Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000096.1

Orthogroup ID

OG0015016

Physical Location & Seq

Genomic Coordinates Reverse (-)

46737 .. 47978

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000096.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgggacttgttccatgtcctttgccctgccgcacatacagtacagaatccgagtccaactccagttaccaccttcactctgatccttcaacctcctcaatatcttcccaaccaagtcttccttctgttccttcgctatcacggcaagtactacagcaaacccaaaccacccaacttaactgcatagctacccgaaaatccggctccgcctgtgtctgttccctagtcctcgccggaaagttcctatacaccggctcatccgacggcgagattcgatcatggagctgcagagacatctccgcaaacacttccaagccactagaaaccaccaactccacggtcaagtctctagtgattgtgggcgacaaaatcttcagcgctcaccaagaccacaaaatccgtgtttggcaagtcaacactaccaatgaacaaaagttcaaatgcaaatgcatagcaacgctgccgacactgaaagatcgtttccctaggctcttcttccccaacagttacgtccaagtccggcggcacaagaaattaacgtgggtgcatcatgcggacgcaatatcagctctggcggtatcaaaggacgagtctcttctatactcggcttcatgggaccgcacgttcaaaatctggcggacctccgacttcaagtgcttggagtcggtgagcaacgcccacgaggatgccataaacgcaatagtggtgagcaatgacgggtttgtttacactggctcggcggataagaagataaaggtgtggaagaaactcattggggaaaagcatcacactcttgctgagtcactagagaagcacaagtcggcggtgaacgccttggcttttagctccgacgggtctgtgttgtactccggcgcgtgtgatcggtcgattctggtttgggaaagagataatggtggcggtggtgggatggttgtggtgggggcgcttagaggtcacactaaggctatattgtgtttggcggtggcggggaatttagtgtgtagtggttcggcggattgtagtgttaggatttggaggagaggggttggtgatgatcggagttactcgtgtttgggtgtgttggaaggtcataggcggccggtgaagtgtttgacggcggccgtggattttgacggtgacgatagaagtgattatgttaattcttttgttgtttatagtggtagtttggattgtaacattaaggtgtggcaaatacaggtccctttggttaattcgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

413

Amino Acids

45.24

Weight (kDa)

