pycom16g07490

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014917
Physical Location & Seq
Reverse (-)
4884984 .. 4885847
864 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07490.2

Sequence Viewer

Length: 681 bp
ATGACGGTGGCAAGGCTGATCAGATTGCTGCCGAAACTTACAAAAACAAGAGCTTCACTTTCTTCTCCATCTCCTTCGTTTAAATGTCTATTTTCTTCCAAAACACCGTTTCCGCAGGACGTCGTTTCGAGCACAGCTGCCGACCTCGCTGACATGGGCGAAGAAGAAGATGACGACGTGCCCATCTACTCTAACCCGACTGCTTCCGCGGCGGCGAAGATCATGCTACCCACTATCCTTCAGCCAGGCGTCGTGGTGTACGATGGGGTCTGCCATCTGTGCCATGGAGGGGTGAAGTGGGTGATCAAAGCAGACAAGTACAGGAAGATCAAATTCTGCTGCGTCCAATCGGAGGCTGCCGAGCCTTTCCTGAGATTGTGTGGTCTTGATCGAGAGGACGTTCTTCGTCGATTTTTGTTCGTCGAAGGCCCGGGGCTTTACCACCAAGGCTCTACTGCTGCACTGAGAGTATTGTCCTACTTGCCTCTCCCTTACTCTGCTTTGAGTGCTTTCATGGTGATCCCGACTCCTCTGAGAGAGATCATCTATGATTACGTTGCCAAGCGGCGCTACGACATCGGTGGCAAGTCCGAAGATTGCTTGGTTTTGCAAGAGAAAGAGCTGCTGGAGCGTTTCATTGACAGGGAAGAGCTGATGGATCGAGCTCCCCCGGATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

227

Amino Acids

25.25

Weight (kDa)

