RchiOBHm_Chr4g0444521

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014917
Physical Location & Seq
Forward (+)
65226251 .. 65228667
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41216

Sequence Viewer

Length: 666 bp
ATGATGGTGGCAAGGCTAATGAGATTGCTCCCCAAAAGAGCTTCAATTCGTTCTTCGTCTTCATCAGTAAAGCGTCTATTTTCTTCAAGGCCGTCTTCCTCCGACGTCGTTTCGAGCACGGCTGCTGACCTTGCCGGCGTCGGCGATGATGATGATGAAGATGGGCCCGTCTACTCTAACCCAGCTTCTTCTGCATCGGAGGCCGTTTTGCTACCCACTCTGCTTCAGCCACGTGTGGTGGTCTTCGATGGGGTCTGCCATCTCTGCCATGGAGGGGTGAAGTGGGTGATTAAGGCAGACAAGCACAGGAAGATCAAATTCTGCTGCCTACAGTCTGAGACAGCTGAGCCTTATCTGAGATTGTGTGGGCTTGATCGAGAGGATGTTCTTCGTCGATTTTTGTTTGTTGAAGGCCCTGGGCTATATCACCAAGGCTCCACTGCTGCGCTGAAAGTATTGTCATACTTGCCTCTCCCTTACTCTGCTTTAAGCACACTCATGGTAGTCCCAACTCCTTTGAGAGAAATTGTCTATGATTATGTTGCCAAACGACGCTATGACTGGTTTGGCAAGTCTGAAGATTGCTTGGTTTTGAAAGAGAAAGAGTTGCTCGAGCGTTTCATTGATAGGGAAGAGTTGATGGCTCGAGGTCGATCAGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

221

Amino Acids

24.76

Weight (kDa)

