Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014467

Physical Location & Seq

Genomic Coordinates Reverse (-)

26248367 .. 26249994

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G250500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCTGCACTGAACCATCTCTTCGATCTCCCCGATCAGATTTGCTATGTCCAATGTGGTTTCTGCGCCACCATATTACTGGTAAGTGTCCCATGCAGCAGCTTGTCAATGTTGGCCGTCACGGTCAGATGTGGTCACTGCAGTTGCCTCCTATCTGTCAACATGATGAAGGCCTCCTTTGTTCCCCTCCATCTGTTAGCTTCCCTTACCCAAGATGAGCAAAGAGAAGAACTCTGCTTAGAAGAAGTGGACAAACAGAACAACAACCCCCTGGACATGCGCAGCCCATCCATGGTGATTTCCAATTCTGACAATGAAGAGGAGGACACAATCTCTATGAATCCCATTGTTAACAAGCCACCAGAGAAGAGACAACGTGCTCCGTCGGCCTACAACCATTTTATCAAAGAAGAGATCAGGAGGCTTAAAGCTGAGAATCCAAGCATGACTCACAAGGAAGCTTTCAGCACAGCTGCAAAAAATTGGGCCCAGTTCCCTCCAATTCAGTACAAAGGAGATGGTCCTGATGGAGAGAGCTGCACTAGCCAGAGAGAGGAAAATGTGACTTGGGATTCTGATGTTCCTGAGGCCCATGAAGATGGCAAAGTTTACCGTGAGAGAAAGGCCCCAAGGCATTCCATATGGGCAAGGACACCCTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

222

Amino Acids

25.01

Weight (kDa)

