Rh4CG442000

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015016
Physical Location & Seq
Reverse (-)
67874631 .. 67876438
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG442000.1

Sequence Viewer

Length: 1242 bp
ATGGGACTTGTTCCATGTCCTTTGCCCTGCCGCACATACAGTACAGAATCCGAGTCCAACTCCAGTTACCACCTTCACTCTGATCCTTCAACCTCCTCAATATCTTCCCAACCAAGTCTTCCTTCTGTTCCTTCGCTATCACGGCAAGTACTACAGCAAACCCAAACCACCCAACTTAACTGCATAGCTACCCGAAAATCCGGCTCCGCCTGTGTCTGTTCCCTAGTCCTCGCCGGAAAGTTCCTATACACCGGCTTATCCGACGGCGAGATTCGATCATGGAGCTGCAGAGACATCTCCTCGAACACTTCCAAGCCACTAGCCACCACCAACTCCACGGTCAAGTCTCTAGTGATTGTGGGCGACAAAATCTTCAGCGCTCACCAAGACCACAAAATCCGTGTTTGGCAAGTCAACACTACCAATGAACAAAAGTTCAAATGCAAATGCATAGCAACGCTGCCGACACTGAAAGATCGTTTCCCTAGGCTCTTCTTCCCCAACAGTTACGTCCAAGTCCGGCGGCACAAGAAATTAACGTGGGTGCATCATGCGGACGCAATATCAGCTCTGGCGGTATCAAAGGACGAGTCTCTTTTATACTCGGCTTCATGGGACCGCACGTTCAAAATCTGGCGGACCTCCGACTTCAAGTGCTTGGAGTCGGTGAGCAACGCCCACGAGGATGCCATAAACGCAATAGTGGTGAGCAATGACGGGTTTGTTTACACTGGCTCGGCGGATAAGAAGATAAAGGTGTGGAAGAAACTCATTGGGGAAAAGCATCACACTCTTGTTGAGTCACTAGAGAAGCACAAGTCGGCGGTGAACGCCTTGGCTTTTAGCTCCGACGGGTCTGTGTTGTACTCCGGCGCGTGTGATCGGTCGATTCTGGTTTGGGAAAGAGATAATGGTGGCGGTGGTGGGATGGTTGTGGTGGGGGCCCTTAGAGGTCACACTAAGGCTATATTGTGTTTGGCGGTGGCGGGGAATTTAGTGTGTAGTGGTTCGGCGGATTGTAGTGTTAGGATTTGGAGGAGAGGGGTTGGTGATGATCGGAGTTACTCGTGTTTGGGTGTGTTGGAAGGTCATAGGCGGCCGGTGAAGTGTTTGACGGCGGCCGTGGATTTTGACGGTGACGATAGAAGTGATTATGTTAATTCTTTTGTTGTTTATAGTGGTAGTTTGGATTCTAACATTAAGGTGTGGCAAATACAGGTCCCTTTGGTTAATTCGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04934 map04934
Pfam Domains
Protein Families
WD40

Protein Analysis

413

Amino Acids

45.24

Weight (kDa)

