Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014467

Physical Location & Seq

Genomic Coordinates Forward (+)

60721608 .. 60723262

Gene Structure 1655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACGACGGTGAACCATCTCTTTGATCTCCCTGAGCAGATTTGCTATGTCCAGTGTGGTTTCTGCGCCACCATATTACTGGTGAGCGTGCCATGCAGCAGTTTGTCAAGATTGGTCACAGTCAGATGTGGTCACTGCAGTTGCCTCCTATCAGTCAACATGTTAAAAGCTTCCTTTCTCCCTTTTCATCTCTTAGCTTCACTTGGCCAAGACGTCGATCAGGAAAAAGATCAAGAAATCTGTGTGGAGGAAGTGGAGTATCCCGGGTTGGGCGATATGCGCAGCCCATCCATGGCGGTTTCTAATAATTCTGAAAATGAAGAGTACACAAACATCACACTGAATCACATTGTTAACAAACCTCCAGAGAAGAGACAACGAGCTCCATCCGCTTATAACCGTTTTATCAAAGAAGAGATCCAGAGGCTTAAAGCTGAAAATCCAAGCATGACTCACAAGGAAGCCTTCAGTACAGCTGCAAAGAATTGGGCACAGTTCCCTCCAGTTCAGTACAAAATAGATGGTCCAGATCATGGAGAAAGCTCTAGCCAGTTGGCTAGAGAGGATCGAAATGTTACATGGAACTCTGATGTCACTGATCAGGTTCAGGAAGATGGCGGAGTTTTTCGTGAGAGAAAAGCCCCAAGGCAGTCCATATGGACAAGGACACCAAGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

226

Amino Acids

25.52

Weight (kDa)

