AT1G24130

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015016
Physical Location & Seq
Reverse (-)
8534146 .. 8535660
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24130.1

Sequence Viewer

Length: 1248 bp
ATGGGTTTGCTTCCGTGTTCTTGTCCTCTGCCTTGCAATGAAACAAGATCAGAATGTGAAACGAAATCGACGCATCACCAATCAGAATCCTCAACGTCATCATCGCTTTTGTCTCAGCCAAGTCTTCCATTGGTTCCTTCGCTGTCTTTTCAGCATCAGAGCTCCAGCGTCGATCACCATTGCTTAGCCACGCTCAAAGATAAATCCTCGTACGTATCTTCTCTCGCTGTCTCAGATAAATTACTCTACACTGGCTCTTCCAACAGTGAGATACGTGTATGGCCTCGTGAACCTCCGTTCTCACCGGAATATTCCACCGGCGATGACCGTAACGTAGTTGCCAACGGAAACGGAGGGGTTAAATCGTTGGTGATTCTTGGCGACAAGCTAATAAGTGCTCATCAAGATCACAAGATTCGTGTATGGAAGATCATCGACGAGAGCAATCGCAGAGGTCAGAAGTACAAGTGCGTAGCTACTCTTCCGACGATGAACGACCGCTTCAAGACTCTCTTTAGTAGCAAAAGCTACGTGGAAGTCCGACGGCACAAGAAGTGCACGTGGGTTCACCATGTGGACGCCGTGTCATCACTAGCCTTGTCGCAAGATGGCTCTCTGCTTTACTCTGCTTCGTGGGACCGGAGTTTCAAGATATGGAGAACATCTGATTTCAAATGCTTGGACTCTATCGAAAAGGCTCACGATGATGCTATTAACGCCATCGTAGTGTCCAAAGACGGTTTTGTGTACACGGGTTCGGCAGATAAGAAGATCAAAGTGTGGAACAAGAAGGACAAGAAACACTCTCTGGTCGCTACACTGACTAAACATCTCTCGGCAGTGAACGCGTTGGCTATTAGTGAAGACGGGAAGGTTCTTTACTCCGGTGCGTGTGATAGATCGATTCTTGTGTGGGAGAGATTGATTAATGGAGATGATGAGGAGTTACATATGTCTGTAGTGGGAGCTTTAAGGGGACACAGGAAGGCGATTATGTGTTTAGCAGTTGCGTCTGATTTGGTGTTGAGTGGGTCAGCGGATAAGAGCTTGAGGGTTTGGAGGAGAGGATTAATGGAGAAAGAGGGTTATTCTTGTTTGGCGGTTCTGGAAGGACATACCAAGCCTGTTAAGTCTTTGGCTGTTTCAGTTTCTGATTCCGATTCTAATTCTGATTATTCTTGTATGGTTTATAGTGGGAGTCTTGATCTTTCTCTTAAAGTTTGGAACTTAAGGGTTTCATCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04934 map04934
Pfam Domains
Protein Families
WD40

Protein Analysis

415

Amino Acids

45.8

Weight (kDa)

