Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014467

Physical Location & Seq

Genomic Coordinates Forward (+)

6670838 .. 6672827

Gene Structure 1990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1094900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGATGATTGTCCTCCAGCTTCTATATAAATCCTCCCGTTTTATAACCAGACACTTACTTTTGTTCACCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAAAACACACAAACATGTCAACACTGAATCATCTCTACGATCTTCCAGACCAGATTTGCTATGTCCAGTGTGGCTTCTGCACTACCATACTCCTGGTGAGCGTCCCATGCAGCAGCTTGTCTATGTTGGCCGTCACTGTCCGATGTGGTCACTGCAGTTGCCTCCTATCAGTGAACATGATGAAGGCCTCCTTTGTTCCCCTTCATCTCTTAGCTTCACTTACCCAAGATGAGCAAAAAGAAGAACTTTGCTTGGAGGAAATGGTGGAGAAGCAAAACTCCTTGGACATGCGCAGCCCATCAATGGTGATTTCCAATTCTGACAATGAAGATGAGGATATGATCTCCATGAATCCCATTGTTAACAAACCCCCGGAGAAGAGACAACGAGCTCCATCGGCTTACAACCGATTTATCAAGGAAGAAATCAGGAGGCTTAAGGCTGAGAATCCAAGCATGACTCACAAGGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCACAGTTCCCTCCAATTCAGTACAAAGAAGATGGTCCAGATGGAGAGAGTTGCACCTGCAGCGAGCTGAGGGAGGAAAATGTGGCATGGGAATCTGATATGCCTGAGGCAGTCCAAGATGGCAATGGTTTCCGCGAGAGAAAGGCCCCAAGGCATTCCATATGGGCAAGGACACCCTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

263

Amino Acids

29.82

Weight (kDa)