8.95

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_SCAP PF24017 23 - 304 7e-12 SCAP Beta-propeller
WD40_Prp19 PF24814 65 - 301 1.9e-15 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 174 - 375 1.1e-23 THOC3 beta-propeller domain
WDR55 PF24796 176 - 254 2.4e-09 WDR55
WD40_Gbeta PF25391 177 - 345 2.7e-12 G protein beta WD-40 repeat protein
WD40 PF00400 180 - 212 2.9e-06 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 182 - 304 4.9e-13 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 183 - 301 2e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 183 - 305 1.3e-21 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 183 - 255 1.2e-09 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 184 - 303 2.6e-15 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 184 - 346 8.5e-13 WDHD1 first WD40 domain
NBCH_WD40 PF20426 187 - 257 3.6e-06 Neurobeachin beta propeller domain
Beta-prop_EML_2 PF23414 190 - 346 9.6e-12 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 226 - 301 1.7e-06 TEP-1 second beta-propeller
Beta-prop_WDR75_1st PF23869 238 - 301 8.7e-07 WD repeat-containing protein 75 first beta-propeller
Beta-prop_EML_2 PF23414 243 - 380 1.6e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 243 - 346 1.5e-08 CAF1B/HIR1 beta-propeller domain
WDR55 PF24796 261 - 345 6.7e-07 WDR55
Beta-prop_WDR5 PF25175 263 - 406 1.7e-19 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 264 - 404 9.5e-15 WDR3 first beta-propeller domain
WD40 PF00400 265 - 300 5.6e-08 WD domain, G-beta repeat
EIF3I PF24805 269 - 350 1.9e-07 EIF3I
WD40_Prp19 PF24814 289 - 372 2e-06 Prp19 WD40 domain
WD40 PF00400 313 - 345 5.7e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015016)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24130
fragaria_vesca FvH4_4g35150
malus_domestica MD13G1085800.v1.1 MD16G1085100.v1.1
prunus_persica Prupe.1G260900_v2.0.a1
pyrus_communis pycom13g07420 pycom16g07360
rosa_chinensis RchiOBHm_Chr4g0444751
rosa_laevigata RLG00000005805
rosa_multiflora Rmu_sc0000096.1_g000011
rosa_roxburghii Rroxscaffold_5G00385270
rosa_samantha Rh4AG415800 Rh4BG427100 Rh4CG442000 Rh4DG423100
rosa_wichuraiana Rw4G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 875
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 2 cut(s) 1097, 1119
AcsI RAATTY 1 cut(s) 991
AcuI CTGAAG 1 cut(s) 358
AfaI GTAC 3 cut(s) 43, 150, 866
AfeI AGCGCT 1 cut(s) 379
AgsI TTSAA 4 cut(s) 90, 439, 628, 652
AjuI GAANNNNNNNTTGG 4 cut(s) 102, 106, 134, 138
AloI GAACNNNNNNTCC 2 cut(s) 608, 640
AluBI AGCT 4 cut(s) 188, 285, 569, 846
AluI AGCT 4 cut(s) 188, 285, 569, 846
Alw26I GTCTC 3 cut(s) 285, 351, 597
AlwI GGATC 1 cut(s) 77
Aor51HI AGCGCT 1 cut(s) 379
AoxI GGCC 3 cut(s) 942, 1097, 1119
ApaI GGGCCC 1 cut(s) 946
ApeKI GCWGC 2 cut(s) 285, 460
ApoI RAATTY 1 cut(s) 991
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AspA2I CCTAGG 1 cut(s) 485
AspLEI GCGC 2 cut(s) 380, 875
AspS9I GGNCC 5 cut(s) 616, 639, 942, 943, 1219
AsuHPI GGTGA 7 cut(s) 374, 679, 718, 838, 1061, 1114, 1148