8.69

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_SCAP PF24017 25 - 307 6.4e-08 SCAP Beta-propeller
Beta-prop_WDR5 PF25175 66 - 230 6.8e-09 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 78 - 306 2.4e-19 THOC3 beta-propeller domain
WD40_Prp19 PF24814 128 - 306 4e-14 Prp19 WD40 domain
WD40_MABP1-WDR62_2nd PF24782 129 - 353 4.1e-09 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 172 - 288 7.1e-07 TEP-1 second beta-propeller
WDR55 PF24796 181 - 305 2.1e-15 WDR55
Beta-prop_EML_2 PF23414 183 - 306 3.8e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 183 - 306 2.4e-15 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 184 - 353 2.8e-14 G protein beta WD-40 repeat protein
WD40 PF00400 187 - 219 1.7e-06 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 187 - 307 2.6e-14 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 190 - 306 1e-20 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 190 - 354 1.2e-13 WDHD1 first WD40 domain
Beta-prop_EML PF23409 191 - 303 4.1e-08 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd PF25172 194 - 307 2.6e-17 WDR3 second beta-propeller domain
NBCH_WD40 PF20426 197 - 266 4.7e-06 Neurobeachin beta propeller domain
Beta-prop_SCAP PF24017 229 - 356 1.4e-06 SCAP Beta-propeller
Beta-prop_WDR5 PF25175 232 - 411 2.5e-23 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 248 - 383 7.5e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 251 - 353 6.7e-09 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 270 - 305 1.1e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 277 - 353 8e-09 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 291 - 412 5.1e-09 TEP-1 second beta-propeller
WD40_Prp19 PF24814 319 - 382 7.3e-07 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 321 - 412 5.3e-09 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015016)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24130
fragaria_vesca FvH4_4g35150
malus_domestica MD13G1085800.v1.1 MD16G1085100.v1.1
prunus_persica Prupe.1G260900_v2.0.a1
pyrus_communis pycom13g07420 pycom16g07360
rosa_chinensis RchiOBHm_Chr4g0444751
rosa_laevigata RLG00000005805
rosa_multiflora Rmu_sc0000096.1_g000011
rosa_roxburghii Rroxscaffold_5G00385270
rosa_samantha Rh4AG415800 Rh4BG427100 Rh4CG442000 Rh4DG423100
rosa_wichuraiana Rw4G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 848
AciI CCGC 3 cut(s) 499, 1037, 1100
AcvI CACGTG 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 574
AfaI GTAC 3 cut(s) 212, 464, 749
AflII CTTAAG 1 cut(s) 1228
AflIII ACRYGT 2 cut(s) 274, 846
AgsI TTSAA 3 cut(s) 505, 649, 673
AhdI GACNNNNNGTC 1 cut(s) 583
AluBI AGCT 6 cut(s) 162, 388, 476, 528, 968, 1047
AluI AGCT 6 cut(s) 162, 388, 476, 528, 968, 1047
Alw21I GWGCWC 3 cut(s) 164, 400, 560
Alw26I GTCTC 2 cut(s) 117, 235
Alw44I GTGCAC 1 cut(s) 556
AlwNI CAGNNNCTG 1 cut(s) 1151
AoxI GGCC 1 cut(s) 281
ApaLI GTGCAC 1 cut(s) 556
AseI ATTAAT 2 cut(s) 927, 1070
AspS9I GGNCC 1 cut(s) 637
AsuHPI GGTGA 5 cut(s) 68, 167, 294, 382, 560
AvaII GGWCC 1 cut(s) 637
BaeGI GKGCMC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 164
BarI GAAGNNNNNNTAC 4 cut(s) 465, 497, 863, 895
BauI CACGAG 1 cut(s) 285
BbrPI CACGTG 1 cut(s) 561
BbsI GAAGAC 2 cut(s) 116, 870
Bbv12I GWGCWC 3 cut(s) 164, 400, 560
BccI CCATC 2 cut(s) 602, 728
BceAI ACGGC 2 cut(s) 560, 566
BcoDI GTCTC 2 cut(s) 117, 235
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 957
BfrI CTTAAG 1 cut(s) 1228
BlpI GCTNAGC 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 637
BmeRI GACNNNNNGTC 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 637
BmiI GGNNCC 2 cut(s) 135, 638