5.31

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23420 AT1G23420
fragaria_vesca	FvH4_4g32910
malus_domestica	MD13G1094900.v1.1 MD16G1096000.v1.1
prunus_persica	Prupe.1G250500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441941
rosa_laevigata	RLG00000006055
rosa_multiflora	Rmu_sc0002501.1_g000032 Rmu_sc0011990.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382770
rosa_rugosa	Rorug04G0337000
rosa_samantha	Rh4AG389000 Rh4BG402600 Rh4CG417800 Rh4DG395800
rosa_wichuraiana	Rw4G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	292, 553
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	6 cut(s)	102, 200, 431, 461, 473, 537
AluI	AGCT	6 cut(s)	102, 200, 431, 461, 473, 537
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	364
AoxI	GGCC	6 cut(s)	114, 171, 387, 486, 588, 624
ApaI	GGGCCC	1 cut(s)	490
ApeKI	GCWGC	5 cut(s)	96, 99, 282, 473, 537
AspLEI	GCGC	2 cut(s)	68, 282
AspS9I	GGNCC	5 cut(s)	486, 487, 521, 589, 625
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	521
AxyI	CCTNAGG	1 cut(s)	585
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	5 cut(s)	108, 111, 294, 460, 524
BccI	CCATC	6 cut(s)	24, 198, 295, 512, 521, 593
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	139
BisI	GCNGC	5 cut(s)	97, 100, 283, 474, 538
BlsI	GCNGC	5 cut(s)	98, 101, 284, 475, 539
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	5 cut(s)	486, 487, 521, 589, 625
BmiI	GGNNCC	2 cut(s)	488, 627
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	484
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BsaJI	CCNNGG	3 cut(s)	270, 291, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 553
Bse1I	ACTGG	2 cut(s)	84, 490
Bse21I	CCTNAGG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	270, 291, 629
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	292, 553
BseMII	CTCAG	2 cut(s)	423, 576
BseNI	ACTGG	2 cut(s)	84, 490
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	5 cut(s)	108, 111, 294, 460, 524
BsgI	GTGCAG	1 cut(s)	523
BshFI	GGCC	6 cut(s)	116, 173, 389, 488, 590, 626
BsiHKAI	GWGCWC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	292, 553
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	6 cut(s)	116, 173, 389, 488, 590, 626
Bsp120I	GGGCCC	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	382, 490
Bsp143I	GATC	3 cut(s)	25, 34, 414
Bsp19I	CCATGG	1 cut(s)	291
BspANI	GGCC	6 cut(s)	116, 173, 389, 488, 590, 626
BspCNI	CTCAG	2 cut(s)	424, 577
BspLI	GGNNCC	2 cut(s)	488, 627
BspMAI	CTGCAG	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	84, 490
BssECI	CCNNGG	3 cut(s)	270, 291, 629
BssMI	GATC	3 cut(s)	25, 34, 414
BssT1I	CCWWGG	2 cut(s)	291, 629
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	124, 614
Bst6I	CTCTTC	4 cut(s)	26, 312, 362, 405
BstDEI	CTNAG	3 cut(s)	238, 432, 585
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	68, 282
BstKTI	GATC	3 cut(s)	28, 37, 417
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	25, 34, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 543
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	5 cut(s)	108, 111, 294, 460, 524
BstXI	CCANNNNNNTGG	2 cut(s)	79, 599
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	6 cut(s)	116, 173, 389, 488, 590, 626
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	8, 136
CfoI	GCGC	2 cut(s)	68, 282
Cfr13I	GGNCC	5 cut(s)	486, 487, 521, 589, 625
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	6 cut(s)	93, 163, 277, 292, 445, 593
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	238, 432, 585
DpnI	GATC	3 cut(s)	27, 36, 416
DpnII	GATC	3 cut(s)	25, 34, 414
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	4 cut(s)	26, 312, 362, 405
EarI	CTCTTC	4 cut(s)	26, 312, 362, 405
Eco130I	CCWWGG	2 cut(s)	291, 629
Eco147I	AGGCCT	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	585
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	291, 629
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	2 cut(s)	291, 629
FaeI	CATG	6 cut(s)	96, 166, 280, 295, 448, 596
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	6 cut(s)	92, 162, 276, 291, 444, 592
FauNDI	CATATG	1 cut(s)	641
Fnu4HI	GCNGC	5 cut(s)	97, 100, 283, 474, 538
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	5 cut(s)	97, 100, 283, 474, 538
FspBI	CTAG	1 cut(s)	543
FspI	TGCGCA	1 cut(s)	281
GlaI	GCGC	2 cut(s)	67, 281
GluI	GCNGC	5 cut(s)	97, 100, 283, 474, 538
HaeIII	GGCC	6 cut(s)	116, 173, 389, 488, 590, 626
HhaI	GCGC	2 cut(s)	68, 282
Hin1II	CATG	6 cut(s)	96, 166, 280, 295, 448, 596
Hin6I	GCGC	2 cut(s)	66, 280
HinP1I	GCGC	2 cut(s)	66, 280
HincII	GTYRAC	2 cut(s)	160, 352
HindII	GTYRAC	2 cut(s)	160, 352
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	4 cut(s)	340, 436, 448, 572
HpaI	GTTAAC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	4 cut(s)	160, 250, 352, 610
Hpy188I	TCNGA	4 cut(s)	39, 128, 310, 577
Hpy188III	TCNNGA	3 cut(s)	418, 524, 584
Hpy8I	GTNNAC	4 cut(s)	160, 250, 352, 610
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	124, 614
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	5 cut(s)	8, 96, 141, 476, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 543
HpyF3I	CTNAG	3 cut(s)	238, 432, 585
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	6 cut(s)	96, 166, 280, 295, 448, 596
HspAI	GCGC	2 cut(s)	66, 280
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	25, 34, 414
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	65, 257, 284, 375, 403, 503, 537, 560, 597
Lsp1109I	GCAGC	5 cut(s)	108, 111, 294, 460, 524
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	3 cut(s)	118, 134, 562
MalI	GATC	3 cut(s)	27, 36, 416
MboI	GATC	3 cut(s)	25, 34, 414
MboII	GAAGA	7 cut(s)	13, 239, 254, 329, 379, 422, 608
MhlI	GDGCHC	2 cut(s)	382, 490
MluCI	AATT	3 cut(s)	304, 481, 501
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	9 cut(s)	158, 184, 197, 313, 316, 414, 507, 547, 580
MseI	TTAA	2 cut(s)	351, 426
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	386, 543
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	641
NdeII	GATC	3 cut(s)	25, 34, 414
NlaIII	CATG	6 cut(s)	96, 166, 280, 295, 448, 596
NlaIV	GGNNCC	2 cut(s)	488, 627
NmuCI	GTSAC	3 cut(s)	118, 134, 562
NsbI	TGCGCA	1 cut(s)	281
NspI	RCATGY	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	3 cut(s)	340, 436, 572
PkrI	GCNGC	5 cut(s)	98, 101, 284, 475, 539
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	488, 627
PspOMI	GGGCCC	1 cut(s)	486
PspPI	GGNCC	5 cut(s)	486, 487, 521, 589, 625
PstI	CTGCAG	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	351, 426
SatI	GCNGC	5 cut(s)	97, 100, 283, 474, 538
Sau3AI	GATC	3 cut(s)	25, 34, 414
Sau96I	GGNCC	5 cut(s)	486, 487, 521, 589, 625
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	382, 490
SetI	ASST	7 cut(s)	104, 202, 379, 433, 463, 475, 539
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	3 cut(s)	304, 481, 501
SseBI	AGGCCT	1 cut(s)	173
SspMI	CTAG	1 cut(s)	543
StuI	AGGCCT	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	291, 629
TaaI	ACNGT	2 cut(s)	124, 614
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	2 cut(s)	24, 660
TasI	AATT	3 cut(s)	304, 481, 501
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	3 cut(s)	340, 436, 572
Tru1I	TTAA	2 cut(s)	351, 426
Tru9I	TTAA	2 cut(s)	351, 426
TscAI	CASTG	2 cut(s)	15, 143
TseFI	GTSAC	3 cut(s)	118, 134, 562
TseI	GCWGC	5 cut(s)	96, 99, 282, 473, 537
Tsp45I	GTSAC	3 cut(s)	118, 134, 562
TspDTI	ATGAA	4 cut(s)	182, 330, 353, 609
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	15, 143
VpaK11BI	GGWCC	1 cut(s)	521
XceI	RCATGY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.