MD16G1087300.v1.1

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014917
Physical Location & Seq
Reverse (-)
6033493 .. 6034464
972 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1087300.v1.1.491

Sequence Viewer

Length: 681 bp
ATGACGGCGGCAAGGCTGATCAGATTGCTGCCGAAACTTACAAAAACAAGAGCTTCACTTTCTTCTCCATCTCCTTCGTTTAAATGTCTATTTTCTTCCAAAACACCGTTTCCGCAGGACGTCGTTTCGAGCACTGCTGCCGACCTCGCTGACATGGGCGAAGAAGAAGATGACGACGTGCCCATCTACTGTAACCCGACTGCTTCCACGGTGGCGAAGATCATGCTACCCACTATCCTTCAGCCAGGCGTCGTGGTGTACGATGGGGTCTGCCATCTCTGCCATGGAGGGGTGAAGTGGGTGATCAAAGCAGACAAGTACAGGAAGATCAAATTCTGCTGCGTCCAATCGGAGGCTGCCGAGCCTTACCTGAGATTGTGTGGTCTTGATCGAGAGGACGTTCTTCGTCGATTTTTGTTCGTCGAAGGCCCGGGGCTTTACCACCAAGGCTCTACTGCTGCACTGAGAGTATTGTCCTACTTGCCTCTCCCTTACTCTGCTTTGAGTGCTTTCATGGTGATCCCGACTCCTCTGAGAGAGATGATCTATGATTACGTTGCCAAGCGGCGCCACGACATCGGTGGCAAGTCCGAAGATTGCTTGGTTTTGCAAGAGAAAGAGTTGCTGGAGCGTTTCATTGATAGGGAAGAGCTTATGGACCGAGCTCCCCCAGATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

227

Amino Acids

25.3

Weight (kDa)

