Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002501.1

Orthogroup ID

OG0014467

Physical Location & Seq

Genomic Coordinates Reverse (-)

143878 .. 145233

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002501.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgaatgtaggtgagtgtgccatgcagcagtttgtcaagattggtcacagtcagatgtggtcactgcagttgcctcctatcagtcaacatgaaaaagatcaagaaatctgtgtggaagaagtggaggaagtgaagtatcccgggttgggcgatatgcgcagcccatccatggcggtttctaataattctgaaaatgaagagtacacaaacatcacactgaatcacattgttaacaaacctccagagaagagacaacgagctccatccgcttataaccgttttatcaaagaagagatccagaggcttaaagctgaaaatccaagcatgactcacaaggaagccttcagtacagctgcaaagaattgggcacagttccctccagttcagtacaaaatagatgctccagatcatggagaaagctctagccagttggctagagaggatcgaaatgttacgtggaactctgatgtcactgatcaggttcaggaagatggcggagtttttcgtgagagaaaagccccaaggcagtccatatgggcaaggacaccaatcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

185

Amino Acids

21.22

Weight (kDa)

5.47

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23420 AT1G23420
fragaria_vesca	FvH4_4g32910
malus_domestica	MD13G1094900.v1.1 MD16G1096000.v1.1
prunus_persica	Prupe.1G250500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441941
rosa_laevigata	RLG00000006055
rosa_multiflora	Rmu_sc0002501.1_g000032 Rmu_sc0011990.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382770
rosa_rugosa	Rorug04G0337000
rosa_samantha	Rh4AG389000 Rh4BG402600 Rh4CG417800 Rh4DG395800
rosa_wichuraiana	Rw4G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
Acc16I	TGCGCA	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	410
AciI	CCGC	3 cut(s)	173, 267, 495
AclWI	GGATC	2 cut(s)	289, 450
AcuI	CTGAAG	1 cut(s)	328
AfaI	GTAC	3 cut(s)	203, 349, 389
AfiI	CCNNNNNNNGG	3 cut(s)	146, 169, 410
AluBI	AGCT	4 cut(s)	260, 311, 353, 420
AluI	AGCT	4 cut(s)	260, 311, 353, 420
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	289, 450
Ama87I	CYCGRG	1 cut(s)	140
ApeKI	GCWGC	3 cut(s)	25, 159, 353
AspLEI	GCGC	1 cut(s)	159
AsuC2I	CCSGG	2 cut(s)	141, 142
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	37, 171, 340
BccI	CCATC	3 cut(s)	172, 271, 485
BciVI	GTATCC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	141, 142
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	423, 435
BfmI	CTRYAG	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	147
BisI	GCNGC	3 cut(s)	26, 160, 354
BlsI	GCNGC	3 cut(s)	27, 161, 355
Bme1390I	CCNGG	2 cut(s)	141, 142
BmeT110I	CYCGRG	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	141, 142
BmsI	GCATC	1 cut(s)	388
BpmI	CTGGAG	3 cut(s)	225, 363, 387
BpuMI	CCSGG	2 cut(s)	141, 142
BsaAI	YACGTR	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	140, 168, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 169, 410
Bse1I	ACTGG	2 cut(s)	380, 427
BseDI	CCNNGG	3 cut(s)	140, 168, 521
BseGI	GGATG	2 cut(s)	164, 263
BseLI	CCNNNNNNNGG	3 cut(s)	146, 169, 410
BseNI	ACTGG	2 cut(s)	380, 427
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	3 cut(s)	37, 171, 340
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	146, 169, 410
BsmAI	GTCTC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	262, 370
Bsp143I	GATC	5 cut(s)	97, 294, 406, 442, 475
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	3 cut(s)	173, 267, 495
BspMAI	CTGCAG	1 cut(s)	69
BspPI	GGATC	2 cut(s)	289, 450
BsrI	ACTGG	2 cut(s)	380, 427
BssECI	CCNNGG	3 cut(s)	140, 168, 521
BssMI	GATC	5 cut(s)	97, 294, 406, 442, 475
BssT1I	CCWWGG	2 cut(s)	168, 521
Bst4CI	ACNGT	3 cut(s)	50, 278, 372
Bst6I	CTCTTC	3 cut(s)	192, 242, 285
BstBAI	YACGTR	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	164, 263
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	5 cut(s)	100, 297, 409, 445, 478
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	5 cut(s)	97, 294, 406, 442, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 266
BstSCI	CCNGG	2 cut(s)	139, 140
BstSFI	CTRYAG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	37, 171, 340
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	164, 263
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	3 cut(s)	62, 215, 471
CfoI	GCGC	1 cut(s)	159
Cfr9I	CCCGGG	1 cut(s)	140
Csp6I	GTAC	3 cut(s)	202, 348, 388
CviAII	CATG	5 cut(s)	22, 89, 169, 325, 410
CviQI	GTAC	3 cut(s)	202, 348, 388