BmsI GCATC 3 cut(s) 82, 163, 697
BpiI GAAGAC 2 cut(s) 116, 870
BpmI CTGGAG 1 cut(s) 148
Bpu1102I GCTNAGC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 1069
Bsa29I ATCGAT 1 cut(s) 902
BsaAI YACGTR 4 cut(s) 214, 275, 532, 561
BsaHI GRCGYC 1 cut(s) 579
BsaWI WCCGGW 3 cut(s) 304, 639, 884
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 2 cut(s) 43, 178
BseCI ATCGAT 1 cut(s) 902
BseMI GCAATG 2 cut(s) 43, 178
BseMII CTCAG 2 cut(s) 128, 246
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 2 cut(s) 956, 1075
BseSI GKGCMC 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 848
Bsh1285I CGRYCG 1 cut(s) 499
BshFI GGCC 1 cut(s) 283
BshVI ATCGAT 1 cut(s) 902
BsiEI CGRYCG 1 cut(s) 499
BsiHKAI GWGCWC 3 cut(s) 164, 400, 560
BsiSI CCGG 4 cut(s) 305, 318, 640, 885
BsiWI CGTACG 1 cut(s) 210
BslFI GGGAC 2 cut(s) 650, 990
BsmAI GTCTC 2 cut(s) 117, 235
BsmFI GGGAC 2 cut(s) 650, 990
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 3 cut(s) 164, 400, 560
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 7 cut(s) 47, 172, 406, 429, 771, 899, 1204
Bsp1720I GCTNAGC 1 cut(s) 184
BspACI CCGC 3 cut(s) 499, 1037, 1100
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 127, 245
BspDI ATCGAT 1 cut(s) 902
BspFNI CGCG 1 cut(s) 848
BspLI GGNNCC 2 cut(s) 135, 638
BspQI GCTCTTC 1 cut(s) 262
BspTI CTTAAG 1 cut(s) 1228
BsrDI GCAATG 2 cut(s) 43, 178
BsrFI RCCGGY 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 317
BssMI GATC 7 cut(s) 47, 172, 406, 429, 771, 899, 1204
BssNI GRCGYC 1 cut(s) 579
BssSI CACGAG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 266, 329, 740
Bst6I CTCTTC 2 cut(s) 262, 486
BstACI GRCGYC 1 cut(s) 579
BstAFI CTTAAG 1 cut(s) 1228
BstAUI TGTACA 1 cut(s) 747
BstBAI YACGTR 4 cut(s) 214, 275, 532, 561
BstDEI CTNAG 3 cut(s) 114, 184, 232
BstFNI CGCG 1 cut(s) 848
BstKTI GATC 7 cut(s) 50, 175, 409, 432, 774, 902, 1207
BstMAI GTCTC 2 cut(s) 117, 235
BstMBI GATC 7 cut(s) 47, 172, 406, 429, 771, 899, 1204
BstMCI CGRYCG 1 cut(s) 499
BstMWI GCNNNNNNNGC 2 cut(s) 716, 845
BstSFI CTRYAG 1 cut(s) 957
BstSLI GKGCMC 1 cut(s) 560
BstSNI TACGTA 1 cut(s) 214
BstUI CGCG 1 cut(s) 848
BstV2I GAAGAC 2 cut(s) 116, 870
Bsu15I ATCGAT 1 cut(s) 902
BsuRI GGCC 1 cut(s) 283
BsuTUI ATCGAT 1 cut(s) 902
BtgZI GCGATG 2 cut(s) 87, 336
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 4 cut(s) 249, 271, 818, 846
CaiI CAGNNNCTG 1 cut(s) 1151
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 637
ClaI ATCGAT 1 cut(s) 902
CseI GACGC 4 cut(s) 79, 157, 587, 999
Csp6I GTAC 3 cut(s) 211, 463, 748
CviAII CATG 1 cut(s) 572
CviQI GTAC 3 cut(s) 211, 463, 748
DdeI CTNAG 3 cut(s) 114, 184, 232
DpnI GATC 7 cut(s) 49, 174, 408, 431, 773, 901, 1206
DpnII GATC 7 cut(s) 47, 172, 406, 429, 771, 899, 1204
DraIII CACNNNGTG 1 cut(s) 574
DriI GACNNNNNGTC 1 cut(s) 583
Eam1104I CTCTTC 2 cut(s) 262, 486
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 2 cut(s) 262, 486
Ecl136II GAGCTC 1 cut(s) 162
Eco105I TACGTA 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 162
Eco72I CACGTG 1 cut(s) 561
EcoICRI GAGCTC 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 1 cut(s) 575
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 2 cut(s) 650, 990
FatI CATG 1 cut(s) 571
FauNDI CATATG 1 cut(s) 951
FriOI GRGCYC 1 cut(s) 164
FspBI CTAG 1 cut(s) 593
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 1 cut(s) 283
HapII CCGG 4 cut(s) 305, 318, 640, 885
HgaI GACGC 4 cut(s) 79, 157, 587, 999
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 1 cut(s) 575
HinfI GANTC 9 cut(s) 86, 373, 415, 508, 683, 904, 1154, 1160, 1198
HpaII CCGG 4 cut(s) 305, 318, 640, 885