6.11

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 85 - 196 5e-24 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24095 AT1G24095
fragaria_vesca FvH4_4g35000
malus_domestica MD13G1087000.v1.1 MD16G1087300.v1.1
pyrus_communis pycom13g07500 pycom16g07490
rosa_chinensis RchiOBHm_Chr4g0444521
rosa_laevigata RLG00000005827
rosa_multiflora Rmu_co8099458.1_g000001 Rmu_sc0019173.1_g000001
rosa_rugosa Rorug04G0353300.1
rosa_samantha Rh4AG413600 Rh4BG425100 Rh4CG439700 Rh4DG420600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 567
AciI CCGC 3 cut(s) 8, 113, 565
AclWI GGATC 1 cut(s) 514
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 3 cut(s) 120, 249, 568
AfaI GTAC 2 cut(s) 260, 320
AfiI CCNNNNNNNGG 2 cut(s) 289, 352
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 53, 652, 665
AluI AGCT 3 cut(s) 53, 652, 665
Alw21I GWGCWC 2 cut(s) 134, 667
AlwI GGATC 1 cut(s) 514
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 5 cut(s) 28, 137, 339, 356, 458
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 2 cut(s) 428, 658
AsuC2I CCSGG 2 cut(s) 431, 432
AsuHPI GGTGA 3 cut(s) 304, 313, 529
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 667
Bbv12I GWGCWC 2 cut(s) 134, 667
BbvI GCAGC 5 cut(s) 15, 124, 326, 343, 445
BccI CCATC 4 cut(s) 76, 191, 257, 282
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 2 cut(s) 18, 303
BcnI CCSGG 2 cut(s) 431, 432
BfoI RGCGCY 1 cut(s) 571
BisI GCNGC 7 cut(s) 9, 29, 138, 340, 357, 459, 566
BlsI GCNGC 7 cut(s) 10, 30, 139, 341, 358, 460, 567
Bme1390I CCNGG 3 cut(s) 246, 431, 432
Bme18I GGWCC 1 cut(s) 658
BmeT110I CYCGRG 1 cut(s) 430
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 428, 658
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 3 cut(s) 246, 431, 432
BpmI CTGGAG 1 cut(s) 647
BpuMI CCSGG 2 cut(s) 431, 432
BsaHI GRCGYC 3 cut(s) 120, 249, 568
BsaJI CCNNGG 5 cut(s) 207, 283, 430, 431, 445
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 352
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 5 cut(s) 207, 283, 430, 431, 445
BseLI CCNNNNNNNGG 2 cut(s) 289, 352
BseMII CTCAG 3 cut(s) 362, 455, 524
BseRI GAGGAG 1 cut(s) 519
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 5 cut(s) 15, 124, 326, 343, 445
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 567
BsiHKAI GWGCWC 2 cut(s) 134, 667
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 289, 352
BsnI GGCC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 3 cut(s) 134, 183, 667
Bsp143I GATC 7 cut(s) 18, 219, 303, 327, 388, 519, 543
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 3 cut(s) 8, 113, 565
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 3 cut(s) 363, 456, 525
BspLI GGNNCC 1 cut(s) 569
BspPI GGATC 1 cut(s) 514
BspQI GCTCTTC 1 cut(s) 642
BspT107I GGYRCC 1 cut(s) 567
BssECI CCNNGG 5 cut(s) 207, 283, 430, 431, 445
BssMI GATC 7 cut(s) 18, 219, 303, 327, 388, 519, 543
BssNI GRCGYC 3 cut(s) 120, 249, 568
BssT1I CCWWGG 2 cut(s) 283, 445
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 108, 191, 211
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 3 cut(s) 120, 249, 568
BstDEI CTNAG 3 cut(s) 371, 464, 533
BstDSI CCRYGG 2 cut(s) 207, 283
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 7 cut(s) 21, 222, 306, 330, 391, 522, 546
BstMBI GATC 7 cut(s) 18, 219, 303, 327, 388, 519, 543
BstMWI GCNNNNNNNGC 3 cut(s) 146, 279, 506
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 3 cut(s) 244, 429, 430
BstSLI GKGCMC 1 cut(s) 183
BstV1I GCAGC 5 cut(s) 15, 124, 326, 343, 445
BsuRI GGCC 1 cut(s) 429
BtgI CCRYGG 2 cut(s) 207, 283
BtrI CACGTC 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 461
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 2 cut(s) 428, 658
Cfr9I CCCGGG 1 cut(s) 430
CseI GACGC 2 cut(s) 238, 331
Csp6I GTAC 2 cut(s) 259, 319
CviAII CATG 4 cut(s) 154, 223, 284, 514
CviQI GTAC 2 cut(s) 259, 319
DdeI CTNAG 3 cut(s) 371, 464, 533
DinI GGCGCC 1 cut(s) 569
DpnI GATC 7 cut(s) 20, 221, 305, 329, 390, 521, 545
DpnII GATC 7 cut(s) 18, 219, 303, 327, 388, 519, 543
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Ecl136II GAGCTC 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 283, 445
