevigata	RLG00000006055
rosa_multiflora	Rmu_sc0002501.1_g000032 Rmu_sc0011990.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382770
rosa_rugosa	Rorug04G0337000
rosa_samantha	Rh4AG389000 Rh4BG402600 Rh4CG417800 Rh4DG395800
rosa_wichuraiana	Rw4G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	31
AclWI	GGATC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	466, 506
AfiI	CCNNNNNNNGG	2 cut(s)	289, 550
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	53
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AluBI	AGCT	4 cut(s)	19, 102, 377, 458
AluI	AGCT	4 cut(s)	19, 102, 377, 458
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	2 cut(s)	361, 608
AlwI	GGATC	1 cut(s)	42
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	2 cut(s)	171, 621
ApeKI	GCWGC	4 cut(s)	96, 99, 279, 470
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	124, 518, 622
AsuHPI	GGTGA	2 cut(s)	94, 623
AvaII	GGWCC	2 cut(s)	124, 518
AxyI	CCTNAGG	2 cut(s)	582, 626
BanII	GRGCYC	2 cut(s)	379, 487
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	4 cut(s)	108, 111, 291, 482
BccI	CCATC	4 cut(s)	388, 509, 518, 590
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciVI	GTATCC	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	361, 608
BfrI	CTTAAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	4 cut(s)	97, 100, 280, 471
BlsI	GCNGC	4 cut(s)	98, 101, 281, 472
Bme18I	GGWCC	2 cut(s)	124, 518
BmgT120I	GGNCC	3 cut(s)	124, 518, 622
BmsI	GCATC	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 550
Bse1I	ACTGG	1 cut(s)	84
Bse21I	CCTNAGG	2 cut(s)	582, 626
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	87, 433
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	289, 550
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	500, 573
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	108, 111, 291, 482
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	173, 623
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	2 cut(s)	289, 550
BsmAI	GTCTC	2 cut(s)	361, 608
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	173, 623
Bsp1286I	GDGCHC	2 cut(s)	379, 487
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	25, 34
BspANI	GGCC	2 cut(s)	173, 623
BspCNI	CTCAG	2 cut(s)	499, 574
BspEI	TCCGGA	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	333
BspPI	GGATC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	25, 34
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	3 cut(s)	26, 309, 359
BstAFI	CTTAAG	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstDEI	CTNAG	5 cut(s)	196, 238, 486, 582, 626
BstF5I	GGATG	2 cut(s)	87, 433
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	2 cut(s)	28, 37
BstMAI	GTCTC	2 cut(s)	361, 608
BstMBI	GATC	2 cut(s)	25, 34
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 206, 383
BstNSI	RCATGY	1 cut(s)	277
BstV1I	GCAGC	4 cut(s)	108, 111, 291, 482
Bsu36I	CCTNAGG	2 cut(s)	582, 626
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	173, 623
BtsCI	GGATG	2 cut(s)	87, 433
BtsIMutI	CAGTG	1 cut(s)	8
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	124, 518, 622
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	465, 505
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	6 cut(s)	93, 163, 274, 334, 442, 564
CviQI	GTAC	2 cut(s)	465, 505
DdeI	CTNAG	5 cut(s)	196, 238, 486, 582, 626
DpnI	GATC	2 cut(s)	27, 36
DpnII	GATC	2 cut(s)	25, 34
Eam1104I	CTCTTC	3 cut(s)	26, 309, 359
EarI	CTCTTC	3 cut(s)	26, 309, 359
Ecl136II	GAGCTC	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	173
Eco24I	GRGCYC	2 cut(s)	379, 487
Eco47I	GGWCC	2 cut(s)	124, 518
Eco53kI	GAGCTC	1 cut(s)	377
Eco81I	CCTNAGG	2 cut(s)	582, 626
EcoICRI	GAGCTC	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	379, 487