8.18

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 80 - 191 6.4e-26 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24095 AT1G24095
fragaria_vesca FvH4_4g35000
malus_domestica MD13G1087000.v1.1 MD16G1087300.v1.1
pyrus_communis pycom13g07500 pycom16g07490
rosa_chinensis RchiOBHm_Chr4g0444521
rosa_laevigata RLG00000005827
rosa_multiflora Rmu_co8099458.1_g000001 Rmu_sc0019173.1_g000001
rosa_rugosa Rorug04G0353300.1
rosa_samantha Rh4AG413600 Rh4BG425100 Rh4CG439700 Rh4DG420600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 2 cut(s) 209, 597
AcvI CACGTG 1 cut(s) 233
AcyI GRCGYC 2 cut(s) 105, 138
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 4 cut(s) 45, 87, 410, 595
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 3 cut(s) 41, 185, 344
AluI AGCT 3 cut(s) 41, 185, 344
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 332
Ama87I CYCGRG 2 cut(s) 611, 645
AoxI GGCC 4 cut(s) 89, 164, 201, 412
ApaI GGGCCC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 122, 324, 443
ApoI RAATTY 1 cut(s) 317
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 3 cut(s) 164, 165, 413
AsuHPI GGTGA 3 cut(s) 289, 298, 419
AvaI CYCGRG 2 cut(s) 611, 645
BaeGI GKGCMC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 233
BbsI GAAGAC 3 cut(s) 51, 87, 235
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 109, 311, 430
BccI CCATC 4 cut(s) 155, 242, 267, 634
BceAI ACGGC 3 cut(s) 76, 135, 188
BciT130I CCWGG 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 329
BisI GCNGC 3 cut(s) 123, 325, 444
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 3 cut(s) 124, 326, 445
Bme1390I CCNGG 1 cut(s) 417
BmeT110I CYCGRG 2 cut(s) 611, 645
BmgT120I GGNCC 3 cut(s) 164, 165, 413
BmiI GGNNCC 2 cut(s) 166, 436
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 203
BpiI GAAGAC 3 cut(s) 51, 87, 235
Bpu1102I GCTNAGC 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 233
BsaHI GRCGYC 2 cut(s) 105, 138
BsaJI CCNNGG 4 cut(s) 268, 415, 416, 430
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 566
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 4 cut(s) 268, 415, 416, 430
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 3 cut(s) 327, 336, 347
BseNI ACTGG 1 cut(s) 566
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 3 cut(s) 109, 311, 430
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 4 cut(s) 91, 166, 203, 414
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 2 cut(s) 611, 645
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 4 cut(s) 91, 166, 203, 414
BsoBI CYCGRG 2 cut(s) 611, 645
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 119, 168
Bsp143I GATC 3 cut(s) 312, 373, 653
Bsp1720I GCTNAGC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 268
BspANI GGCC 4 cut(s) 91, 166, 203, 414
BspCNI CTCAG 3 cut(s) 328, 337, 348
BspLI GGNNCC 2 cut(s) 166, 436
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 4 cut(s) 268, 415, 416, 430
BssMI GATC 3 cut(s) 312, 373, 653
BssNI GRCGYC 2 cut(s) 105, 138
BssT1I CCWWGG 2 cut(s) 268, 430
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 1 cut(s) 627
BstACI GRCGYC 2 cut(s) 105, 138
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 336, 345, 356
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 3 cut(s) 315, 376, 656
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 3 cut(s) 312, 373, 653
BstMWI GCNNNNNNNGC 4 cut(s) 131, 191, 200, 264
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 415
BstSFI CTRYAG 1 cut(s) 329
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 109, 311, 430
BstV2I GAAGAC 3 cut(s) 51, 87, 235
BsuRI GGCC 4 cut(s) 91, 166, 203, 414
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 164, 165, 413
CseI GACGC 3 cut(s) 62, 127, 561
CviAII CATG 2 cut(s) 269, 499
DdeI CTNAG 3 cut(s) 336, 345, 356
DpnI GATC 3 cut(s) 314, 375, 655
DpnII GATC 3 cut(s) 312, 373, 653
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 268, 430
Eco24I GRGCYC 1 cut(s) 168
Eco57I CTGAAG 2 cut(s) 209, 597
Eco72I CACGTG 1 cut(s) 233
Eco88I CYCGRG 2 cut(s) 611, 645
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 268, 430
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 268, 430
FaeI CATG 2 cut(s) 272, 502
FaiI YATR 7 cut(s) 270, 424, 463, 500, 534, 540, 558
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 491
FatI CATG 2 cut(s) 268, 498
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 123, 325, 444
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 3 cut(s) 123, 325, 444
GlaI GCGC 1 cut(s) 447
GluI GCNGC 3 cut(s) 123, 325, 444
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 4 cut(s) 91, 166, 203, 414
HapII CCGG 1 cut(s) 135
HgaI GACGC 3 cut(s) 62, 127, 561
HhaI GCGC 1 cut(s) 448
Hin1I GRCGYC 2 cut(s) 105, 138
Hin1II CATG 2 cut(s) 272, 502
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HpaII CCGG 1 cut(s) 135
HphI GGTGA 3 cut(s) 289, 298, 419
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 6 cut(s) 103, 199, 337, 357, 577, 658
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 5 cut(s) 107, 110, 143, 396, 555
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 2 cut(s) 105, 232
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 191, 200, 264
HpyF3I CTNAG 3 cut(s) 336, 345, 356
HpySE526I ACGT 2 cut(s) 105, 232
Hsp92I GRCGYC 2 cut(s) 105, 138
Hsp92II CATG 2 cut(s) 272, 502
HspAI GCGC 1 cut(s) 446
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 312, 373, 653
LmnI GCTCC 2 cut(s) 33, 440
LpnPI CCDG 6 cut(s) 148, 195, 292, 402, 429, 547
Lsp1109I GCAGC 3 cut(s) 109, 311, 430
LweI GCATC 1 cut(s) 203
MaeII ACGT 2 cut(s) 105, 232
MalI GATC 3 cut(s) 314, 375, 655
MboI GATC 3 cut(s) 312, 373, 653
MhlI GDGCHC 2 cut(s) 119, 168
MluCI AATT 3 cut(s) 45, 317, 525
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 6 cut(s) 109, 193, 266, 373, 480, 641
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 2 cut(s) 291, 488
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 4 cut(s) 131, 191, 200, 264
NaeI GCCGGC 1 cut(s) 136
NcoI CCATGG 1 cut(s) 268
NdeII GATC 3 cut(s) 312, 373, 653
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 272, 502
NlaIV GGNNCC 2 cut(s) 166, 436
PaeR7I CTCGAG 2 cut(s) 611, 645
PasI CCCWGGG 1 cut(s) 416
PdiI GCCGGC 1 cut(s) 136
PkrI GCNGC 3 cut(s) 124, 326, 445
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 415
PspCI CACGTG 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 166, 436
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 164, 165, 413
PspXI VCTCGAGB 2 cut(s) 611, 645
PvuII CAGCTG 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 2 cut(s) 291, 488
SatI GCNGC 3 cut(s) 123, 325, 444
Sau3AI GATC 3 cut(s) 312, 373, 653
Sau96I GGNCC 3 cut(s) 164, 165, 413
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 2 cut(s) 119, 168
SetI ASST 7 cut(s) 43, 108, 132, 187, 235, 346, 652
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 329
Sfr274I CTCGAG 2 cut(s) 611, 645
SlaI CTCGAG 2 cut(s) 611, 645
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 611, 645
SmoI CTYRAG 2 cut(s) 611, 645
Sse9I AATT 3 cut(s) 45, 317, 525
StyD4I CCNGG 1 cut(s) 415
StyI CCWWGG 2 cut(s) 268, 430
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 2 cut(s) 108, 235
TaqI TCGA 7 cut(s) 113, 246, 376, 394, 612, 646, 652
TasI AATT 3 cut(s) 45, 317, 525
Tru1I TTAA 2 cut(s) 291, 488
Tru9I TTAA 2 cut(s) 291, 488
TscAI CASTG 1 cut(s) 445
TseI GCWGC 3 cut(s) 122, 324, 443
TspDTI ATGAA 3 cut(s) 51, 171, 610
TspRI CASTG 1 cut(s) 445
XapI RAATTY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XhoI CTCGAG 2 cut(s) 611, 645
XmiI GTMKAC 1 cut(s) 171
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.