RLG00000005827

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014917
Physical Location & Seq
Reverse (-)
2186824 .. 2188486
1663 bp
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UTR
Exon/CDS
Intron
RLM00000005827

Sequence Viewer

Length: 675 bp
ATGATGGTGGCAAGGTTAATGAGATTGCTCCCCAAAAGAGCTTCAATTCGTTCTTCGTCTTCTTCAGTAAAGCGTCTATTTTCTTCAAGGCCGTCTTCCTCCGACGTCGTATCGAGCACGGCTGCTGACCTTGCCGGCGTCGGCGATGATGATGATGAAGATGGGCCCGTCTACTCTAACCCAGCTGCTGCTGGTTCTTCTGCATCGGAGGCGGTTTTGCTACCCACTCTGCTTCAGCCACGTGTGGTGGTCTTCGATGGGGTCTGCCATCTCTGCCATGGAGGGGTGAAGTGGGTGATTAAGGCAGACAAGCACAGGAAGATCAAATTCTGCTGCCTACAGTCTGAGACAGCTGAGCCTTATCTGAGATTGTGTGGGCTTGATCGAGAGGATGTTCTTCGTCGATTTTTGTTTGTTGAAGGCCCTGGGCTGTATCACCAAGGTTCCACTGCTGCGCTGAAAGTATTGTCATACTTGCCTCTCCCTTACTCTGCTTTAAGCACACTCATGGTAGTCCCAACTCCTTTGAGAGAAATTGTCTATGATTATGTTGCCAAACGACGCTATGACTGGTTTGGCAAGTCTGAAGATTGCTTGGTTTTGAAAGAGAAAGAGTTGCTCGAGCGTTTCATTGATAGGGAAGAGTTGATTGCTCGAGGTCGATCAGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

225

Amino Acids

24.94

Weight (kDa)