5.44

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	10 - 62	3.5e-25	YABBY, N-terminal
YABBY	PF04690	107 - 172	1.5e-36	YABBY protein, C-terminal
Ccdc124	PF06244	116 - 166	5.3e-06	Coiled-coil domain-containing protein 124 /Oxs1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23420 AT1G23420
fragaria_vesca	FvH4_4g32910
malus_domestica	MD13G1094900.v1.1 MD16G1096000.v1.1
prunus_persica	Prupe.1G250500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441941
rosa_laevigata	RLG00000006055
rosa_multiflora	Rmu_sc0002501.1_g000032 Rmu_sc0011990.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382770
rosa_rugosa	Rorug04G0337000
rosa_samantha	Rh4AG389000 Rh4BG402600 Rh4CG417800 Rh4DG395800
rosa_wichuraiana	Rw4G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AatII	GACGTC	1 cut(s)	216
Acc16I	TGCGCA	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	533
AciI	CCGC	3 cut(s)	296, 390, 618
AclWI	GGATC	2 cut(s)	412, 573
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	3 cut(s)	326, 472, 512
AfiI	CCNNNNNNNGG	3 cut(s)	269, 292, 533
AflIII	ACRYGT	1 cut(s)	159
AluBI	AGCT	6 cut(s)	170, 197, 383, 434, 476, 543
AluI	AGCT	6 cut(s)	170, 197, 383, 434, 476, 543
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	2 cut(s)	412, 573
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	96, 282, 476
AspLEI	GCGC	2 cut(s)	68, 282
AspS9I	GGNCC	1 cut(s)	524
AsuC2I	CCSGG	2 cut(s)	264, 265
AsuHPI	GGTGA	2 cut(s)	22, 94
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	3 cut(s)	108, 294, 463
BccI	CCATC	5 cut(s)	24, 295, 394, 515, 608
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	2 cut(s)	264, 265
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	546, 558
BfmI	CTRYAG	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	3 cut(s)	97, 283, 477
BlsI	GCNGC	3 cut(s)	98, 284, 478
Bme1390I	CCNGG	2 cut(s)	264, 265
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	524
BmrFI	CCNGG	2 cut(s)	264, 265
BpmI	CTGGAG	2 cut(s)	348, 486
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	264, 265
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	263, 291, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 292, 533
Bse1I	ACTGG	4 cut(s)	52, 84, 503, 550
BseDI	CCNNGG	3 cut(s)	263, 291, 644
BseGI	GGATG	2 cut(s)	287, 386
BseLI	CCNNNNNNNGG	3 cut(s)	269, 292, 533
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	4 cut(s)	52, 84, 503, 550
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	3 cut(s)	108, 294, 463
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	3 cut(s)	269, 292, 533
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	385, 493
Bsp143I	GATC	7 cut(s)	25, 217, 229, 417, 529, 565, 598
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	3 cut(s)	296, 390, 618
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	2 cut(s)	412, 573
BsrI	ACTGG	4 cut(s)	52, 84, 503, 550
BssECI	CCNNGG	3 cut(s)	263, 291, 644
BssMI	GATC	7 cut(s)	25, 217, 229, 417, 529, 565, 598
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	291, 644
Bst4CI	ACNGT	4 cut(s)	10, 121, 401, 495
Bst6I	CTCTTC	3 cut(s)	315, 365, 408
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	33, 193
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	287, 386
BstHHI	GCGC	2 cut(s)	68, 282
BstKTI	GATC	7 cut(s)	28, 220, 232, 420, 532, 568, 601
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	7 cut(s)	25, 217, 229, 417, 529, 565, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 279, 389
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	262, 263
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	3 cut(s)	108, 294, 463
BstX2I	RGATCY	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	417
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	287, 386
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	4 cut(s)	59, 133, 338, 594
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	2 cut(s)	68, 282
Cfr13I	GGNCC	1 cut(s)	524
Cfr9I	CCCGGG	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	325, 471, 511
CviAII	CATG	6 cut(s)	93, 160, 292, 448, 533, 579
CviQI	GTAC	3 cut(s)	325, 471, 511
DdeI	CTNAG	2 cut(s)	33, 193
DpnI	GATC	7 cut(s)	27, 219, 231, 419, 531, 567, 600
DpnII	GATC	7 cut(s)	25, 217, 229, 417, 529, 565, 598
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	3 cut(s)	315, 365, 408
EarI	CTCTTC	3 cut(s)	315, 365, 408
EciI	GGCGGA	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	291, 644
Eco24I	GRGCYC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	451
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	291, 644
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	2 cut(s)	291, 644
FaeI	CATG	6 cut(s)	96, 163, 295, 451, 536, 582
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	6 cut(s)	92, 159, 291, 447, 532, 578
FauNDI	CATATG	1 cut(s)	656
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	97, 283, 477
FokI	GGATG	2 cut(s)	274, 373
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	3 cut(s)	97, 283, 477
FspBI	CTAG	2 cut(s)	546, 558
FspI	TGCGCA	1 cut(s)	281
GlaI	GCGC	2 cut(s)	67, 281
GluI	GCNGC	3 cut(s)	97, 283, 477
GsuI	CTGGAG	2 cut(s)	348, 486
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	2 cut(s)	68, 282
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	96, 163, 295, 451, 536, 582
Hin6I	GCGC	2 cut(s)	66, 280
HinP1I	GCGC	2 cut(s)	66, 280
HincII	GTYRAC	2 cut(s)	157, 355
HindII	GTYRAC	2 cut(s)	157, 355
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	2 cut(s)	343, 451
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	22, 94
Hpy166II	GTNNAC	4 cut(s)	13, 157, 327, 355
Hpy188I	TCNGA	3 cut(s)	125, 313, 589
Hpy188III	TCNNGA	8 cut(s)	108, 221, 233, 365, 421, 527, 608, 629
Hpy8I	GTNNAC	4 cut(s)	13, 157, 327, 355
Hpy99I	CGWCG	2 cut(s)	10, 218
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	4 cut(s)	10, 121, 401, 495
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	96, 138, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 279, 389
HpyF3I	CTNAG	2 cut(s)	33, 193
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	6 cut(s)	96, 163, 295, 451, 536, 582
HspAI	GCGC	2 cut(s)	66, 280
Ksp22I	TGATCA	1 cut(s)	598
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	7 cut(s)	25, 217, 229, 417, 529, 565, 598
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	3 cut(s)	108, 294, 463
MaeI	CTAG	2 cut(s)	546, 558
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	4 cut(s)	115, 131, 574, 592
MalI	GATC	7 cut(s)	27, 219, 231, 419, 531, 567, 600
MboI	GATC	7 cut(s)	25, 217, 229, 417, 529, 565, 598
MboII	GAAGA	4 cut(s)	332, 382, 425, 623
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	385, 493
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	2 cut(s)	307, 484
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	6 cut(s)	155, 241, 372, 417, 510, 556
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	3 cut(s)	164, 354, 429
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	264, 265
MwoI	GCNNNNNNNGC	3 cut(s)	93, 279, 389
NciI	CCSGG	2 cut(s)	264, 265
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	656
NdeII	GATC	7 cut(s)	25, 217, 229, 417, 529, 565, 598
NlaIII	CATG	6 cut(s)	96, 163, 295, 451, 536, 582
NmuCI	GTSAC	3 cut(s)	115, 131, 592
NsbI	TGCGCA	1 cut(s)	281
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	98, 284, 478
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	417
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	3 cut(s)	326, 472, 512
RsaNI	GTAC	3 cut(s)	325, 471, 511
SacI	GAGCTC	1 cut(s)	385
SaqAI	TTAA	3 cut(s)	164, 354, 429
SatI	GCNGC	3 cut(s)	97, 283, 477
Sau3AI	GATC	7 cut(s)	25, 217, 229, 417, 529, 565, 598
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	264, 265
SduI	GDGCHC	2 cut(s)	385, 493
SetI	ASST	9 cut(s)	172, 199, 216, 364, 385, 436, 478, 545, 606
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	524
SmaI	CCCGGG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	307, 484
SsiI	CCGC	3 cut(s)	296, 390, 618
SspMI	CTAG	2 cut(s)	546, 558
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	262, 263
StyI	CCWWGG	2 cut(s)	291, 644
TaaI	ACNGT	4 cut(s)	10, 121, 401, 495
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	216, 568
TasI	AATT	2 cut(s)	307, 484
TatI	WGTACW	3 cut(s)	324, 470, 510
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	3 cut(s)	164, 354, 429
Tru9I	TTAA	3 cut(s)	164, 354, 429
TscAI	CASTG	4 cut(s)	59, 140, 345, 601
TseFI	GTSAC	3 cut(s)	115, 131, 592
TseI	GCWGC	3 cut(s)	96, 282, 476
Tsp45I	GTSAC	3 cut(s)	115, 131, 592
TspDTI	ATGAA	2 cut(s)	176, 333
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	4 cut(s)	59, 140, 345, 601
Van91I	CCANNNNNTGG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	524
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmaI	CCCGGG	1 cut(s)	263
XspI	CTAG	2 cut(s)	546, 558
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.