Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014467

Physical Location & Seq

Genomic Coordinates Forward (+)

63686198 .. 63688213

Gene Structure 2016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACGACGCTGAACGGTCTCTTTGATCTCCCTGAGCAGATTTGCTATGTCCAGTGTGGTTTCTGCGCCACCATATTACTGGTTATACTCAATATTATTGCTCGACTACTTCTTTACATATTATTTGCATTACAACCGGTTCTTGTGGTGAGTGTGCCATGCAGCAGTTTGTCAAGATTGGTCACAGTCAGATGTGGTCACTGCAGTTGCCTCCTATCAGTCAACATGTTAAAAGCTTCCTTTCTCCCTTTTCATCTCTTAGCTTCACTTGGCCAGAACGTCGATCAGGAAAAAGATCAAGAAATCTGTGTGGAAGAAGTGGAGGAAGTGAAGTATCCCGGGTTGGGCGATATGCGCAGCCCATCCATGGCGGTTTCTAATAATTCTGAAAATGAAGAGTACACAAACATCACACTGAATCACATTGTTAACAAACCTCCAGAGAAGAGACAACGAGCTCCATCCGCTTATAACCGTTTTATCAAAGAAGAGATCCAGAGGCTTAAAGCTGAAAATCCAAGCATGACTCACAAGGAAGCCTTCAGTACAGCTGCAAAGAATGTAGGTGTTCCTTTTAGTTTACTCAATCATTTAACTATTTTGATTAGTAAACATAGGAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

208

Amino Acids

23.26

Weight (kDa)

