AT1G24095

Protein of unknown function, DUF393

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014917
Physical Location & Seq
Forward (+)
8523225 .. 8524929
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24095.1

Sequence Viewer

Length: 642 bp
ATGTTGACGAGAGCGCTTCGGATTTTGAAACCCAGGTTATTTCTGGGAAGTTTGCTACAGCGTCGATCGGTTTGTTTCTCAGCTCCGTCGCCGGCGTTTTCTACCGGAGCTATTTCCCGTACGACGGCTGAGATTGACGCCGATGAAGTTACTGCGTGCTTGGATCCAGCTGAATCGGTGACTAAGATTCCGGTGATAATGCCTGGTAACCTTCAGCCACGTGTCGTCGTGTACGACGGAGTCTGTCATCTTTGCCATGGAGGTGTGAAGTGGATAATCAAAGCTGATAAGTACAGAAAGATAAAGTTCTGTTGTCTTCAGTCTAAAGCAGCTGAGCCTTATCTAGAAGTGAGTGGTGTCACTAGAGAGGATGTTCAGAAACGATTTCTCTTCATTGAAGGTCTCGGCTTTTACCATCAGGCATCAACCGCTGCACTCAGAGTGGTATCATACTTACCTCTGCCTTATTCCGCATTGAACGCGTTCTCCATAGTTCCCACTCCTCTGAGAGACTCGGTGTATGACTATGTGGCGAAGAATCGCTATGACTGGTTTGGAAAAGCTGAGGATTGCTTGGTTCTGAATGACAAAGAGCTGTTGGAGAGGTTTATAGACCGAGATGAACTCATTAATCGAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

213

Amino Acids

23.98

Weight (kDa)

