Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014467

Physical Location & Seq

Genomic Coordinates Forward (+)

31343311 .. 31345497

Gene Structure 2187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCGACGCTGAACCATCTCTTTGATCTCCCTGCTGAGCAGATTTGCTATGTCCAATGTGGTTTCTGCGCCACCCTATTACTGGTGAGTGTGCCATGCAGCAGTTTGTCAAGATTGGTCACAGTCAGATGTGGTCACTGCAGTTGCCTCCTATCAGTCAACATGATAAAAGCTTCCTTTCTCCCTTTTCATCATCTCCTAGCTTCACTTGGCCAAGACGACGTCGATCAGGGTTCGCAGGAAAAAGATCGAGAAATCTGTGAGGAAGAAATGGAGAAAGTGAAGTATCCGGGGTTGGGTGATATGCGCAGCCAATCCATGGTGGTTTCTAATAATTATGAAAATGAAGAGGATTACACAAACACATTCTCACTGAATCACATTGTTAACAAACCTCCAGAGAAGAGACAACGAGCTCCATCCGCTTATAACCGTTTTATCAAAGAAGAGATCCAGAGGCTTAAATCTGAAAATCCAAGCATGACTCACAAAGAAGCCTTCAGCACAGCTGCAAAGAATTGGGCTCAGTTCCCTCCAGTTCAGTACAAAATAGATGGCCCAGATCATGGAGAGAGCTCTAGCCAACTGATCAGAGAGGATCAAAATGTTACATGGAACTCTGATGTCACTGATCAGGTTCAGGAAGATGGCAGAGATTTTCGTGAGAGAAAAGCCCCAAGGCATTCCATTTGGGCAAGGACACCGTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

238

Amino Acids

27.12

Weight (kDa)

