pycom13g07500

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014917
Physical Location & Seq
Reverse (-)
4975879 .. 4978065
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07500.2

Sequence Viewer

Length: 681 bp
ATGACGGCGGCAAGGCTGATCAGATTGTTGCCGAAACTTACAAAAGCAAGAGCTTCACTTTCTTCTCCATCTCCTTCGTTCAAATGTCTATTTTCTTCCAACTCACCGTCTCCCCGCGACGTCGTTTCGAGCACTGCCGCCAACGTCGTTGATCTGGGCGAAGAAGAAGATGATGACGTGCCCGTCTACAGTAACCCGACTGCTTCCGCGGCGGCGAAGATCGTGCAACCCACTCTCCTTCAGCCAGGCGTCGTGGTGTACGATGGGGTCTGCCATCTCTGCCATGGAGGGGTGAAGTGGGTGATCAAAGCGGACAAGTACAGGAAGATCAAATTCTGTTGCGTTCAATCGGAGACTGCTGAGCCTTACCTGAGATTATGTGGTCTGGATCGAGAGGACGTTCTTCGTCGATTCTTGTTTGTCGAAGGCCCCGGGCTTTACCACCAAGGCTCTACTGCTGCACTGAAAGTTTTGTCGTACTTGCCTCTCCCTTACTCTGCTTTGAGTGCTTTCATGGTGATCCCAACTCCTCTGAGAGAGATGGTTTATGATTATGTTGCCAAGCGGCGGTACGACATCTTTGGCAAGTCTGAAGATTGCTTAGTTTTGCGAGAAAAAGAGTTGTTAGAGCGTTTCATTGATAGGGAAGAGATTATGGATCGATCTCCACCAGATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

227

Amino Acids

25.25

Weight (kDa)