6.99

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	10 - 28	5.1e-07	YABBY, N-terminal
YABBY_N	PF24868	47 - 84	5.2e-14	YABBY, N-terminal
YABBY	PF04690	132 - 187	4.7e-31	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23420 AT1G23420
fragaria_vesca	FvH4_4g32910
malus_domestica	MD13G1094900.v1.1 MD16G1096000.v1.1
prunus_persica	Prupe.1G250500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441941
rosa_laevigata	RLG00000006055
rosa_multiflora	Rmu_sc0002501.1_g000032 Rmu_sc0011990.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382770
rosa_rugosa	Rorug04G0337000
rosa_samantha	Rh4AG389000 Rh4BG402600 Rh4CG417800 Rh4DG395800
rosa_wichuraiana	Rw4G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
Acc16I	TGCGCA	1 cut(s)	356
AciI	CCGC	2 cut(s)	371, 465
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	526
AfaI	GTAC	2 cut(s)	401, 547
AfiI	CCNNNNNNNGG	2 cut(s)	344, 367
AflIII	ACRYGT	1 cut(s)	225
AgeI	ACCGGT	1 cut(s)	136
AluBI	AGCT	6 cut(s)	236, 263, 458, 509, 551, 624
AluI	AGCT	6 cut(s)	236, 263, 458, 509, 551, 624
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	23, 442
AlwI	GGATC	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	162, 357, 551
AsiGI	ACCGGT	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	68, 357
AsuC2I	CCSGG	2 cut(s)	339, 340
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	460
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	3 cut(s)	174, 369, 538
BccI	CCATC	2 cut(s)	370, 469
BciVI	GTATCC	1 cut(s)	345
BcnI	CCSGG	2 cut(s)	339, 340
BcoDI	GTCTC	2 cut(s)	23, 442
BfmI	CTRYAG	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	3 cut(s)	163, 358, 552
BlsI	GCNGC	3 cut(s)	164, 359, 553
Bme1390I	CCNGG	2 cut(s)	339, 340
BmeT110I	CYCGRG	1 cut(s)	338
BmrFI	CCNGG	2 cut(s)	339, 340
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	339, 340
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	338, 366
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 367
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	52, 84
BseDI	CCNNGG	2 cut(s)	338, 366
BseGI	GGATG	2 cut(s)	362, 461
BseLI	CCNNNNNNNGG	2 cut(s)	344, 367
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	52, 84
BseXI	GCAGC	3 cut(s)	174, 369, 538
BshFI	GGCC	1 cut(s)	273
BshTI	ACCGGT	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	137, 339
BslI	CCNNNNNNNGG	2 cut(s)	344, 367
BsmAI	GTCTC	2 cut(s)	23, 442
BsnI	GGCC	1 cut(s)	273
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	25, 283, 295, 492
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	2 cut(s)	371, 465
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	52, 84
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	338, 366
BssMI	GATC	4 cut(s)	25, 283, 295, 492
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	3 cut(s)	17, 187, 476
Bst6I	CTCTTC	3 cut(s)	390, 440, 483
BstDEI	CTNAG	2 cut(s)	33, 259
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	362, 461
BstHHI	GCGC	2 cut(s)	68, 357
BstKTI	GATC	4 cut(s)	28, 286, 298, 495
BstMAI	GTCTC	2 cut(s)	23, 442
BstMBI	GATC	4 cut(s)	25, 283, 295, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 464
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	337, 338
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	174, 369, 538
BstX2I	RGATCY	1 cut(s)	492
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	492
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	362, 461
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	59, 199, 413
CfoI	GCGC	2 cut(s)	68, 357
Cfr10I	RCCGGY	1 cut(s)	136
Cfr9I	CCCGGG	1 cut(s)	338
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	400, 546
CspAI	ACCGGT	1 cut(s)	136
CviAII	CATG	4 cut(s)	159, 226, 367, 523
CviQI	GTAC	2 cut(s)	400, 546
DdeI	CTNAG	2 cut(s)	33, 259
DpnI	GATC	4 cut(s)	27, 285, 297, 494
DpnII	GATC	4 cut(s)	25, 283, 295, 492
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	390, 440, 483
EarI	CTCTTC	3 cut(s)	390, 440, 483
Ecl136II	GAGCTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	4 cut(s)	162, 229, 370, 526
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FatI	CATG	4 cut(s)	158, 225, 366, 522
Fnu4HI	GCNGC	3 cut(s)	163, 358, 552
FokI	GGATG	2 cut(s)	349, 448
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	163, 358, 552
FspI	TGCGCA	1 cut(s)	356
GlaI	GCGC	2 cut(s)	67, 356
GluI	GCNGC	3 cut(s)	163, 358, 552
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	2 cut(s)	137, 339
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	68, 357
Hin1II	CATG	4 cut(s)	162, 229, 370, 526
Hin6I	GCGC	2 cut(s)	66, 355
HinP1I	GCGC	2 cut(s)	66, 355
HincII	GTYRAC	2 cut(s)	223, 430
HindII	GTYRAC	2 cut(s)	223, 430
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	418, 526
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	137, 339
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	5 cut(s)	223, 402, 430, 581, 611
Hpy188I	TCNGA	2 cut(s)	191, 388
Hpy188III	TCNNGA	5 cut(s)	174, 287, 299, 440, 496
Hpy8I	GTNNAC	5 cut(s)	223, 402, 430, 581, 611
Hpy99I	CGWCG	2 cut(s)	10, 284
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	3 cut(s)	17, 187, 476
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	128, 162, 204, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 464
HpyF3I	CTNAG	2 cut(s)	33, 259
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	162, 229, 370, 526
HspAI	GCGC	2 cut(s)	66, 355
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	25, 283, 295, 492
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	9 cut(s)	45, 65, 65, 150, 272, 287, 352, 453, 509
Lsp1109I	GCAGC	3 cut(s)	174, 369, 538
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	181, 197
MalI	GATC	4 cut(s)	27, 285, 297, 494
MboI	GATC	4 cut(s)	25, 283, 295, 492
MboII	GAAGA	4 cut(s)	326, 407, 457, 500
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	1 cut(s)	382
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	520
MnlI	CCTC	4 cut(s)	221, 316, 447, 492
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	4 cut(s)	230, 429, 504, 593
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	551, 624
MspI	CCGG	2 cut(s)	137, 339
MspR9I	CCNGG	2 cut(s)	339, 340
MwoI	GCNNNNNNNGC	2 cut(s)	354, 464
NciI	CCSGG	2 cut(s)	339, 340
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	4 cut(s)	25, 283, 295, 492
NlaIII	CATG	4 cut(s)	162, 229, 370, 526
NmuCI	GTSAC	2 cut(s)	181, 197
NsbI	TGCGCA	1 cut(s)	356
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	418
PinAI	ACCGGT	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	164, 359, 553
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PscI	ACATGT	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	460
PstI	CTGCAG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	492
PvuII	CAGCTG	2 cut(s)	551, 624
RsaI	GTAC	2 cut(s)	401, 547
RsaNI	GTAC	2 cut(s)	400, 546
SacI	GAGCTC	1 cut(s)	460
SaqAI	TTAA	4 cut(s)	230, 429, 504, 593
SatI	GCNGC	3 cut(s)	163, 358, 552
Sau3AI	GATC	4 cut(s)	25, 283, 295, 492
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	339, 340
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	9 cut(s)	238, 265, 282, 439, 460, 511, 553, 568, 626
SfcI	CTRYAG	1 cut(s)	202
SmaI	CCCGGG	1 cut(s)	340
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	2 cut(s)	371, 465
SspI	AATATT	1 cut(s)	94
SstI	GAGCTC	1 cut(s)	460
StyD4I	CCNGG	2 cut(s)	337, 338
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	3 cut(s)	17, 187, 476
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	103, 282
TasI	AATT	1 cut(s)	382
TatI	WGTACW	2 cut(s)	399, 545
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	4 cut(s)	230, 429, 504, 593
Tru9I	TTAA	4 cut(s)	230, 429, 504, 593
TscAI	CASTG	3 cut(s)	59, 206, 420
TseFI	GTSAC	2 cut(s)	181, 197
TseI	GCWGC	3 cut(s)	162, 357, 551
Tsp45I	GTSAC	2 cut(s)	181, 197
TspDTI	ATGAA	2 cut(s)	242, 408
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	3 cut(s)	59, 206, 420
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmaI	CCCGGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.