Rmu_co8099458.1_g000001

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8099458.1
OG0014917
Physical Location & Seq
Reverse (-)
32 .. 583
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8099458.1_g000001.1.cds

Sequence Viewer

Length: 447 bp
atgatggtggcaaggttaatgagattgctccccaaaagagcttcaattcgtccttcgtcttcatcagtaaagcgtctattttcttcaaggccgtcttcctccgacgtcgtttcgagcacggctgctgacctcgccggcgtcggcgatggtgatgatgaagatgggcccgtctactctaacccagcttcttctgcatcggaggccgttttgctacccactctgcttcagccacgtgtggtggtcttcgatggggtctgccatctctgccatggaggggtgaagtgggtgattaaggcagacaagcacaggaagatcaaattctgctgcctacagtctgagacagctgagccttatctgagattgtgtgggcttgatcgagaggatgttcttcgtcgatttttgtttgttgaaggccctgggctgtatcaccaaggctccactggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

148

Amino Acids

16.07

Weight (kDa)

8.67

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24095 AT1G24095
fragaria_vesca FvH4_4g35000
malus_domestica MD13G1087000.v1.1 MD16G1087300.v1.1
pyrus_communis pycom13g07500 pycom16g07490
rosa_chinensis RchiOBHm_Chr4g0444521
rosa_laevigata RLG00000005827
rosa_multiflora Rmu_co8099458.1_g000001 Rmu_sc0019173.1_g000001
rosa_rugosa Rorug04G0353300.1
rosa_samantha Rh4AG413600 Rh4BG425100 Rh4CG439700 Rh4DG420600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 209
AcvI CACGTG 1 cut(s) 233
AcyI GRCGYC 2 cut(s) 105, 138
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 3 cut(s) 45, 87, 410
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 3 cut(s) 41, 185, 344
AluI AGCT 3 cut(s) 41, 185, 344
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 4 cut(s) 89, 164, 201, 412
ApaI GGGCCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 122, 324
ApoI RAATTY 1 cut(s) 317
AspS9I GGNCC 3 cut(s) 164, 165, 413
AsuHPI GGTGA 4 cut(s) 161, 289, 298, 419
BaeGI GKGCMC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 233
BbsI GAAGAC 3 cut(s) 51, 87, 235
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 109, 311
BccI CCATC 4 cut(s) 140, 155, 242, 267
BceAI ACGGC 3 cut(s) 76, 135, 188
BciT130I CCWGG 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 329
BisI GCNGC 2 cut(s) 123, 325
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 2 cut(s) 124, 326
Bme1390I CCNGG 1 cut(s) 417
BmgT120I GGNCC 3 cut(s) 164, 165, 413
BmiI GGNNCC 2 cut(s) 166, 436
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 203
BpiI GAAGAC 3 cut(s) 51, 87, 235
Bpu1102I GCTNAGC 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 233
BsaHI GRCGYC 2 cut(s) 105, 138
BsaJI CCNNGG 4 cut(s) 268, 415, 416, 430
BsaXI ACNNNNNCTCC 1 cut(s) 419
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 445
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 4 cut(s) 268, 415, 416, 430
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 3 cut(s) 327, 336, 347
BseNI ACTGG 1 cut(s) 445
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 2 cut(s) 109, 311
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 4 cut(s) 91, 166, 203, 414
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 4 cut(s) 91, 166, 203, 414
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 119, 168
Bsp143I GATC 2 cut(s) 312, 373
Bsp1720I GCTNAGC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 268
BspANI GGCC 4 cut(s) 91, 166, 203, 414
BspCNI CTCAG 3 cut(s) 328, 337, 348
BspLI GGNNCC 2 cut(s) 166, 436
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 4 cut(s) 268, 415, 416, 430
BssMI GATC 2 cut(s) 312, 373
BssNI GRCGYC 2 cut(s) 105, 138
BssT1I CCWWGG 2 cut(s) 268, 430
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 333
BstACI GRCGYC 2 cut(s) 105, 138
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 336, 345, 356
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 2 cut(s) 315, 376