5.53

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	11 - 65	2e-24	YABBY, N-terminal
YABBY	PF04690	123 - 183	1e-35	YABBY protein, C-terminal
Ccdc124	PF06244	126 - 177	5.2e-06	Coiled-coil domain-containing protein 124 /Oxs1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23420 AT1G23420
fragaria_vesca	FvH4_4g32910
malus_domestica	MD13G1094900.v1.1 MD16G1096000.v1.1
prunus_persica	Prupe.1G250500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441941
rosa_laevigata	RLG00000006055
rosa_multiflora	Rmu_sc0002501.1_g000032 Rmu_sc0011990.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382770
rosa_rugosa	Rorug04G0337000
rosa_samantha	Rh4AG389000 Rh4BG402600 Rh4CG417800 Rh4DG395800
rosa_wichuraiana	Rw4G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AatII	GACGTC	1 cut(s)	225
Acc16I	TGCGCA	1 cut(s)	308
AccB7I	CCANNNNNTGG	2 cut(s)	319, 566
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	2 cut(s)	445, 606
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	4 cut(s)	82, 296, 319, 566
AluBI	AGCT	5 cut(s)	173, 203, 416, 509, 576
AluI	AGCT	5 cut(s)	173, 203, 416, 509, 576
Alw21I	GWGCWC	2 cut(s)	418, 578
Alw26I	GTCTC	1 cut(s)	400
AlwI	GGATC	2 cut(s)	445, 606
AoxI	GGCC	2 cut(s)	211, 556
ApeKI	GCWGC	3 cut(s)	99, 309, 509
AspLEI	GCGC	2 cut(s)	71, 309
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	97, 311
BalI	TGGCCA	1 cut(s)	213
BanII	GRGCYC	3 cut(s)	418, 526, 578
Bbv12I	GWGCWC	2 cut(s)	418, 578
BbvI	GCAGC	3 cut(s)	111, 321, 496
BccI	CCATC	4 cut(s)	24, 427, 548, 641
BciVI	GTATCC	1 cut(s)	297
BclI	TGATCA	2 cut(s)	588, 631
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	2 cut(s)	200, 579
BfmI	CTRYAG	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	3 cut(s)	100, 310, 510
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	3 cut(s)	101, 311, 511
Bme1390I	CCNGG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	381, 519
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	290, 318, 677
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 296, 319, 566
Bse1I	ACTGG	2 cut(s)	87, 536
BseDI	CCNNGG	3 cut(s)	290, 318, 677
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	4 cut(s)	82, 296, 319, 566
BseMII	CTCAG	2 cut(s)	27, 539
BseNI	ACTGG	2 cut(s)	87, 536
BseXI	GCAGC	3 cut(s)	111, 321, 496
BshFI	GGCC	2 cut(s)	213, 558
BsiHKAI	GWGCWC	2 cut(s)	418, 578
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	4 cut(s)	82, 296, 319, 566
BsmAI	GTCTC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	2 cut(s)	213, 558
Bsp1286I	GDGCHC	3 cut(s)	418, 526, 578
Bsp143I	GATC	8 cut(s)	25, 226, 247, 450, 562, 588, 598, 631
Bsp1720I	GCTNAGC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	2 cut(s)	213, 558
BspCNI	CTCAG	2 cut(s)	28, 538
BspMAI	CTGCAG	1 cut(s)	143
BspPI	GGATC	2 cut(s)	445, 606
BsrI	ACTGG	2 cut(s)	87, 536
BssECI	CCNNGG	3 cut(s)	290, 318, 677
BssMI	GATC	8 cut(s)	25, 226, 247, 450, 562, 588, 598, 631
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	318, 677
Bst4CI	ACNGT	3 cut(s)	124, 434, 705
Bst6I	CTCTTC	3 cut(s)	342, 398, 441
BstACI	GRCGYC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	36, 525
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	419
BstHHI	GCGC	2 cut(s)	71, 309
BstKTI	GATC	8 cut(s)	28, 229, 250, 453, 565, 591, 601, 634
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	8 cut(s)	25, 226, 247, 450, 562, 588, 598, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	111, 321, 496
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	213, 558
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	419
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	3 cut(s)	136, 371, 627
CfoI	GCGC	2 cut(s)	71, 309
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	6 cut(s)	96, 163, 319, 481, 566, 612
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	2 cut(s)	36, 525
DpnI	GATC	8 cut(s)	27, 228, 249, 452, 564, 590, 600, 633
DpnII	GATC	8 cut(s)	25, 226, 247, 450, 562, 588, 598, 631
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	3 cut(s)	342, 398, 441
EarI	CTCTTC	3 cut(s)	342, 398, 441
Ecl136II	GAGCTC	2 cut(s)	416, 576
Eco130I	CCWWGG	2 cut(s)	318, 677
Eco24I	GRGCYC	3 cut(s)	418, 526, 578
Eco53kI	GAGCTC	2 cut(s)	416, 576
Eco57I	CTGAAG	1 cut(s)	484
EcoICRI	GAGCTC	2 cut(s)	416, 576
EcoT14I	CCWWGG	2 cut(s)	318, 677
EcoT38I	GRGCYC	3 cut(s)	418, 526, 578
ErhI	CCWWGG	2 cut(s)	318, 677
FaeI	CATG	6 cut(s)	99, 166, 322, 484, 569, 615
FatI	CATG	6 cut(s)	95, 162, 318, 480, 565, 611
FbaI	TGATCA	2 cut(s)	588, 631
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	100, 310, 510
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	3 cut(s)	418, 526, 578
Fsp4HI	GCNGC	3 cut(s)	100, 310, 510
FspBI	CTAG	2 cut(s)	200, 579
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	2 cut(s)	70, 308
GluI	GCNGC	3 cut(s)	100, 310, 510
GsuI	CTGGAG	2 cut(s)	381, 519
HaeIII	GGCC	2 cut(s)	213, 558
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	71, 309
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	6 cut(s)	99, 166, 322, 484, 569, 615
Hin6I	GCGC	2 cut(s)	69, 307
HinP1I	GCGC	2 cut(s)	69, 307
HincII	GTYRAC	3 cut(s)	6, 160, 388
HindII	GTYRAC	3 cut(s)	6, 160, 388
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	2 cut(s)	376, 484
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	97, 311
Hpy166II	GTNNAC	3 cut(s)	6, 160, 388
Hpy188I	TCNGA	4 cut(s)	128, 469, 593, 622
Hpy188III	TCNNGA	6 cut(s)	111, 251, 398, 454, 641, 662
Hpy8I	GTNNAC	3 cut(s)	6, 160, 388
Hpy99I	CGWCG	3 cut(s)	10, 224, 227
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	3 cut(s)	124, 434, 705
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	99, 141, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	36, 525
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	6 cut(s)	99, 166, 322, 484, 569, 615
HspAI	GCGC	2 cut(s)	69, 307
Ksp22I	TGATCA	2 cut(s)	588, 631
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	8 cut(s)	25, 226, 247, 450, 562, 588, 598, 631
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	3 cut(s)	111, 321, 496
MaeI	CTAG	2 cut(s)	200, 579
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	4 cut(s)	118, 134, 607, 625
MalI	GATC	8 cut(s)	27, 228, 249, 452, 564, 590, 600, 633
MboI	GATC	8 cut(s)	25, 226, 247, 450, 562, 588, 598, 631
MboII	GAAGA	5 cut(s)	278, 359, 415, 458, 656
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	3 cut(s)	418, 526, 578
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	2 cut(s)	334, 517
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	478
MnlI	CCTC	7 cut(s)	158, 256, 343, 405, 450, 543, 589
Mox20I	TGGCCA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	2 cut(s)	387, 462
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	682
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	8 cut(s)	25, 226, 247, 450, 562, 588, 598, 631
NlaIII	CATG	6 cut(s)	99, 166, 322, 484, 569, 615
NmuCI	GTSAC	3 cut(s)	118, 134, 625
NsbI	TGCGCA	1 cut(s)	308
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	2 cut(s)	319, 566
PkrI	GCNGC	3 cut(s)	101, 311, 511
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PsiI	TTATAA	1 cut(s)	429
Psp124BI	GAGCTC	2 cut(s)	418, 578
PspPI	GGNCC	1 cut(s)	557
PstI	CTGCAG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	450
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SacI	GAGCTC	2 cut(s)	418, 578
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	387, 462
SatI	GCNGC	3 cut(s)	100, 310, 510
Sau3AI	GATC	8 cut(s)	25, 226, 247, 450, 562, 588, 598, 631
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	3 cut(s)	418, 526, 578
SetI	ASST	8 cut(s)	175, 205, 225, 397, 418, 511, 578, 639
SfcI	CTRYAG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	334, 517
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	2 cut(s)	200, 579
SstI	GAGCTC	2 cut(s)	418, 578
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	318, 677
TaaI	ACNGT	3 cut(s)	124, 434, 705
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	5, 225, 250, 708
TasI	AATT	2 cut(s)	334, 517
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	2 cut(s)	387, 462
Tru9I	TTAA	2 cut(s)	387, 462
TscAI	CASTG	3 cut(s)	143, 378, 634
TseFI	GTSAC	3 cut(s)	118, 134, 625
TseI	GCWGC	3 cut(s)	99, 309, 509
Tsp45I	GTSAC	3 cut(s)	118, 134, 625
TspDTI	ATGAA	3 cut(s)	179, 354, 360
TspRI	CASTG	3 cut(s)	143, 378, 634
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	2 cut(s)	319, 566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	200, 579
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.