5.98

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24095 AT1G24095
fragaria_vesca FvH4_4g35000
malus_domestica MD13G1087000.v1.1 MD16G1087300.v1.1
pyrus_communis pycom13g07500 pycom16g07490
rosa_chinensis RchiOBHm_Chr4g0444521
rosa_laevigata RLG00000005827
rosa_multiflora Rmu_co8099458.1_g000001 Rmu_sc0019173.1_g000001
rosa_rugosa Rorug04G0353300.1
rosa_samantha Rh4AG413600 Rh4BG425100 Rh4CG439700 Rh4DG420600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccII CGCG 1 cut(s) 209
AciI CCGC 5 cut(s) 113, 207, 209, 212, 565
AclWI GGATC 2 cut(s) 514, 666
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 2 cut(s) 120, 249
AfaI GTAC 2 cut(s) 260, 320
AfiI CCNNNNNNNGG 2 cut(s) 289, 352
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 5 cut(s) 53, 137, 622, 652, 665
AluI AGCT 5 cut(s) 53, 137, 622, 652, 665
Alw21I GWGCWC 2 cut(s) 134, 667
AlwI GGATC 2 cut(s) 514, 666
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 6 cut(s) 28, 137, 339, 356, 458, 622
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 3 cut(s) 431, 432, 671
AsuHPI GGTGA 3 cut(s) 304, 313, 529
AvaI CYCGRG 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 667
Bbv12I GWGCWC 2 cut(s) 134, 667
BbvI GCAGC 6 cut(s) 15, 124, 326, 343, 445, 609
BccI CCATC 5 cut(s) 76, 191, 257, 282, 649
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 2 cut(s) 18, 303
BcnI CCSGG 3 cut(s) 431, 432, 671
BfoI RGCGCY 1 cut(s) 571
BisI GCNGC 9 cut(s) 29, 138, 210, 213, 340, 357, 459, 566, 623
BlsI GCNGC 9 cut(s) 30, 139, 211, 214, 341, 358, 460, 567, 624
Bme1390I CCNGG 4 cut(s) 246, 431, 432, 671
BmeT110I CYCGRG 1 cut(s) 430
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 428
BmrFI CCNGG 4 cut(s) 246, 431, 432, 671
BpmI CTGGAG 1 cut(s) 647
BpuMI CCSGG 3 cut(s) 431, 432, 671
BsaHI GRCGYC 2 cut(s) 120, 249
BsaJI CCNNGG 6 cut(s) 207, 283, 430, 431, 445, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 352
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 6 cut(s) 207, 283, 430, 431, 445, 669
BseLI CCNNNNNNNGG 2 cut(s) 289, 352
BseMII CTCAG 3 cut(s) 362, 455, 524
BseRI GAGGAG 1 cut(s) 519
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 6 cut(s) 15, 124, 326, 343, 445, 609
BsgI GTGCAG 1 cut(s) 444
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 134, 667
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 2 cut(s) 431, 671
BslI CCNNNNNNNGG 2 cut(s) 289, 352
BsnI GGCC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 3 cut(s) 134, 183, 667
Bsp143I GATC 8 cut(s) 18, 219, 303, 327, 388, 519, 540, 658
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 5 cut(s) 113, 207, 209, 212, 565
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 3 cut(s) 363, 456, 525
BspFNI CGCG 1 cut(s) 209
BspPI GGATC 2 cut(s) 514, 666
BspQI GCTCTTC 1 cut(s) 642
BssECI CCNNGG 6 cut(s) 207, 283, 430, 431, 445, 669
BssMI GATC 8 cut(s) 18, 219, 303, 327, 388, 519, 540, 658
BssNI GRCGYC 2 cut(s) 120, 249
BssT1I CCWWGG 2 cut(s) 283, 445
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 7, 108
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 2 cut(s) 120, 249
BstDEI CTNAG 3 cut(s) 371, 464, 533
BstDSI CCRYGG 2 cut(s) 207, 283
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 8 cut(s) 21, 222, 306, 330, 391, 522, 543, 661
BstMBI GATC 8 cut(s) 18, 219, 303, 327, 388, 519, 540, 658
BstMWI GCNNNNNNNGC 5 cut(s) 146, 209, 279, 506, 628
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 4 cut(s) 244, 429, 430, 669
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 6 cut(s) 15, 124, 326, 343, 445, 609
BsuRI GGCC 1 cut(s) 429
BtgI CCRYGG 2 cut(s) 207, 283
BtrI CACGTC 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 461
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 428
Cfr42I CCGCGG 1 cut(s) 210
Cfr9I CCCGGG 1 cut(s) 430
CseI GACGC 2 cut(s) 238, 331
Csp6I GTAC 2 cut(s) 259, 319
CviAII CATG 4 cut(s) 154, 223, 284, 514
CviQI GTAC 2 cut(s) 259, 319
DdeI CTNAG 3 cut(s) 371, 464, 533
DpnI GATC 8 cut(s) 20, 221, 305, 329, 390, 521, 542, 660
DpnII GATC 8 cut(s) 18, 219, 303, 327, 388, 519, 540, 658