AvaII GGWCC 3 cut(s) 616, 639, 1219
AvrII CCTAGG 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 946
BanII GRGCYC 1 cut(s) 946
BauI CACGAG 2 cut(s) 680, 1066
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 272, 447
BccI CCATC 1 cut(s) 922
BceAI ACGGC 4 cut(s) 158, 280, 1106, 1131
BcoDI GTCTC 3 cut(s) 285, 351, 597
BfaI CTAG 5 cut(s) 224, 320, 350, 486, 806
BfmI CTRYAG 2 cut(s) 152, 286
BfoI RGCGCY 1 cut(s) 381
BisI GCNGC 6 cut(s) 31, 286, 461, 524, 1097, 1119
BlnI CCTAGG 1 cut(s) 485
BlsI GCNGC 6 cut(s) 32, 287, 462, 525, 1098, 1120
BmcAI AGTACT 1 cut(s) 150
Bme18I GGWCC 3 cut(s) 616, 639, 1219
BmgT120I GGNCC 5 cut(s) 616, 639, 942, 943, 1219
BmiI GGNNCC 5 cut(s) 205, 617, 943, 944, 1221
BmsI GCATC 3 cut(s) 556, 676, 793
BpiI GAAGAC 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 46
BsaJI CCNNGG 4 cut(s) 336, 485, 834, 1122
Bse118I RCCGGY 2 cut(s) 251, 1099
Bse1I ACTGG 2 cut(s) 63, 736
Bse3DI GCAATG 1 cut(s) 718
BseDI CCNNGG 4 cut(s) 336, 485, 834, 1122
BseGI GGATG 2 cut(s) 691, 933
BseMI GCAATG 1 cut(s) 718
BseNI ACTGG 2 cut(s) 63, 736
BseRI GAGGAG 3 cut(s) 85, 289, 1051
BseSI GKGCMC 1 cut(s) 946
BseX3I CGGCCG 2 cut(s) 1097, 1119
BseXI GCAGC 2 cut(s) 272, 447
Bsh1236I CGCG 1 cut(s) 875
Bsh1285I CGRYCG 3 cut(s) 887, 1100, 1122
BshFI GGCC 3 cut(s) 944, 1099, 1121
BsiEI CGRYCG 3 cut(s) 887, 1100, 1122
BsiSI CCGG 6 cut(s) 201, 234, 252, 520, 870, 1100
BslFI GGGAC 3 cut(s) 18, 629, 1205
BsmAI GTCTC 3 cut(s) 285, 351, 597
BsmFI GGGAC 3 cut(s) 18, 629, 1205
BsnI GGCC 3 cut(s) 944, 1099, 1121
Bsp120I GGGCCC 1 cut(s) 942
Bsp1286I GDGCHC 1 cut(s) 946
Bsp143I GATC 5 cut(s) 82, 275, 475, 880, 1054
BspANI GGCC 3 cut(s) 944, 1099, 1121
BspFNI CGCG 1 cut(s) 875
BspLI GGNNCC 5 cut(s) 205, 617, 943, 944, 1221
BspMAI CTGCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 77
BspQI GCTCTTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 718
BsrFI RCCGGY 2 cut(s) 251, 1099
BsrI ACTGG 2 cut(s) 63, 736
BssAI RCCGGY 2 cut(s) 251, 1099
BssECI CCNNGG 4 cut(s) 336, 485, 834, 1122
BssMI GATC 5 cut(s) 82, 275, 475, 880, 1054
BssSI CACGAG 2 cut(s) 680, 1066
BssT1I CCWWGG 2 cut(s) 485, 834
Bst2BI CACGAG 2 cut(s) 680, 1066
Bst4CI ACNGT 4 cut(s) 41, 340, 506, 1136
Bst6I CTCTTC 1 cut(s) 497
BstDEI CTNAG 2 cut(s) 947, 960
BstDSI CCRYGG 2 cut(s) 336, 1122
BstF5I GGATG 2 cut(s) 691, 933
BstFNI CGCG 1 cut(s) 875
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 2 cut(s) 380, 875
BstKTI GATC 5 cut(s) 85, 278, 478, 883, 1057
BstMAI GTCTC 3 cut(s) 285, 351, 597
BstMBI GATC 5 cut(s) 82, 275, 475, 880, 1054
BstMCI CGRYCG 3 cut(s) 887, 1100, 1122
BstMWI GCNNNNNNNGC 4 cut(s) 142, 566, 695, 830
BstSFI CTRYAG 2 cut(s) 152, 286
BstSLI GKGCMC 1 cut(s) 946
BstUI CGCG 1 cut(s) 875
BstV1I GCAGC 2 cut(s) 272, 447
BstV2I GAAGAC 1 cut(s) 110
BstZI CGGCCG 2 cut(s) 1097, 1119
BsuRI GGCC 3 cut(s) 944, 1099, 1121
BtgI CCRYGG 2 cut(s) 336, 1122
BtsCI GGATG 2 cut(s) 691, 933
BtsIMutI CAGTG 2 cut(s) 467, 729
CfoI GCGC 2 cut(s) 380, 875
Cfr10I RCCGGY 2 cut(s) 251, 1099