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 2 cut(s) 312, 373
BstMWI GCNNNNNNNGC 4 cut(s) 131, 191, 200, 264
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 415
BstSFI CTRYAG 1 cut(s) 329
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 109, 311
BstV2I GAAGAC 3 cut(s) 51, 87, 235
BsuRI GGCC 4 cut(s) 91, 166, 203, 414
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 164, 165, 413
CseI GACGC 2 cut(s) 62, 127
CviAII CATG 1 cut(s) 269
DdeI CTNAG 3 cut(s) 336, 345, 356
DpnI GATC 2 cut(s) 314, 375
DpnII GATC 2 cut(s) 312, 373
Eco130I CCWWGG 2 cut(s) 268, 430
Eco24I GRGCYC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 209
Eco72I CACGTG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 268, 430
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 268, 430
FaeI CATG 1 cut(s) 272
FaiI YATR 1 cut(s) 270
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FatI CATG 1 cut(s) 268
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 123, 325
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 123, 325
GluI GCNGC 2 cut(s) 123, 325
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 4 cut(s) 91, 166, 203, 414
HapII CCGG 1 cut(s) 135
HgaI GACGC 2 cut(s) 62, 127
Hin1I GRCGYC 2 cut(s) 105, 138
Hin1II CATG 1 cut(s) 272
HpaII CCGG 1 cut(s) 135
HphI GGTGA 4 cut(s) 161, 289, 298, 419
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 4 cut(s) 103, 199, 337, 357
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 4 cut(s) 107, 110, 143, 396
HpyAV CCTTC 2 cut(s) 63, 404
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 2 cut(s) 105, 232
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 191, 200, 264
HpyF3I CTNAG 3 cut(s) 336, 345, 356
HpySE526I ACGT 2 cut(s) 105, 232
Hsp92I GRCGYC 2 cut(s) 105, 138
Hsp92II CATG 1 cut(s) 272
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 2 cut(s) 312, 373
LmnI GCTCC 2 cut(s) 33, 440
LpnPI CCDG 6 cut(s) 148, 195, 292, 402, 426, 429
Lsp1109I GCAGC 2 cut(s) 109, 311
LweI GCATC 1 cut(s) 203
MaeII ACGT 2 cut(s) 105, 232
MalI GATC 2 cut(s) 314, 375
MboI GATC 2 cut(s) 312, 373
MboII GAAGA 8 cut(s) 51, 75, 87, 170, 180, 235, 322, 380
MhlI GDGCHC 2 cut(s) 119, 168
MluCI AATT 2 cut(s) 45, 317
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 5 cut(s) 109, 140, 193, 266, 373
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 2 cut(s) 17, 291
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 4 cut(s) 131, 191, 200, 264
NaeI GCCGGC 1 cut(s) 136
NcoI CCATGG 1 cut(s) 268
NdeII GATC 2 cut(s) 312, 373
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 166, 436
PasI CCCWGGG 1 cut(s) 416
PdiI GCCGGC 1 cut(s) 136
PkrI GCNGC 2 cut(s) 124, 326
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 415
PspCI CACGTG 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 166, 436
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 164, 165, 413
PvuII CAGCTG 1 cut(s) 344
SaqAI TTAA 2 cut(s) 17, 291
SatI GCNGC 2 cut(s) 123, 325
Sau3AI GATC 2 cut(s) 312, 373
Sau96I GGNCC 3 cut(s) 164, 165, 413
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 2 cut(s) 119, 168
SetI ASST 7 cut(s) 17, 43, 108, 132, 187, 235, 346
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 329
SgrAI CRCCGGYG 1 cut(s) 134
Sse9I AATT 2 cut(s) 45, 317
StyD4I CCNGG 1 cut(s) 415
StyI CCWWGG 2 cut(s) 268, 430
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 2 cut(s) 108, 235
TaqI TCGA 4 cut(s) 113, 246, 376, 394
TasI AATT 2 cut(s) 45, 317
Tru1I TTAA 2 cut(s) 17, 291
Tru9I TTAA 2 cut(s) 17, 291
TscAI CASTG 1 cut(s) 445
TseI GCWGC 2 cut(s) 122, 324
TspDTI ATGAA 2 cut(s) 51, 171
TspRI CASTG 1 cut(s) 445
XapI RAATTY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 437
XmiI GTMKAC 1 cut(s) 171
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.