DpnI	GATC	5 cut(s)	99, 296, 408, 444, 477
DpnII	GATC	5 cut(s)	97, 294, 406, 442, 475
Eam1104I	CTCTTC	3 cut(s)	192, 242, 285
EarI	CTCTTC	3 cut(s)	192, 242, 285
EciI	GGCGGA	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	168, 521
Eco24I	GRGCYC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	168, 521
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	168, 521
FaeI	CATG	5 cut(s)	25, 92, 172, 328, 413
FaiI	YATR	9 cut(s)	23, 90, 155, 170, 273, 326, 411, 533, 535
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	5 cut(s)	21, 88, 168, 324, 409
FauNDI	CATATG	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	26, 160, 354
FokI	GGATG	2 cut(s)	151, 250
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	26, 160, 354
FspBI	CTAG	2 cut(s)	423, 435
FspI	TGCGCA	1 cut(s)	158
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	3 cut(s)	26, 160, 354
GsuI	CTGGAG	3 cut(s)	225, 363, 387
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	5 cut(s)	25, 92, 172, 328, 413
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	2 cut(s)	86, 232
HindII	GTYRAC	2 cut(s)	86, 232
HinfI	GANTC	2 cut(s)	220, 328
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	86, 204, 232
Hpy188I	TCNGA	3 cut(s)	54, 190, 466
Hpy188III	TCNNGA	7 cut(s)	37, 101, 242, 298, 404, 485, 506
Hpy8I	GTNNAC	3 cut(s)	86, 204, 232
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	3 cut(s)	50, 278, 372
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	3 cut(s)	25, 67, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 266
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	5 cut(s)	25, 92, 172, 328, 413
HspAI	GCGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	475
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	97, 294, 406, 442, 475
LmnI	GCTCC	2 cut(s)	265, 406
LpnPI	CCDG	8 cut(s)	154, 255, 311, 393, 417, 440, 464, 470
Lsp1109I	GCAGC	3 cut(s)	37, 171, 340
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	423, 435
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	4 cut(s)	44, 60, 451, 469
MalI	GATC	5 cut(s)	99, 296, 408, 444, 477
MboI	GATC	5 cut(s)	97, 294, 406, 442, 475
MboII	GAAGA	5 cut(s)	128, 209, 259, 302, 500
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	262, 370
MluCI	AATT	2 cut(s)	184, 361
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	6 cut(s)	84, 118, 249, 294, 387, 433
MseI	TTAA	2 cut(s)	231, 306
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	141, 142
MwoI	GCNNNNNNNGC	2 cut(s)	156, 266
NciI	CCSGG	2 cut(s)	141, 142
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	5 cut(s)	97, 294, 406, 442, 475
NlaIII	CATG	5 cut(s)	25, 92, 172, 328, 413
NmuCI	GTSAC	3 cut(s)	44, 60, 469
NsbI	TGCGCA	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	3 cut(s)	27, 161, 355
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	456
PsiI	TTATAA	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	3 cut(s)	203, 349, 389
RsaNI	GTAC	3 cut(s)	202, 348, 388
SacI	GAGCTC	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	231, 306
SatI	GCNGC	3 cut(s)	26, 160, 354
Sau3AI	GATC	5 cut(s)	97, 294, 406, 442, 475
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	141, 142
SduI	GDGCHC	2 cut(s)	262, 370
SetI	ASST	8 cut(s)	13, 241, 262, 313, 355, 422, 458, 483
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	65
SmaI	CCCGGG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	184, 361
SsiI	CCGC	3 cut(s)	173, 267, 495
SspMI	CTAG	2 cut(s)	423, 435
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	139, 140
StyI	CCWWGG	2 cut(s)	168, 521
TaaI	ACNGT	3 cut(s)	50, 278, 372
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	445, 552
TasI	AATT	2 cut(s)	184, 361
TatI	WGTACW	3 cut(s)	201, 347, 387
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	231, 306
Tru9I	TTAA	2 cut(s)	231, 306
TscAI	CASTG	3 cut(s)	69, 222, 478
TseFI	GTSAC	3 cut(s)	44, 60, 469
TseI	GCWGC	3 cut(s)	25, 159, 353
Tsp45I	GTSAC	3 cut(s)	44, 60, 469
TspDTI	ATGAA	3 cut(s)	17, 105, 210
TspMI	CCCGGG	1 cut(s)	140
TspRI	CASTG	3 cut(s)	69, 222, 478
Van91I	CCANNNNNTGG	1 cut(s)	410
XmaI	CCCGGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	423, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.