5.86

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	50 - 103	2e-23	YABBY, N-terminal
YABBY	PF04690	143 - 210	6.2e-38	YABBY protein, C-terminal
Ccdc124	PF06244	153 - 204	7.8e-06	Coiled-coil domain-containing protein 124 /Oxs1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23420 AT1G23420
fragaria_vesca	FvH4_4g32910
malus_domestica	MD13G1094900.v1.1 MD16G1096000.v1.1
prunus_persica	Prupe.1G250500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441941
rosa_laevigata	RLG00000006055
rosa_multiflora	Rmu_sc0002501.1_g000032 Rmu_sc0011990.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382770
rosa_rugosa	Rorug04G0337000
rosa_samantha	Rh4AG389000 Rh4BG402600 Rh4CG417800 Rh4DG395800
rosa_wichuraiana	Rw4G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AarI	CACCTGC	1 cut(s)	668
Acc16I	TGCGCA	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	668
AccII	CGCG	1 cut(s)	738
AciI	CCGC	1 cut(s)	736
AcoI	YGGCCR	1 cut(s)	234
AfaI	GTAC	2 cut(s)	586, 626
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	120
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	7 cut(s)	19, 222, 320, 497, 578, 590, 670
AluI	AGCT	7 cut(s)	19, 222, 320, 497, 578, 590, 670
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	1 cut(s)	481
AoxI	GGCC	3 cut(s)	234, 291, 747
ApeKI	GCWGC	5 cut(s)	216, 219, 399, 590, 663
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	638, 748
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	58, 214, 424
AvaII	GGWCC	1 cut(s)	638
AxyI	CCTNAGG	1 cut(s)	708
BaeGI	GKGCMC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	671
BbvI	GCAGC	5 cut(s)	228, 231, 411, 577, 675
BccI	CCATC	5 cut(s)	412, 508, 629, 638, 716
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	2 cut(s)	259, 661
BfrI	CTTAAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	668
BisI	GCNGC	5 cut(s)	217, 220, 400, 591, 664
BlsI	GCNGC	5 cut(s)	218, 221, 401, 592, 665
Bme1390I	CCNGG	2 cut(s)	200, 479
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	638, 748
BmiI	GGNNCC	1 cut(s)	750
BmrFI	CCNGG	2 cut(s)	200, 479
Bpu10I	CCTNAGC	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	387, 477, 752
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	708
Bse3DI	GCAATG	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	387, 477, 752
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	540, 662, 699
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	5 cut(s)	228, 231, 411, 577, 675
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	3 cut(s)	236, 293, 749
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	236, 293, 749
Bsp1286I	GDGCHC	2 cut(s)	499, 607
Bsp143I	GATC	2 cut(s)	145, 447
BspACI	CCGC	1 cut(s)	736
BspANI	GGCC	3 cut(s)	236, 293, 749
BspCNI	CTCAG	3 cut(s)	541, 663, 700
BspFNI	CGCG	1 cut(s)	738
BspLI	GGNNCC	1 cut(s)	750
BspMAI	CTGCAG	2 cut(s)	263, 665
BspMI	ACCTGC	1 cut(s)	668
BspTI	CTTAAG	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	733
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	387, 477, 752
BssMI	GATC	2 cut(s)	145, 447
BssT1I	CCWWGG	2 cut(s)	387, 752
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	244, 609
Bst6I	CTCTTC	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	4 cut(s)	316, 549, 671, 708
BstFNI	CGCG	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	2 cut(s)	148, 450
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	2 cut(s)	145, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 503, 663
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	2 cut(s)	124, 397
BstSCI	CCNGG	2 cut(s)	198, 477
BstSFI	CTRYAG	2 cut(s)	259, 661
BstSLI	GKGCMC	1 cut(s)	607
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	5 cut(s)	228, 231, 411, 577, 675
BstXI	CCANNNNNNTGG	1 cut(s)	199
Bsu36I	CCTNAGG	1 cut(s)	708
BsuRI	GGCC	3 cut(s)	236, 293, 749
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	5 cut(s)	128, 179, 240, 256, 282
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	1 cut(s)	668
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	638, 748
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	585, 625
CviAII	CATG	7 cut(s)	121, 213, 283, 394, 454, 562, 690
CviQI	GTAC	2 cut(s)	585, 625
DdeI	CTNAG	4 cut(s)	316, 549, 671, 708
DpnI	GATC	2 cut(s)	147, 449
DpnII	GATC	2 cut(s)	145, 447
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	387, 752
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	497
Eco81I	CCTNAGG	1 cut(s)	708
EcoICRI	GAGCTC	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	387, 752
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	387, 752
FaeI	CATG	7 cut(s)	124, 216, 286, 397, 457, 565, 693
FalI	AAGNNNNNCTT	4 cut(s)	281, 313, 336, 368
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	7 cut(s)	120, 212, 282, 393, 453, 561, 689
FauNDI	CATATG	1 cut(s)	764
Fnu4HI	GCNGC	5 cut(s)	217, 220, 400, 591, 664
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	5 cut(s)	217, 220, 400, 591, 664
FspBI	CTAG	1 cut(s)	105
FspI	TGCGCA	1 cut(s)	398
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	5 cut(s)	217, 220, 400, 591, 664
HaeIII	GGCC	3 cut(s)	236, 293, 749
HapII	CCGG	1 cut(s)	479
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	7 cut(s)	124, 216, 286, 397, 457, 565, 693
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	2 cut(s)	126, 469
HindII	GTYRAC	2 cut(s)	126, 469
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	5 cut(s)	133, 457, 553, 565, 695
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	3 cut(s)	58, 214, 424
Hpy166II	GTNNAC	4 cut(s)	66, 126, 280, 469
Hpy188I	TCNGA	3 cut(s)	248, 427, 700
Hpy188III	TCNNGA	4 cut(s)	105, 152, 535, 641
Hpy8I	GTNNAC	4 cut(s)	66, 126, 280, 469
HpyAV	CCTTC	2 cut(s)	283, 317
HpyCH4III	ACNGT	2 cut(s)	244, 609
HpyCH4V	TGCA	6 cut(s)	186, 216, 261, 593, 657, 663
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 503, 663
HpyF3I	CTNAG	4 cut(s)	316, 549, 671, 708
Hsp92II	CATG	7 cut(s)	124, 216, 286, 397, 457, 565, 693
HspAI	GCGC	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	145, 447
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	5 cut(s)	228, 231, 411, 577, 675
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	238, 254
MalI	GATC	2 cut(s)	147, 449
MboI	GATC	2 cut(s)	145, 447
MboII	GAAGA	6 cut(s)	140, 359, 446, 496, 539, 644
MhlI	GDGCHC	2 cut(s)	499, 607
MluCI	AATT	3 cut(s)	421, 598, 618
MlyI	GAGTC	1 cut(s)	559
MseI	TTAA	2 cut(s)	468, 543
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	590
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	200, 479
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	3 cut(s)	213, 503, 663
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	764
NdeII	GATC	2 cut(s)	145, 447
NlaIII	CATG	7 cut(s)	124, 216, 286, 397, 457, 565, 693
NlaIV	GGNNCC	1 cut(s)	750
NmuCI	GTSAC	2 cut(s)	238, 254
NsbI	TGCGCA	1 cut(s)	398
NspI	RCATGY	2 cut(s)	124, 397
PaqCI	CACCTGC	1 cut(s)	668
PceI	AGGCCT	1 cut(s)	293
PciI	ACATGT	1 cut(s)	120
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	4 cut(s)	133, 457, 553, 695
PkrI	GCNGC	5 cut(s)	218, 221, 401, 592, 665
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PscI	ACATGT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	2 cut(s)	638, 748
PstI	CTGCAG	2 cut(s)	263, 665
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	2 cut(s)	586, 626
RsaNI	GTAC	2 cut(s)	585, 625
RseI	CAYNNNNRTG	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	468, 543
SatI	GCNGC	5 cut(s)	217, 220, 400, 591, 664
Sau3AI	GATC	2 cut(s)	145, 447
Sau96I	GGNCC	2 cut(s)	638, 748
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	200, 479
SduI	GDGCHC	2 cut(s)	499, 607
SetI	ASST	9 cut(s)	21, 71, 224, 322, 499, 580, 592, 662, 672
SfcI	CTRYAG	2 cut(s)	259, 661
SinI	GGWCC	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	3 cut(s)	421, 598, 618
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	736
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	499
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	198, 477
StyI	CCWWGG	2 cut(s)	387, 752
TaaI	ACNGT	2 cut(s)	244, 609
TaqI	TCGA	1 cut(s)	783
TasI	AATT	3 cut(s)	421, 598, 618
TatI	WGTACW	2 cut(s)	584, 624
TfiI	GAWTC	4 cut(s)	133, 457, 553, 695
Tru1I	TTAA	2 cut(s)	468, 543
Tru9I	TTAA	2 cut(s)	468, 543
TscAI	CASTG	5 cut(s)	135, 179, 247, 263, 282
TseFI	GTSAC	2 cut(s)	238, 254
TseI	GCWGC	5 cut(s)	216, 219, 399, 590, 663
Tsp45I	GTSAC	2 cut(s)	238, 254
TspDTI	ATGAA	4 cut(s)	299, 302, 447, 470
TspRI	CASTG	5 cut(s)	135, 179, 247, 263, 282
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	638
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	2 cut(s)	124, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	725
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.