HphI GGTGA 5 cut(s) 68, 167, 294, 382, 560
Hpy166II GTNNAC 7 cut(s) 290, 558, 568, 577, 748, 750, 844
Hpy188III TCNNGA 7 cut(s) 287, 404, 505, 649, 701, 1106, 1202
Hpy8I GTNNAC 7 cut(s) 290, 558, 568, 577, 748, 750, 844
Hpy99I CGWCG 5 cut(s) 73, 173, 440, 490, 546
HpyAV CCTTC 5 cut(s) 147, 784, 865, 979, 1103
HpyCH4III ACNGT 3 cut(s) 266, 329, 740
HpyCH4IV ACGT 6 cut(s) 95, 213, 274, 333, 531, 560
HpyCH4V TGCA 2 cut(s) 36, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 716, 845
HpyF3I CTNAG 3 cut(s) 114, 184, 232
HpySE526I ACGT 6 cut(s) 95, 213, 274, 333, 531, 560
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 1 cut(s) 575
Kzo9I GATC 7 cut(s) 47, 172, 406, 429, 771, 899, 1204
LguI GCTCTTC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 167, 965
LweI GCATC 3 cut(s) 82, 163, 697
MaeI CTAG 1 cut(s) 593
MaeII ACGT 6 cut(s) 95, 213, 274, 333, 531, 560
MaeIII GTNAC 2 cut(s) 329, 945
MalI GATC 7 cut(s) 49, 174, 408, 431, 773, 901, 1206
MboI GATC 7 cut(s) 47, 172, 406, 429, 771, 899, 1204
MboII GAAGA 7 cut(s) 116, 210, 249, 439, 473, 781, 875
MhlI GDGCHC 3 cut(s) 164, 400, 560
MluCI AATT 2 cut(s) 239, 1165
MluI ACGCGT 1 cut(s) 846
MlyI GAGTC 3 cut(s) 502, 677, 1207
MmeI TCCRAC 3 cut(s) 285, 509, 565
MseI TTAA 8 cut(s) 360, 714, 927, 971, 1070, 1128, 1215, 1229
MslI CAYNNNNRTG 2 cut(s) 705, 725
MspA1I CMGCKG 1 cut(s) 1037
MspCI CTTAAG 1 cut(s) 1228
MspI CCGG 4 cut(s) 305, 318, 640, 885
MvnI CGCG 1 cut(s) 848
MwoI GCNNNNNNNGC 2 cut(s) 716, 845
NdeI CATATG 1 cut(s) 951
NdeII GATC 7 cut(s) 47, 172, 406, 429, 771, 899, 1204
NlaIII CATG 1 cut(s) 575
NlaIV GGNNCC 2 cut(s) 135, 638
NmeAIII GCCGAG 1 cut(s) 815
PciSI GCTCTTC 1 cut(s) 262
PfeI GAWTC 6 cut(s) 86, 373, 415, 904, 1154, 1160
Pfl23II CGTACG 1 cut(s) 210
PleI GAGTC 3 cut(s) 502, 677, 1206
PmaCI CACGTG 1 cut(s) 561
PmlI CACGTG 1 cut(s) 561
PpsI GAGTC 3 cut(s) 502, 677, 1206
Ppu21I YACGTR 4 cut(s) 214, 275, 532, 561
PshBI ATTAAT 2 cut(s) 927, 1070
Psp124BI GAGCTC 1 cut(s) 164
PspCI CACGTG 1 cut(s) 561
PspLI CGTACG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 135, 638
PspPI GGNCC 1 cut(s) 637
PstNI CAGNNNCTG 1 cut(s) 1151
RsaI GTAC 3 cut(s) 212, 464, 749
RsaNI GTAC 3 cut(s) 211, 463, 748
RseI CAYNNNNRTG 2 cut(s) 705, 725
SacI GAGCTC 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 262
SaqAI TTAA 8 cut(s) 360, 714, 927, 971, 1070, 1128, 1215, 1229
Sau3AI GATC 7 cut(s) 47, 172, 406, 429, 771, 899, 1204
Sau96I GGNCC 1 cut(s) 637
SchI GAGTC 3 cut(s) 502, 677, 1207
SduI GDGCHC 3 cut(s) 164, 400, 560
SfaNI GCATC 3 cut(s) 82, 163, 697
SfcI CTRYAG 1 cut(s) 957
SgrAI CRCCGGYG 1 cut(s) 317
SinI GGWCC 1 cut(s) 637
SmiMI CAYNNNNRTG 2 cut(s) 705, 725
SmlI CTYRAG 2 cut(s) 1048, 1228
SmoI CTYRAG 2 cut(s) 1048, 1228
SnaBI TACGTA 1 cut(s) 214
Sse9I AATT 2 cut(s) 239, 1165
SsiI CCGC 3 cut(s) 499, 1037, 1100
SspI AATATT 1 cut(s) 311
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 164
TaaI ACNGT 3 cut(s) 266, 329, 740
TaiI ACGT 6 cut(s) 98, 216, 277, 336, 534, 563
TaqI TCGA 5 cut(s) 68, 171, 435, 690, 902
TasI AATT 2 cut(s) 239, 1165
TatI WGTACW 2 cut(s) 462, 747
TfiI GAWTC 6 cut(s) 86, 373, 415, 904, 1154, 1160
Tru1I TTAA 8 cut(s) 360, 714, 927, 971, 1070, 1128, 1215, 1229
Tru9I TTAA 8 cut(s) 360, 714, 927, 971, 1070, 1128, 1215, 1229
TscAI CASTG 4 cut(s) 256, 271, 825, 846
TspDTI ATGAA 3 cut(s) 54, 506, 1227
TspGWI ACGGA 3 cut(s) 285, 360, 366
TspRI CASTG 4 cut(s) 256, 271, 825, 846
Vha464I CTTAAG 1 cut(s) 1228
VneI GTGCAC 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 637
VspI ATTAAT 2 cut(s) 927, 1070
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.