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Ecl136II GAGCTC 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 283, 445
Eco24I GRGCYC 1 cut(s) 667
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 283, 445
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 2 cut(s) 283, 445
FaeI CATG 4 cut(s) 157, 226, 287, 517
FaiI YATR 5 cut(s) 155, 224, 285, 515, 549
FatI CATG 4 cut(s) 153, 222, 283, 513
FbaI TGATCA 2 cut(s) 18, 303
Fnu4HI GCNGC 9 cut(s) 29, 138, 210, 213, 340, 357, 459, 566, 623
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 9 cut(s) 29, 138, 210, 213, 340, 357, 459, 566, 623
GlaI GCGC 1 cut(s) 569
GluI GCNGC 9 cut(s) 29, 138, 210, 213, 340, 357, 459, 566, 623
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 1 cut(s) 429
HapII CCGG 2 cut(s) 431, 671
HgaI GACGC 2 cut(s) 238, 331
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 2 cut(s) 120, 249
Hin1II CATG 4 cut(s) 157, 226, 287, 517
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 1 cut(s) 526
HpaII CCGG 2 cut(s) 431, 671
HphI GGTGA 3 cut(s) 304, 313, 529
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 23, 352, 534, 592
Hpy188III TCNNGA 4 cut(s) 370, 386, 392, 523
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 5 cut(s) 125, 179, 254, 411, 425
HpyAV CCTTC 3 cut(s) 84, 248, 419
HpyCH4III ACNGT 2 cut(s) 7, 108
HpyCH4IV ACGT 4 cut(s) 120, 177, 399, 555
HpyCH4V TGCA 2 cut(s) 461, 610
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 209, 279, 506, 628
HpyF3I CTNAG 3 cut(s) 371, 464, 533
HpySE526I ACGT 4 cut(s) 120, 177, 399, 555
Hsp92I GRCGYC 2 cut(s) 120, 249
Hsp92II CATG 4 cut(s) 157, 226, 287, 517
HspAI GCGC 1 cut(s) 568
Ksp22I TGATCA 2 cut(s) 18, 303
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 8 cut(s) 18, 219, 303, 327, 388, 519, 540, 658
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 2 cut(s) 628, 670
LpnPI CCDG 8 cut(s) 101, 231, 258, 307, 383, 444, 611, 628
Lsp1109I GCAGC 6 cut(s) 15, 124, 326, 343, 445, 609
MaeII ACGT 4 cut(s) 120, 177, 399, 555
MalI GATC 8 cut(s) 20, 221, 305, 329, 390, 521, 542, 660
MboI GATC 8 cut(s) 18, 219, 303, 327, 388, 519, 540, 658
MhlI GDGCHC 3 cut(s) 134, 183, 667
MluCI AATT 1 cut(s) 332
MlyI GAGTC 1 cut(s) 520
MnlI CCTC 6 cut(s) 155, 281, 346, 388, 495, 540
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 2 cut(s) 137, 209
MspI CCGG 2 cut(s) 431, 671
MspR9I CCNGG 4 cut(s) 246, 431, 432, 671
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 5 cut(s) 146, 209, 279, 506, 628
NciI CCSGG 3 cut(s) 431, 432, 671
NcoI CCATGG 1 cut(s) 283
NdeII GATC 8 cut(s) 18, 219, 303, 327, 388, 519, 540, 658
NlaIII CATG 4 cut(s) 157, 226, 287, 517
NmeAIII GCCGAG 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PkrI GCNGC 9 cut(s) 30, 139, 211, 214, 341, 358, 460, 567, 624
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 667
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspPI GGNCC 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 260, 320
RsaNI GTAC 2 cut(s) 259, 319
SacI GAGCTC 1 cut(s) 667
SacII CCGCGG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 9 cut(s) 29, 138, 210, 213, 340, 357, 459, 566, 623
Sau3AI GATC 8 cut(s) 18, 219, 303, 327, 388, 519, 540, 658
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 4 cut(s) 246, 431, 432, 671
SduI GDGCHC 3 cut(s) 134, 183, 667
Sfr303I CCGCGG 1 cut(s) 210
SgrBI CCGCGG 1 cut(s) 210
SmaI CCCGGG 1 cut(s) 432
Sse9I AATT 1 cut(s) 332
SsiI CCGC 5 cut(s) 113, 207, 209, 212, 565
SstI GAGCTC 1 cut(s) 667
StyD4I CCNGG 4 cut(s) 244, 429, 430, 669
StyI CCWWGG 2 cut(s) 283, 445
TaaI ACNGT 2 cut(s) 7, 108
TaiI ACGT 4 cut(s) 123, 180, 402, 558
TaqI TCGA 5 cut(s) 128, 391, 409, 423, 661
TasI AATT 1 cut(s) 332
TatI WGTACW 1 cut(s) 318
TauI GCSGC 3 cut(s) 212, 215, 568
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 468
TseI GCWGC 6 cut(s) 28, 137, 339, 356, 458, 622
TspDTI ATGAA 2 cut(s) 502, 625
TspMI CCCGGG 1 cut(s) 430
TspRI CASTG 1 cut(s) 468
XapI RAATTY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 430
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.