8.18

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 83 - 194 6.6e-26 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24095 AT1G24095
fragaria_vesca FvH4_4g35000
malus_domestica MD13G1087000.v1.1 MD16G1087300.v1.1
pyrus_communis pycom13g07500 pycom16g07490
rosa_chinensis RchiOBHm_Chr4g0444521
rosa_laevigata RLG00000005827
rosa_multiflora Rmu_co8099458.1_g000001 Rmu_sc0019173.1_g000001
rosa_rugosa Rorug04G0353300.1
rosa_samantha Rh4AG413600 Rh4BG425100 Rh4CG439700 Rh4DG420600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 171
AciI CCGC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 3 cut(s) 48, 218, 606
AcvI CACGTG 1 cut(s) 242
AcyI GRCGYC 2 cut(s) 105, 138
AfiI CCNNNNNNNGG 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 45, 87, 419, 604
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 3 cut(s) 41, 185, 353
AluI AGCT 3 cut(s) 41, 185, 353
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 341
AlwNI CAGNNNCTG 1 cut(s) 188
Ama87I CYCGRG 2 cut(s) 620, 654
AoxI GGCC 3 cut(s) 89, 164, 421
ApaI GGGCCC 1 cut(s) 168
ApeKI GCWGC 5 cut(s) 122, 185, 188, 333, 452
ApoI RAATTY 1 cut(s) 326
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 3 cut(s) 164, 165, 422
AsuHPI GGTGA 3 cut(s) 298, 307, 428
AvaI CYCGRG 2 cut(s) 620, 654
BaeGI GKGCMC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 242
BbsI GAAGAC 3 cut(s) 51, 87, 244
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 5 cut(s) 109, 172, 175, 320, 439
BccI CCATC 3 cut(s) 155, 251, 276
BceAI ACGGC 2 cut(s) 76, 135
BciT130I CCWGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 338
BisI GCNGC 5 cut(s) 123, 186, 189, 334, 453
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 5 cut(s) 124, 187, 190, 335, 454
Bme1390I CCNGG 1 cut(s) 426
BmeT110I CYCGRG 2 cut(s) 620, 654
BmgT120I GGNCC 3 cut(s) 164, 165, 422
BmiI GGNNCC 2 cut(s) 166, 445
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 212
BpiI GAAGAC 3 cut(s) 51, 87, 244
Bpu1102I GCTNAGC 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 242
BsaHI GRCGYC 2 cut(s) 105, 138
BsaJI CCNNGG 4 cut(s) 277, 424, 425, 439
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 4 cut(s) 277, 424, 425, 439
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 3 cut(s) 336, 345, 356
BseNI ACTGG 1 cut(s) 575
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 5 cut(s) 109, 172, 175, 320, 439
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 3 cut(s) 91, 166, 423
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 2 cut(s) 620, 654
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 3 cut(s) 91, 166, 423
BsoBI CYCGRG 2 cut(s) 620, 654
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 119, 168
Bsp143I GATC 3 cut(s) 321, 382, 662
Bsp1720I GCTNAGC 1 cut(s) 354
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 1 cut(s) 212
BspANI GGCC 3 cut(s) 91, 166, 423
BspCNI CTCAG 3 cut(s) 337, 346, 357
BspLI GGNNCC 2 cut(s) 166, 445
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 4 cut(s) 277, 424, 425, 439
BssMI GATC 3 cut(s) 321, 382, 662
BssNI GRCGYC 2 cut(s) 105, 138
BssT1I CCWWGG 2 cut(s) 277, 439
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 636
BstACI GRCGYC 2 cut(s) 105, 138
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 345, 354, 365
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 3 cut(s) 324, 385, 665
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 321, 382, 662
BstMWI GCNNNNNNNGC 3 cut(s) 131, 209, 273
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 338
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 5 cut(s) 109, 172, 175, 320, 439
BstV2I GAAGAC 3 cut(s) 51, 87, 244
BsuRI GGCC 3 cut(s) 91, 166, 423
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 188
CfoI GCGC 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 164, 165, 422
CseI GACGC 3 cut(s) 62, 127, 570
CviAII CATG 2 cut(s) 278, 508
DdeI CTNAG 3 cut(s) 345, 354, 365
DpnI GATC 3 cut(s) 323, 384, 664
DpnII GATC 3 cut(s) 321, 382, 662
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco130I CCWWGG 2 cut(s) 277, 439
Eco24I GRGCYC 1 cut(s) 168
Eco57I CTGAAG 3 cut(s) 48, 218, 606
Eco72I CACGTG 1 cut(s) 242
Eco88I CYCGRG 2 cut(s) 620, 654
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 2 cut(s) 277, 439
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 277, 439
FaeI CATG 2 cut(s) 281, 511
FaiI YATR 6 cut(s) 279, 472, 509, 543, 549, 567
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 500
FatI CATG 2 cut(s) 277, 507
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 5 cut(s) 123, 186, 189, 334, 453
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 5 cut(s) 123, 186, 189, 334, 453
GlaI GCGC 1 cut(s) 456
GluI GCNGC 5 cut(s) 123, 186, 189, 334, 453
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 3 cut(s) 91, 166, 423
HapII CCGG 1 cut(s) 135
HgaI GACGC 3 cut(s) 62, 127, 570
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 2 cut(s) 105, 138
Hin1II CATG 2 cut(s) 281, 511
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HpaII CCGG 1 cut(s) 135
HphI GGTGA 3 cut(s) 298, 307, 428
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 6 cut(s) 103, 208, 346, 366, 586, 667
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 5 cut(s) 107, 110, 143, 405, 564
HpyAV CCTTC 1 cut(s) 413
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 2 cut(s) 105, 241
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 209, 273
HpyF3I CTNAG 3 cut(s) 345, 354, 365
HpySE526I ACGT 2 cut(s) 105, 241
Hsp92I GRCGYC 2 cut(s) 105, 138
Hsp92II CATG 2 cut(s) 281, 511
HspAI GCGC 1 cut(s) 455
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 321, 382, 662
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 7 cut(s) 148, 177, 195, 301, 411, 438, 556
Lsp1109I GCAGC 5 cut(s) 109, 172, 175, 320, 439
LweI GCATC 1 cut(s) 212
MaeII ACGT 2 cut(s) 105, 241
MalI GATC 3 cut(s) 323, 384, 664
MboI GATC 3 cut(s) 321, 382, 662
MhlI GDGCHC 2 cut(s) 119, 168
MluCI AATT 3 cut(s) 45, 326, 534
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 6 cut(s) 109, 202, 275, 382, 489, 650
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 3 cut(s) 17, 300, 497
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 2 cut(s) 185, 353
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 3 cut(s) 131, 209, 273
NaeI GCCGGC 1 cut(s) 136
NcoI CCATGG 1 cut(s) 277
NdeII GATC 3 cut(s) 321, 382, 662
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 281, 511
NlaIV GGNNCC 2 cut(s) 166, 445
PaeR7I CTCGAG 2 cut(s) 620, 654
PasI CCCWGGG 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 136
PkrI GCNGC 5 cut(s) 124, 187, 190, 335, 454
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
Ppu21I YACGTR 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 424
PspCI CACGTG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 166, 445
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 164, 165, 422
PspXI VCTCGAGB 2 cut(s) 620, 654
PstNI CAGNNNCTG 1 cut(s) 188
PvuII CAGCTG 2 cut(s) 185, 353
RseI CAYNNNNRTG 1 cut(s) 506
SaqAI TTAA 3 cut(s) 17, 300, 497
SatI GCNGC 5 cut(s) 123, 186, 189, 334, 453
Sau3AI GATC 3 cut(s) 321, 382, 662
Sau96I GGNCC 3 cut(s) 164, 165, 422
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 2 cut(s) 119, 168
SetI ASST 9 cut(s) 17, 43, 108, 132, 187, 244, 355, 445, 661
SfaNI GCATC 1 cut(s) 212
SfcI CTRYAG 1 cut(s) 338
Sfr274I CTCGAG 2 cut(s) 620, 654
SlaI CTCGAG 2 cut(s) 620, 654
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 2 cut(s) 620, 654
SmoI CTYRAG 2 cut(s) 620, 654
Sse9I AATT 3 cut(s) 45, 326, 534
SsiI CCGC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 2 cut(s) 277, 439
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 2 cut(s) 108, 244
TaqI TCGA 7 cut(s) 113, 255, 385, 403, 621, 655, 661
TasI AATT 3 cut(s) 45, 326, 534
Tru1I TTAA 3 cut(s) 17, 300, 497
Tru9I TTAA 3 cut(s) 17, 300, 497
TscAI CASTG 1 cut(s) 454
TseI GCWGC 5 cut(s) 122, 185, 188, 333, 452
TspDTI ATGAA 2 cut(s) 171, 619
TspRI CASTG 1 cut(s) 454
XapI RAATTY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XhoI CTCGAG 2 cut(s) 620, 654
XmiI GTMKAC 1 cut(s) 171
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.