6.82

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24095 AT1G24095
fragaria_vesca FvH4_4g35000
malus_domestica MD13G1087000.v1.1 MD16G1087300.v1.1
pyrus_communis pycom13g07500 pycom16g07490
rosa_chinensis RchiOBHm_Chr4g0444521
rosa_laevigata RLG00000005827
rosa_multiflora Rmu_co8099458.1_g000001 Rmu_sc0019173.1_g000001
rosa_rugosa Rorug04G0353300.1
rosa_samantha Rh4AG413600 Rh4BG425100 Rh4CG439700 Rh4DG420600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 186
AccII CGCG 2 cut(s) 117, 209
AciI CCGC 9 cut(s) 8, 115, 138, 207, 209, 212, 311, 565, 568
AclWI GGATC 3 cut(s) 396, 514, 666
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 2 cut(s) 224, 612
AcyI GRCGYC 2 cut(s) 120, 249
AfaI GTAC 4 cut(s) 260, 320, 479, 572
AfiI CCNNNNNNNGG 2 cut(s) 289, 567
AgsI TTSAA 2 cut(s) 82, 347
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 114, 347
AlwI GGATC 3 cut(s) 396, 514, 666
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 2 cut(s) 432, 433
AsuHPI GGTGA 4 cut(s) 96, 304, 313, 529
AvaI CYCGRG 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 445
BccI CCATC 4 cut(s) 76, 257, 282, 535
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 2 cut(s) 18, 303
BcnI CCSGG 2 cut(s) 432, 433
BcoDI GTCTC 2 cut(s) 114, 347
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 6 cut(s) 9, 138, 210, 213, 459, 566
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 6 cut(s) 10, 139, 211, 214, 460, 567
Bme1390I CCNGG 3 cut(s) 246, 432, 433
BmeT110I CYCGRG 1 cut(s) 431
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 3 cut(s) 246, 432, 433
Bpu1102I GCTNAGC 1 cut(s) 360
BpuMI CCSGG 2 cut(s) 432, 433
Bsa29I ATCGAT 1 cut(s) 661
BsaHI GRCGYC 2 cut(s) 120, 249
BsaJI CCNNGG 5 cut(s) 207, 283, 430, 431, 445
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 567
BseBI CCWGG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 661
BseDI CCNNGG 5 cut(s) 207, 283, 430, 431, 445
BseLI CCNNNNNNNGG 2 cut(s) 289, 567
BseMII CTCAG 3 cut(s) 351, 362, 524
BseRI GAGGAG 1 cut(s) 519
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 444
Bsh1236I CGCG 2 cut(s) 117, 209
BshFI GGCC 1 cut(s) 429
BshVI ATCGAT 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 289, 567
BsmAI GTCTC 2 cut(s) 114, 347
BsmBI CGTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 134, 183
Bsp143I GATC 9 cut(s) 18, 151, 219, 303, 327, 388, 519, 658, 662
Bsp1720I GCTNAGC 1 cut(s) 360
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 9 cut(s) 8, 115, 138, 207, 209, 212, 311, 565, 568
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 3 cut(s) 352, 363, 525
BspDI ATCGAT 1 cut(s) 661
BspFNI CGCG 2 cut(s) 117, 209
BspLI GGNNCC 1 cut(s) 430
BspPI GGATC 3 cut(s) 396, 514, 666
BssECI CCNNGG 5 cut(s) 207, 283, 430, 431, 445
BssMI GATC 9 cut(s) 18, 151, 219, 303, 327, 388, 519, 658, 662
BssNI GRCGYC 2 cut(s) 120, 249
BssT1I CCWWGG 2 cut(s) 283, 445
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 108, 191
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 2 cut(s) 120, 249
BstDEI CTNAG 4 cut(s) 360, 371, 533, 601
BstDSI CCRYGG 2 cut(s) 207, 283
BstFNI CGCG 2 cut(s) 117, 209
BstKTI GATC 9 cut(s) 21, 154, 222, 306, 330, 391, 522, 661, 665
BstMAI GTCTC 2 cut(s) 114, 347
BstMBI GATC 9 cut(s) 18, 151, 219, 303, 327, 388, 519, 658, 662
BstMWI GCNNNNNNNGC 3 cut(s) 209, 279, 506
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 3 cut(s) 244, 430, 431
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 2 cut(s) 117, 209
BstV1I GCAGC 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 661
BsuRI GGCC 1 cut(s) 429
BsuTUI ATCGAT 1 cut(s) 661
BtgI CCRYGG 2 cut(s) 207, 283
BtrI CACGTC 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 461
Cfr13I GGNCC 1 cut(s) 428
Cfr42I CCGCGG 1 cut(s) 210
Cfr9I CCCGGG 1 cut(s) 431
ClaI ATCGAT 1 cut(s) 661
CseI GACGC 1 cut(s) 238
Csp6I GTAC 4 cut(s) 259, 319, 478, 571
CspCI CAANNNNNGTGG 1 cut(s) 657