8.85

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24130
fragaria_vesca	FvH4_4g35150
malus_domestica	MD13G1085800.v1.1 MD16G1085100.v1.1
prunus_persica	Prupe.1G260900_v2.0.a1
pyrus_communis	pycom13g07420 pycom16g07360
rosa_chinensis	RchiOBHm_Chr4g0444751
rosa_laevigata	RLG00000005805
rosa_multiflora	Rmu_sc0000096.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385270
rosa_samantha	Rh4AG415800 Rh4BG427100 Rh4CG442000 Rh4DG423100
rosa_wichuraiana	Rw4G035680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	875
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	2 cut(s)	1097, 1119
AcsI	RAATTY	1 cut(s)	991
AcuI	CTGAAG	1 cut(s)	358
AfaI	GTAC	3 cut(s)	43, 150, 866
AfeI	AGCGCT	1 cut(s)	379
AgsI	TTSAA	4 cut(s)	90, 439, 628, 652
AjuI	GAANNNNNNNTTGG	4 cut(s)	102, 106, 134, 138
AloI	GAACNNNNNNTCC	2 cut(s)	608, 640
AluBI	AGCT	4 cut(s)	188, 285, 569, 846
AluI	AGCT	4 cut(s)	188, 285, 569, 846
Alw26I	GTCTC	3 cut(s)	285, 351, 597
AlwI	GGATC	1 cut(s)	77
Aor51HI	AGCGCT	1 cut(s)	379
AoxI	GGCC	2 cut(s)	1097, 1119
ApeKI	GCWGC	2 cut(s)	285, 460
ApoI	RAATTY	1 cut(s)	991
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AspA2I	CCTAGG	1 cut(s)	485
AspLEI	GCGC	3 cut(s)	380, 875, 946
AspS9I	GGNCC	3 cut(s)	616, 639, 1219
AsuHPI	GGTGA	7 cut(s)	374, 679, 718, 838, 1061, 1114, 1148
AvaII	GGWCC	3 cut(s)	616, 639, 1219
AvrII	CCTAGG	1 cut(s)	485
BauI	CACGAG	2 cut(s)	680, 1066
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	272, 447
BccI	CCATC	1 cut(s)	922
BceAI	ACGGC	4 cut(s)	158, 280, 1106, 1131
BcoDI	GTCTC	3 cut(s)	285, 351, 597
BfaI	CTAG	5 cut(s)	224, 320, 350, 486, 806
BfmI	CTRYAG	2 cut(s)	152, 286
BfoI	RGCGCY	2 cut(s)	381, 947
BisI	GCNGC	6 cut(s)	31, 286, 461, 524, 1097, 1119
BlnI	CCTAGG	1 cut(s)	485
BlsI	GCNGC	6 cut(s)	32, 287, 462, 525, 1098, 1120
BmcAI	AGTACT	1 cut(s)	150
Bme18I	GGWCC	3 cut(s)	616, 639, 1219
BmgT120I	GGNCC	3 cut(s)	616, 639, 1219
BmiI	GGNNCC	3 cut(s)	205, 617, 1221
BmsI	GCATC	3 cut(s)	556, 676, 793
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	1 cut(s)	46
BsaJI	CCNNGG	4 cut(s)	336, 485, 834, 1122
Bse118I	RCCGGY	2 cut(s)	251, 1099
Bse1I	ACTGG	2 cut(s)	63, 736
Bse3DI	GCAATG	1 cut(s)	718
BseDI	CCNNGG	4 cut(s)	336, 485, 834, 1122
BseGI	GGATG	3 cut(s)	257, 691, 933
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	2 cut(s)	63, 736
BseRI	GAGGAG	2 cut(s)	85, 1051
BseX3I	CGGCCG	2 cut(s)	1097, 1119
BseXI	GCAGC	2 cut(s)	272, 447
Bsh1236I	CGCG	1 cut(s)	875
Bsh1285I	CGRYCG	3 cut(s)	887, 1100, 1122
BshFI	GGCC	2 cut(s)	1099, 1121
BsiEI	CGRYCG	3 cut(s)	887, 1100, 1122
BsiSI	CCGG	6 cut(s)	201, 234, 252, 520, 870, 1100
BslFI	GGGAC	3 cut(s)	18, 629, 1205
BsmAI	GTCTC	3 cut(s)	285, 351, 597
BsmFI	GGGAC	3 cut(s)	18, 629, 1205
BsnI	GGCC	2 cut(s)	1099, 1121
Bsp143I	GATC	5 cut(s)	82, 275, 475, 880, 1054
BspANI	GGCC	2 cut(s)	1099, 1121
BspCNI	CTCAG	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	875
BspLI	GGNNCC	3 cut(s)	205, 617, 1221
BspMAI	CTGCAG	1 cut(s)	290
BspPI	GGATC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	718
BsrFI	RCCGGY	2 cut(s)	251, 1099
BsrI	ACTGG	2 cut(s)	63, 736
BssAI	RCCGGY	2 cut(s)	251, 1099
BssECI	CCNNGG	4 cut(s)	336, 485, 834, 1122