Eco24I GRGCYC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 658
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 283, 445
EcoT38I GRGCYC 1 cut(s) 667
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
ErhI CCWWGG 2 cut(s) 283, 445
FaeI CATG 4 cut(s) 157, 226, 287, 517
FaiI YATR 6 cut(s) 155, 224, 285, 515, 549, 656
FatI CATG 4 cut(s) 153, 222, 283, 513
FbaI TGATCA 2 cut(s) 18, 303
Fnu4HI GCNGC 7 cut(s) 9, 29, 138, 340, 357, 459, 566
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 7 cut(s) 9, 29, 138, 340, 357, 459, 566
GlaI GCGC 1 cut(s) 569
GluI GCNGC 7 cut(s) 9, 29, 138, 340, 357, 459, 566
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 1 cut(s) 429
HapII CCGG 1 cut(s) 431
HgaI GACGC 2 cut(s) 238, 331
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 3 cut(s) 120, 249, 568
Hin1II CATG 4 cut(s) 157, 226, 287, 517
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 1 cut(s) 526
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 304, 313, 529
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 23, 352, 534, 592
Hpy188III TCNNGA 3 cut(s) 386, 392, 523
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 5 cut(s) 125, 179, 254, 411, 425
HpyAV CCTTC 3 cut(s) 84, 248, 419
HpyCH4III ACNGT 3 cut(s) 108, 191, 211
HpyCH4IV ACGT 4 cut(s) 120, 177, 399, 555
HpyCH4V TGCA 2 cut(s) 461, 610
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 279, 506
HpyF3I CTNAG 3 cut(s) 371, 464, 533
HpySE526I ACGT 4 cut(s) 120, 177, 399, 555
Hsp92I GRCGYC 3 cut(s) 120, 249, 568
Hsp92II CATG 4 cut(s) 157, 226, 287, 517
HspAI GCGC 1 cut(s) 568
KasI GGCGCC 1 cut(s) 567
Ksp22I TGATCA 2 cut(s) 18, 303
Kzo9I GATC 7 cut(s) 18, 219, 303, 327, 388, 519, 543
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 2 cut(s) 628, 670
LpnPI CCDG 7 cut(s) 101, 231, 258, 307, 383, 444, 611
Lsp1109I GCAGC 5 cut(s) 15, 124, 326, 343, 445
MaeII ACGT 4 cut(s) 120, 177, 399, 555
MaeIII GTNAC 1 cut(s) 191
MalI GATC 7 cut(s) 20, 221, 305, 329, 390, 521, 545
MboI GATC 7 cut(s) 18, 219, 303, 327, 388, 519, 543
MhlI GDGCHC 3 cut(s) 134, 183, 667
MluCI AATT 1 cut(s) 332
Mly113I GGCGCC 1 cut(s) 568
MlyI GAGTC 1 cut(s) 520
MnlI CCTC 6 cut(s) 155, 281, 346, 388, 495, 540
MseI TTAA 1 cut(s) 81
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 3 cut(s) 246, 431, 432
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 146, 279, 506
NarI GGCGCC 1 cut(s) 568
NciI CCSGG 2 cut(s) 431, 432
NcoI CCATGG 1 cut(s) 283
NdeII GATC 7 cut(s) 18, 219, 303, 327, 388, 519, 543
NlaIII CATG 4 cut(s) 157, 226, 287, 517
NlaIV GGNNCC 1 cut(s) 569
NmeAIII GCCGAG 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PkrI GCNGC 7 cut(s) 10, 30, 139, 341, 358, 460, 567
PleI GAGTC 1 cut(s) 520
PluTI GGCGCC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 667
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 569
PspPI GGNCC 2 cut(s) 428, 658
RsaI GTAC 2 cut(s) 260, 320
RsaNI GTAC 2 cut(s) 259, 319
SacI GAGCTC 1 cut(s) 667
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 7 cut(s) 9, 29, 138, 340, 357, 459, 566
Sau3AI GATC 7 cut(s) 18, 219, 303, 327, 388, 519, 543
Sau96I GGNCC 2 cut(s) 428, 658
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 3 cut(s) 246, 431, 432
SduI GDGCHC 3 cut(s) 134, 183, 667
SetI ASST 9 cut(s) 55, 123, 147, 180, 372, 402, 558, 654, 667
SfoI GGCGCC 1 cut(s) 569
SinI GGWCC 1 cut(s) 658
SmaI CCCGGG 1 cut(s) 432
Sse9I AATT 1 cut(s) 332
SsiI CCGC 3 cut(s) 8, 113, 565
SspDI GGCGCC 1 cut(s) 567
SstI GAGCTC 1 cut(s) 667
StyD4I CCNGG 3 cut(s) 244, 429, 430
StyI CCWWGG 2 cut(s) 283, 445
TaaI ACNGT 3 cut(s) 108, 191, 211
TaiI ACGT 4 cut(s) 123, 180, 402, 558
TaqI TCGA 4 cut(s) 128, 391, 409, 423
TaqII GACCGA 1 cut(s) 675
TasI AATT 1 cut(s) 332
TatI WGTACW 1 cut(s) 318
TauI GCSGC 2 cut(s) 11, 568
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 2 cut(s) 139, 468
TseI GCWGC 5 cut(s) 28, 137, 339, 356, 458
TspDTI ATGAA 2 cut(s) 502, 625
TspMI CCCGGG 1 cut(s) 430
TspRI CASTG 2 cut(s) 139, 468
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 2 cut(s) 281, 578
XmaI CCCGGG 1 cut(s) 430
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.