8.64

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 76 - 187 7e-25 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24095 AT1G24095
fragaria_vesca FvH4_4g35000
malus_domestica MD13G1087000.v1.1 MD16G1087300.v1.1
pyrus_communis pycom13g07500 pycom16g07490
rosa_chinensis RchiOBHm_Chr4g0444521
rosa_laevigata RLG00000005827
rosa_multiflora Rmu_co8099458.1_g000001 Rmu_sc0019173.1_g000001
rosa_rugosa Rorug04G0353300.1
rosa_samantha Rh4AG413600 Rh4BG425100 Rh4CG439700 Rh4DG420600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 482
AciI CCGC 2 cut(s) 429, 471
AclWI GGATC 2 cut(s) 158, 171
AcuI CTGAAG 2 cut(s) 197, 302
AcvI CACGTG 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 3 cut(s) 121, 233, 293
AfeI AGCGCT 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 124
AflIII ACRYGT 2 cut(s) 220, 480
AgsI TTSAA 3 cut(s) 28, 398, 478
AjnI CCWGG 2 cut(s) 32, 202
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 8 cut(s) 83, 110, 170, 284, 332, 563, 595, 639
AluI AGCT 8 cut(s) 83, 110, 170, 284, 332, 563, 595, 639
Alw26I GTCTC 2 cut(s) 407, 504
AlwI GGATC 2 cut(s) 158, 171
Aor51HI AGCGCT 1 cut(s) 15
ApeKI GCWGC 2 cut(s) 329, 431
AseI ATTAAT 1 cut(s) 630
Asp700I GAANNNNTTC 1 cut(s) 482
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 190, 205
BamHI GGATCC 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 341, 418
BccI CCATC 1 cut(s) 423
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 2 cut(s) 34, 204
BcoDI GTCTC 2 cut(s) 407, 504
BfaI CTAG 2 cut(s) 344, 363
BfmI CTRYAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 17
BisI GCNGC 2 cut(s) 330, 432
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 2 cut(s) 331, 433
Bme1390I CCNGG 2 cut(s) 34, 204
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 34, 204
BmsI GCATC 1 cut(s) 431
BpiI GAAGAC 1 cut(s) 308
BplI GAGNNNNNCTC 2 cut(s) 609, 641
Bpu10I CCTNAGC 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 2 cut(s) 32, 256
BsaWI WCCGGW 2 cut(s) 104, 190
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 554
BseBI CCWGG 2 cut(s) 34, 204
BseDI CCNNGG 2 cut(s) 32, 256
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 6 cut(s) 93, 120, 324, 451, 497, 555
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 1 cut(s) 492
BseXI GCAGC 2 cut(s) 341, 418
BsgI GTGCAG 1 cut(s) 417
Bsh1236I CGCG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 68
BsiSI CCGG 3 cut(s) 92, 105, 191
BsiWI CGTACG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 407, 504
Bso31I GGTCTC 1 cut(s) 407
Bsp143I GATC 2 cut(s) 65, 163
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 2 cut(s) 429, 471
BspCNI CTCAG 6 cut(s) 92, 121, 325, 450, 498, 556
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 2 cut(s) 158, 171
BspTNI GGTCTC 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 554
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 32, 256
BssMI GATC 2 cut(s) 65, 163
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 34, 204
Bst6I CTCTTC 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 93, 157
BstDEI CTNAG 7 cut(s) 79, 129, 183, 333, 437, 506, 564
BstDSI CCRYGG 1 cut(s) 256
BstEII GGTNACC 1 cut(s) 206
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 482
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 68, 166
BstMAI GTCTC 2 cut(s) 407, 504
BstMBI GATC 2 cut(s) 65, 163
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 428, 479
BstNI CCWGG 2 cut(s) 34, 204
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 32, 202
BstSFI CTRYAG 1 cut(s) 56
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 2 cut(s) 341, 418
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 93, 157
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 91
CseI GACGC 2 cut(s) 50, 146
Csp6I GTAC 3 cut(s) 120, 232, 292
CviAII CATG 1 cut(s) 257
CviQI GTAC 3 cut(s) 120, 232, 292
DdeI CTNAG 7 cut(s) 79, 129, 183, 333, 437, 506, 564
DpnI GATC 2 cut(s) 67, 165
DpnII GATC 2 cut(s) 65, 163
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 407
Eco47III AGCGCT 1 cut(s) 15
Eco57I CTGAAG 2 cut(s) 197, 302
Eco72I CACGTG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 206
EcoRII CCWGG 2 cut(s) 32, 202
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 260
FaiI YATR 7 cut(s) 258, 451, 491, 522, 528, 546, 611
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 330, 432
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 330, 432
FspBI CTAG 2 cut(s) 344, 363
GlaI GCGC 1 cut(s) 15
GluI GCNGC 2 cut(s) 330, 432
HaeII RGCGCY 1 cut(s) 17
HapII CCGG 3 cut(s) 92, 105, 191
HgaI GACGC 2 cut(s) 50, 146
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 173, 187, 240, 512, 538
HpaII CCGG 3 cut(s) 92, 105, 191
HphI GGTGA 2 cut(s) 190, 205
Hpy166II GTNNAC 2 cut(s) 6, 232
Hpy188I TCNGA 5 cut(s) 21, 378, 440, 507, 582
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 2 cut(s) 6, 232
Hpy99I CGWCG 5 cut(s) 66, 91, 127, 230, 239
HpyAV CCTTC 2 cut(s) 221, 392
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 479
HpyF3I CTNAG 7 cut(s) 79, 129, 183, 333, 437, 506, 564
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Kzo9I GATC 2 cut(s) 65, 163
LmnI GCTCC 2 cut(s) 88, 107
Lsp1109I GCAGC 2 cut(s) 341, 418
LweI GCATC 1 cut(s) 431
MaeI CTAG 2 cut(s) 344, 363
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 4 cut(s) 148, 178, 206, 358
MalI GATC 2 cut(s) 67, 165
MboI GATC 2 cut(s) 65, 163
MboII GAAGA 3 cut(s) 308, 382, 547
MflI RGATCY 1 cut(s) 163
MluI ACGCGT 1 cut(s) 480
MlyI GAGTC 2 cut(s) 249, 506
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 6 cut(s) 254, 361, 468, 513, 559, 597
MreI CGCCGGCG 1 cut(s) 91
MroNI GCCGGC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 482
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 3 cut(s) 170, 332, 431
MspI CCGG 3 cut(s) 92, 105, 191
MspR9I CCNGG 2 cut(s) 34, 204
MvaI CCWGG 2 cut(s) 34, 204
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 2 cut(s) 428, 479
NaeI GCCGGC 1 cut(s) 93
NcoI CCATGG 1 cut(s) 256
NdeII GATC 2 cut(s) 65, 163
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 178, 358
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 3 cut(s) 173, 187, 538
Pfl23II CGTACG 1 cut(s) 119
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 331, 433
Ple19I CGATCG 1 cut(s) 68
PleI GAGTC 2 cut(s) 248, 506
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
PpsI GAGTC 2 cut(s) 248, 506
Ppu21I YACGTR 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 630
Psp6I CCWGG 2 cut(s) 32, 202
PspCI CACGTG 1 cut(s) 221
PspEI GGTNACC 1 cut(s) 206
PspGI CCWGG 2 cut(s) 32, 202
PspLI CGTACG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 163
PsyI GACNNNGTC 1 cut(s) 239
PvuI CGATCG 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 170, 332
RsaI GTAC 3 cut(s) 121, 233, 293
RsaNI GTAC 3 cut(s) 120, 232, 292
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 2 cut(s) 330, 432
Sau3AI GATC 2 cut(s) 65, 163
SchI GAGTC 2 cut(s) 249, 506
ScrFI CCNGG 2 cut(s) 34, 204
SfaNI GCATC 1 cut(s) 431
SfcI CTRYAG 1 cut(s) 56
SgrAI CRCCGGYG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 261
SsiI CCGC 2 cut(s) 429, 471
SspMI CTAG 2 cut(s) 344, 363
StyD4I CCNGG 2 cut(s) 32, 202
StyI CCWWGG 1 cut(s) 256
TaiI ACGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 64, 634
TaqII GACCGA 1 cut(s) 630
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 3 cut(s) 173, 187, 538
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TseFI GTSAC 2 cut(s) 178, 358
TseI GCWGC 2 cut(s) 329, 431
Tsp45I GTSAC 2 cut(s) 178, 358
TspDTI ATGAA 3 cut(s) 159, 382, 636
TspGWI ACGGA 2 cut(s) 75, 252
Tth111I GACNNNGTC 1 cut(s) 239
VspI ATTAAT 1 cut(s) 630
XbaI TCTAGA 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 2 cut(s) 344, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.