CviAII CATG 2 cut(s) 284, 514
CviJI RGCY 7 cut(s) 16, 53, 244, 364, 429, 436, 450
CviKI_1 RGCY 7 cut(s) 16, 53, 244, 364, 429, 436, 450
CviQI GTAC 4 cut(s) 259, 319, 478, 571
DdeI CTNAG 4 cut(s) 360, 371, 533, 601
DpnI GATC 9 cut(s) 20, 153, 221, 305, 329, 390, 521, 660, 664
DpnII GATC 9 cut(s) 18, 151, 219, 303, 327, 388, 519, 658, 662
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 2 cut(s) 283, 445
Eco57I CTGAAG 2 cut(s) 224, 612
Eco88I CYCGRG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 283, 445
ErhI CCWWGG 2 cut(s) 283, 445
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 2 cut(s) 287, 517
FaiI YATR 6 cut(s) 285, 379, 515, 549, 555, 656
FatI CATG 2 cut(s) 283, 513
FauI CCCGC 1 cut(s) 122
FbaI TGATCA 2 cut(s) 18, 303
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 6 cut(s) 9, 138, 210, 213, 459, 566
Fsp4HI GCNGC 6 cut(s) 9, 138, 210, 213, 459, 566
GluI GCNGC 6 cut(s) 9, 138, 210, 213, 459, 566
HaeIII GGCC 1 cut(s) 429
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 238
Hin1I GRCGYC 2 cut(s) 120, 249
Hin1II CATG 2 cut(s) 287, 517
HinfI GANTC 1 cut(s) 411
HpaII CCGG 1 cut(s) 432
HphI GGTGA 4 cut(s) 96, 304, 313, 529
Hpy166II GTNNAC 2 cut(s) 187, 259
Hpy188I TCNGA 4 cut(s) 23, 352, 534, 592
Hpy188III TCNNGA 2 cut(s) 386, 392
Hpy8I GTNNAC 2 cut(s) 187, 259
Hpy99I CGWCG 5 cut(s) 122, 125, 149, 254, 411
HpyAV CCTTC 3 cut(s) 84, 248, 419
HpyCH4III ACNGT 2 cut(s) 108, 191
HpyCH4IV ACGT 4 cut(s) 120, 144, 177, 399
HpyCH4V TGCA 2 cut(s) 226, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 279, 506
HpyF3I CTNAG 4 cut(s) 360, 371, 533, 601
HpySE526I ACGT 4 cut(s) 120, 144, 177, 399
Hsp92I GRCGYC 2 cut(s) 120, 249
Hsp92II CATG 2 cut(s) 287, 517
Ksp22I TGATCA 2 cut(s) 18, 303
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 9 cut(s) 18, 151, 219, 303, 327, 388, 519, 658, 662
LpnPI CCDG 7 cut(s) 140, 231, 258, 307, 371, 383, 445
Lsp1109I GCAGC 1 cut(s) 445
MaeII ACGT 4 cut(s) 120, 144, 177, 399
MaeIII GTNAC 1 cut(s) 191
MalI GATC 9 cut(s) 20, 153, 221, 305, 329, 390, 521, 660, 664
MboI GATC 9 cut(s) 18, 151, 219, 303, 327, 388, 519, 658, 662
MhlI GDGCHC 2 cut(s) 134, 183
MluCI AATT 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 4 cut(s) 281, 388, 495, 540
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 3 cut(s) 246, 432, 433
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 2 cut(s) 117, 209
MwoI GCNNNNNNNGC 3 cut(s) 209, 279, 506
NciI CCSGG 2 cut(s) 432, 433
NcoI CCATGG 1 cut(s) 283
NdeII GATC 9 cut(s) 18, 151, 219, 303, 327, 388, 519, 658, 662
NlaIII CATG 2 cut(s) 287, 517
NlaIV GGNNCC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 1 cut(s) 411
PkrI GCNGC 6 cut(s) 10, 139, 211, 214, 460, 567
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 428
RsaI GTAC 4 cut(s) 260, 320, 479, 572
RsaNI GTAC 4 cut(s) 259, 319, 478, 571
SacII CCGCGG 1 cut(s) 210
SatI GCNGC 6 cut(s) 9, 138, 210, 213, 459, 566
Sau3AI GATC 9 cut(s) 18, 151, 219, 303, 327, 388, 519, 658, 662
Sau96I GGNCC 1 cut(s) 428
ScrFI CCNGG 3 cut(s) 246, 432, 433
SduI GDGCHC 2 cut(s) 134, 183
SetI ASST 6 cut(s) 55, 123, 147, 180, 372, 402
SfcI CTRYAG 1 cut(s) 187
Sfr303I CCGCGG 1 cut(s) 210
SgrBI CCGCGG 1 cut(s) 210
SmaI CCCGGG 1 cut(s) 433
Sse9I AATT 1 cut(s) 332
SsiI CCGC 9 cut(s) 8, 115, 138, 207, 209, 212, 311, 565, 568
StyD4I CCNGG 3 cut(s) 244, 430, 431
StyI CCWWGG 2 cut(s) 283, 445
TaaI ACNGT 2 cut(s) 108, 191
TaiI ACGT 4 cut(s) 123, 147, 180, 402
TaqI TCGA 5 cut(s) 128, 391, 409, 423, 661
TasI AATT 1 cut(s) 332
TatI WGTACW 1 cut(s) 318
TauI GCSGC 5 cut(s) 11, 140, 212, 215, 568
TfiI GAWTC 1 cut(s) 411
TscAI CASTG 2 cut(s) 139, 468
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 502, 625
TspMI CCCGGG 1 cut(s) 431
TspRI CASTG 2 cut(s) 139, 468
XapI RAATTY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 186
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.