BssMI	GATC	5 cut(s)	82, 275, 475, 880, 1054
BssSI	CACGAG	2 cut(s)	680, 1066
BssT1I	CCWWGG	2 cut(s)	485, 834
Bst2BI	CACGAG	2 cut(s)	680, 1066
Bst4CI	ACNGT	4 cut(s)	41, 340, 506, 1136
Bst6I	CTCTTC	2 cut(s)	497, 600
BstDEI	CTNAG	3 cut(s)	798, 947, 960
BstDSI	CCRYGG	2 cut(s)	336, 1122
BstF5I	GGATG	3 cut(s)	257, 691, 933
BstFNI	CGCG	1 cut(s)	875
BstH2I	RGCGCY	2 cut(s)	381, 947
BstHHI	GCGC	3 cut(s)	380, 875, 946
BstKTI	GATC	5 cut(s)	85, 278, 478, 883, 1057
BstMAI	GTCTC	3 cut(s)	285, 351, 597
BstMBI	GATC	5 cut(s)	82, 275, 475, 880, 1054
BstMCI	CGRYCG	3 cut(s)	887, 1100, 1122
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 566, 695, 830
BstSFI	CTRYAG	2 cut(s)	152, 286
BstUI	CGCG	1 cut(s)	875
BstV1I	GCAGC	2 cut(s)	272, 447
BstV2I	GAAGAC	1 cut(s)	110
BstZI	CGGCCG	2 cut(s)	1097, 1119
BsuRI	GGCC	2 cut(s)	1099, 1121
BtgI	CCRYGG	2 cut(s)	336, 1122
BtsCI	GGATG	3 cut(s)	257, 691, 933
BtsIMutI	CAGTG	2 cut(s)	467, 729
CfoI	GCGC	3 cut(s)	380, 875, 946
Cfr10I	RCCGGY	2 cut(s)	251, 1099
Cfr13I	GGNCC	3 cut(s)	616, 639, 1219
CseI	GACGC	1 cut(s)	566
Csp6I	GTAC	3 cut(s)	42, 149, 865
CviAII	CATG	4 cut(s)	15, 279, 551, 612
CviQI	GTAC	3 cut(s)	42, 149, 865
DdeI	CTNAG	3 cut(s)	798, 947, 960
DpnI	GATC	5 cut(s)	84, 277, 477, 882, 1056
DpnII	GATC	5 cut(s)	82, 275, 475, 880, 1054
EaeI	YGGCCR	2 cut(s)	1097, 1119
EagI	CGGCCG	2 cut(s)	1097, 1119
Eam1104I	CTCTTC	2 cut(s)	497, 600
EarI	CTCTTC	2 cut(s)	497, 600
EciI	GGCGGA	4 cut(s)	196, 652, 755, 1028
EclXI	CGGCCG	2 cut(s)	1097, 1119
Eco130I	CCWWGG	2 cut(s)	485, 834
Eco47I	GGWCC	3 cut(s)	616, 639, 1219
Eco47III	AGCGCT	1 cut(s)	379
Eco52I	CGGCCG	2 cut(s)	1097, 1119
Eco57I	CTGAAG	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	1219
EcoT14I	CCWWGG	2 cut(s)	485, 834
EcoT22I	ATGCAT	1 cut(s)	452
ErhI	CCWWGG	2 cut(s)	485, 834
FaeI	CATG	4 cut(s)	18, 282, 554, 615
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FaqI	GGGAC	3 cut(s)	18, 629, 1205
FatI	CATG	4 cut(s)	14, 278, 550, 611
FauI	CCCGC	1 cut(s)	979
Fnu4HI	GCNGC	6 cut(s)	31, 286, 461, 524, 1097, 1119
FokI	GGATG	3 cut(s)	244, 698, 940
Fsp4HI	GCNGC	6 cut(s)	31, 286, 461, 524, 1097, 1119
FspBI	CTAG	5 cut(s)	224, 320, 350, 486, 806
GlaI	GCGC	3 cut(s)	379, 874, 945
GluI	GCNGC	6 cut(s)	31, 286, 461, 524, 1097, 1119
GsuI	CTGGAG	1 cut(s)	46
HaeII	RGCGCY	2 cut(s)	381, 947
HaeIII	GGCC	2 cut(s)	1099, 1121
HapII	CCGG	6 cut(s)	201, 234, 252, 520, 870, 1100
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	3 cut(s)	380, 875, 946
Hin1II	CATG	4 cut(s)	18, 282, 554, 615
Hin6I	GCGC	3 cut(s)	378, 873, 944
HinP1I	GCGC	3 cut(s)	378, 873, 944
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	7 cut(s)	47, 53, 271, 590, 662, 800, 889
HpaII	CCGG	6 cut(s)	201, 234, 252, 520, 870, 1100
HphI	GGTGA	7 cut(s)	374, 679, 718, 838, 1061, 1114, 1148
Hpy166II	GTNNAC	3 cut(s)	415, 727, 829
Hpy188I	TCNGA	6 cut(s)	52, 82, 262, 646, 850, 1059
Hpy8I	GTNNAC	3 cut(s)	415, 727, 829
Hpy99I	CGWCG	2 cut(s)	266, 854
HpyAV	CCTTC	5 cut(s)	83, 96, 132, 141, 1079
HpyCH4III	ACNGT	4 cut(s)	41, 340, 506, 1136
HpyCH4IV	ACGT	3 cut(s)	510, 539, 623
HpyCH4V	TGCA	5 cut(s)	183, 288, 444, 450, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 566, 695, 830