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	6 cut(s)	96, 166, 277, 337, 445, 567
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 216, 248
FatI	CATG	6 cut(s)	92, 162, 273, 333, 441, 563
FauNDI	CATATG	1 cut(s)	638
Fnu4HI	GCNGC	4 cut(s)	97, 100, 280, 471
FokI	GGATG	2 cut(s)	74, 440
FriOI	GRGCYC	2 cut(s)	379, 487
Fsp4HI	GCNGC	4 cut(s)	97, 100, 280, 471
FspI	TGCGCA	1 cut(s)	278
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	4 cut(s)	97, 100, 280, 471
HaeIII	GGCC	2 cut(s)	173, 623
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	6 cut(s)	96, 166, 277, 337, 445, 567
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	3 cut(s)	6, 160, 349
HindII	GTYRAC	3 cut(s)	6, 160, 349
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	5 cut(s)	13, 337, 433, 445, 569
HpaI	GTTAAC	2 cut(s)	160, 349
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	94, 623
Hpy166II	GTNNAC	3 cut(s)	6, 160, 349
Hpy188I	TCNGA	3 cut(s)	39, 307, 574
Hpy188III	TCNNGA	4 cut(s)	32, 334, 415, 521
Hpy8I	GTNNAC	3 cut(s)	6, 160, 349
HpyAV	CCTTC	2 cut(s)	163, 197
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	66, 96, 141, 537
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 206, 383
HpyF3I	CTNAG	5 cut(s)	196, 238, 486, 582, 626
Hsp92II	CATG	6 cut(s)	96, 166, 277, 337, 445, 567
HspAI	GCGC	1 cut(s)	277
Kpn2I	TCCGGA	1 cut(s)	31
KspAI	GTTAAC	2 cut(s)	160, 349
Kzo9I	GATC	2 cut(s)	25, 34
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	7 cut(s)	45, 65, 372, 534, 553, 557, 594
Lsp1109I	GCAGC	4 cut(s)	108, 111, 291, 482
LweI	GCATC	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	118, 201
MalI	GATC	2 cut(s)	27, 36
MboI	GATC	2 cut(s)	25, 34
MboII	GAAGA	9 cut(s)	13, 20, 239, 322, 326, 376, 419, 524, 605
MhlI	GDGCHC	2 cut(s)	379, 487
MluCI	AATT	3 cut(s)	301, 478, 498
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	9 cut(s)	158, 184, 235, 310, 313, 411, 504, 544, 577
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	3 cut(s)	159, 348, 423
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	631
MwoI	GCNNNNNNNGC	3 cut(s)	93, 206, 383
NdeI	CATATG	1 cut(s)	638
NdeII	GATC	2 cut(s)	25, 34
NlaIII	CATG	6 cut(s)	96, 166, 277, 337, 445, 567
NmuCI	GTSAC	2 cut(s)	118, 201
NsbI	TGCGCA	1 cut(s)	278
NspI	RCATGY	1 cut(s)	277
PagI	TCATGA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	4 cut(s)	13, 337, 433, 569
PkrI	GCNGC	4 cut(s)	98, 101, 281, 472
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp124BI	GAGCTC	1 cut(s)	379
PspPI	GGNCC	3 cut(s)	124, 518, 622
RsaI	GTAC	2 cut(s)	466, 506
RsaNI	GTAC	2 cut(s)	465, 505
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	379
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	159, 348, 423
SatI	GCNGC	4 cut(s)	97, 100, 280, 471
Sau3AI	GATC	2 cut(s)	25, 34
Sau96I	GGNCC	3 cut(s)	124, 518, 622
SchI	GAGTC	1 cut(s)	439
SduI	GDGCHC	2 cut(s)	379, 487
SetI	ASST	5 cut(s)	21, 74, 104, 379, 460
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	2 cut(s)	124, 518
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	301, 478, 498
SseBI	AGGCCT	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	379
StuI	AGGCCT	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	24, 591, 657
TasI	AATT	3 cut(s)	301, 478, 498
TatI	WGTACW	2 cut(s)	464, 504
TfiI	GAWTC	4 cut(s)	13, 337, 433, 569
Tru1I	TTAA	3 cut(s)	159, 348, 423
Tru9I	TTAA	3 cut(s)	159, 348, 423
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	2 cut(s)	118, 201
TseI	GCWGC	4 cut(s)	96, 99, 279, 470
Tsp45I	GTSAC	2 cut(s)	118, 201
TspDTI	ATGAA	5 cut(s)	179, 182, 322, 327, 350
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	15
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	124, 518
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.