HpyF3I	CTNAG	3 cut(s)	798, 947, 960
HpySE526I	ACGT	3 cut(s)	510, 539, 623
Hsp92II	CATG	4 cut(s)	18, 282, 554, 615
HspAI	GCGC	3 cut(s)	378, 873, 944
Kzo9I	GATC	5 cut(s)	82, 275, 475, 880, 1054
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	3 cut(s)	209, 282, 851
Lsp1109I	GCAGC	2 cut(s)	272, 447
LweI	GCATC	3 cut(s)	556, 676, 793
MaeI	CTAG	5 cut(s)	224, 320, 350, 486, 806
MaeII	ACGT	3 cut(s)	510, 539, 623
MaeIII	GTNAC	7 cut(s)	65, 506, 801, 953, 1061, 1136, 1193
MalI	GATC	5 cut(s)	84, 277, 477, 882, 1056
MboI	GATC	5 cut(s)	82, 275, 475, 880, 1054
MboII	GAAGA	8 cut(s)	96, 110, 364, 484, 487, 587, 760, 775
MluCI	AATT	4 cut(s)	533, 991, 1159, 1231
MlyI	GAGTC	4 cut(s)	62, 599, 671, 809
MmeI	TCCRAC	5 cut(s)	81, 285, 669, 873, 1062
MnlI	CCTC	8 cut(s)	103, 106, 239, 652, 676, 944, 1029, 1034
Mph1103I	ATGCAT	1 cut(s)	452
MseI	TTAA	6 cut(s)	177, 536, 1158, 1200, 1230, 1240
MslI	CAYNNNNRTG	2 cut(s)	684, 1202
MspI	CCGG	6 cut(s)	201, 234, 252, 520, 870, 1100
MvnI	CGCG	1 cut(s)	875
MwoI	GCNNNNNNNGC	4 cut(s)	142, 566, 695, 830
NdeII	GATC	5 cut(s)	82, 275, 475, 880, 1054
NlaIII	CATG	4 cut(s)	18, 282, 554, 615
NlaIV	GGNNCC	3 cut(s)	205, 617, 1221
NmeAIII	GCCGAG	2 cut(s)	584, 716
NmuCI	GTSAC	3 cut(s)	801, 953, 1136
NsiI	ATGCAT	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	47, 271, 889
PkrI	GCNGC	6 cut(s)	32, 287, 462, 525, 1098, 1120
PleI	GAGTC	4 cut(s)	61, 598, 670, 808
PpsI	GAGTC	4 cut(s)	61, 598, 670, 808
PpuMI	RGGWCCY	1 cut(s)	1219
Psp5II	RGGWCCY	1 cut(s)	1219
PspN4I	GGNNCC	3 cut(s)	205, 617, 1221
PspPI	GGNCC	3 cut(s)	616, 639, 1219
PspPPI	RGGWCCY	1 cut(s)	1219
PstI	CTGCAG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	43, 150, 866
RsaNI	GTAC	3 cut(s)	42, 149, 865
RseI	CAYNNNNRTG	2 cut(s)	684, 1202
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	6 cut(s)	177, 536, 1158, 1200, 1230, 1240
SatI	GCNGC	6 cut(s)	31, 286, 461, 524, 1097, 1119
Sau3AI	GATC	5 cut(s)	82, 275, 475, 880, 1054
Sau96I	GGNCC	3 cut(s)	616, 639, 1219
ScaI	AGTACT	1 cut(s)	150
SchI	GAGTC	4 cut(s)	62, 599, 671, 809
SfaNI	GCATC	3 cut(s)	556, 676, 793
SfcI	CTRYAG	2 cut(s)	152, 286
SinI	GGWCC	3 cut(s)	616, 639, 1219
SmiMI	CAYNNNNRTG	2 cut(s)	684, 1202
Sse9I	AATT	4 cut(s)	533, 991, 1159, 1231
SspMI	CTAG	5 cut(s)	224, 320, 350, 486, 806
StyI	CCWWGG	2 cut(s)	485, 834
TaaI	ACNGT	4 cut(s)	41, 340, 506, 1136
TaiI	ACGT	3 cut(s)	513, 542, 626
TaqI	TCGA	3 cut(s)	274, 887, 1235
TaqII	GACCGA	1 cut(s)	873
TasI	AATT	4 cut(s)	533, 991, 1159, 1231
TatI	WGTACW	3 cut(s)	41, 148, 864
TauI	GCSGC	4 cut(s)	33, 526, 1099, 1121
TfiI	GAWTC	3 cut(s)	47, 271, 889
Tru1I	TTAA	6 cut(s)	177, 536, 1158, 1200, 1230, 1240
Tru9I	TTAA	6 cut(s)	177, 536, 1158, 1200, 1230, 1240
TscAI	CASTG	2 cut(s)	474, 736
TseFI	GTSAC	3 cut(s)	801, 953, 1136
TseI	GCWGC	2 cut(s)	285, 460
Tsp45I	GTSAC	3 cut(s)	801, 953, 1136
TspDTI	ATGAA	2 cut(s)	441, 600
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	474, 736
VpaK11BI	GGWCC	3 cut(s)	616, 639, 1219
XapI	RAATTY	1 cut(s)	991
XmaJI	CCTAGG	1 cut(s)	485
XspI	CTAG	5 cut(s)	224, 320, 350, 486, 806
ZrmI	AGTACT	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.