Cfr13I GGNCC 5 cut(s) 616, 639, 942, 943, 1219
CseI GACGC 1 cut(s) 566
Csp6I GTAC 3 cut(s) 42, 149, 865
CviAII CATG 4 cut(s) 15, 279, 551, 612
CviQI GTAC 3 cut(s) 42, 149, 865
DdeI CTNAG 2 cut(s) 947, 960
DpnI GATC 5 cut(s) 84, 277, 477, 882, 1056
DpnII GATC 5 cut(s) 82, 275, 475, 880, 1054
EaeI YGGCCR 2 cut(s) 1097, 1119
EagI CGGCCG 2 cut(s) 1097, 1119
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
EciI GGCGGA 4 cut(s) 196, 652, 755, 1028
EclXI CGGCCG 2 cut(s) 1097, 1119
Eco130I CCWWGG 2 cut(s) 485, 834
Eco24I GRGCYC 1 cut(s) 946
Eco47I GGWCC 3 cut(s) 616, 639, 1219
Eco47III AGCGCT 1 cut(s) 379
Eco52I CGGCCG 2 cut(s) 1097, 1119
Eco57I CTGAAG 1 cut(s) 358
EcoO109I RGGNCCY 3 cut(s) 942, 943, 1219
EcoT14I CCWWGG 2 cut(s) 485, 834
EcoT22I ATGCAT 1 cut(s) 452
EcoT38I GRGCYC 1 cut(s) 946
ErhI CCWWGG 2 cut(s) 485, 834
FaeI CATG 4 cut(s) 18, 282, 554, 615
FalI AAGNNNNNCTT 2 cut(s) 106, 138
FaqI GGGAC 3 cut(s) 18, 629, 1205
FatI CATG 4 cut(s) 14, 278, 550, 611
FauI CCCGC 1 cut(s) 979
Fnu4HI GCNGC 6 cut(s) 31, 286, 461, 524, 1097, 1119
FokI GGATG 2 cut(s) 698, 940
FriOI GRGCYC 1 cut(s) 946
Fsp4HI GCNGC 6 cut(s) 31, 286, 461, 524, 1097, 1119
FspBI CTAG 5 cut(s) 224, 320, 350, 486, 806
GlaI GCGC 2 cut(s) 379, 874
GluI GCNGC 6 cut(s) 31, 286, 461, 524, 1097, 1119
GsuI CTGGAG 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 3 cut(s) 944, 1099, 1121
HapII CCGG 6 cut(s) 201, 234, 252, 520, 870, 1100
HgaI GACGC 1 cut(s) 566
HhaI GCGC 2 cut(s) 380, 875
Hin1II CATG 4 cut(s) 18, 282, 554, 615
Hin6I GCGC 2 cut(s) 378, 873
HinP1I GCGC 2 cut(s) 378, 873
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 8 cut(s) 47, 53, 271, 590, 662, 800, 889, 1190
HpaII CCGG 6 cut(s) 201, 234, 252, 520, 870, 1100
HphI GGTGA 7 cut(s) 374, 679, 718, 838, 1061, 1114, 1148
Hpy166II GTNNAC 3 cut(s) 415, 727, 829
Hpy188I TCNGA 6 cut(s) 52, 82, 262, 646, 850, 1059
Hpy8I GTNNAC 3 cut(s) 415, 727, 829
Hpy99I CGWCG 2 cut(s) 266, 854
HpyAV CCTTC 5 cut(s) 83, 96, 132, 141, 1079
HpyCH4III ACNGT 4 cut(s) 41, 340, 506, 1136
HpyCH4IV ACGT 3 cut(s) 510, 539, 623
HpyCH4V TGCA 5 cut(s) 183, 288, 444, 450, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 566, 695, 830
HpyF3I CTNAG 2 cut(s) 947, 960
HpySE526I ACGT 3 cut(s) 510, 539, 623
Hsp92II CATG 4 cut(s) 18, 282, 554, 615
HspAI GCGC 2 cut(s) 378, 873
Kzo9I GATC 5 cut(s) 82, 275, 475, 880, 1054
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 3 cut(s) 209, 282, 851
Lsp1109I GCAGC 2 cut(s) 272, 447
LweI GCATC 3 cut(s) 556, 676, 793
MaeI CTAG 5 cut(s) 224, 320, 350, 486, 806
MaeII ACGT 3 cut(s) 510, 539, 623
MaeIII GTNAC 6 cut(s) 65, 506, 801, 953, 1061, 1136
MalI GATC 5 cut(s) 84, 277, 477, 882, 1056
MboI GATC 5 cut(s) 82, 275, 475, 880, 1054
MboII GAAGA 7 cut(s) 96, 110, 364, 484, 487, 760, 775
MhlI GDGCHC 1 cut(s) 946
MluCI AATT 4 cut(s) 533, 991, 1159, 1231
MlyI GAGTC 4 cut(s) 62, 599, 671, 809
MmeI TCCRAC 5 cut(s) 81, 285, 669, 873, 1062
MnlI CCTC 9 cut(s) 103, 106, 239, 310, 652, 676, 944, 1029, 1034
Mph1103I ATGCAT 1 cut(s) 452
MseI TTAA 6 cut(s) 177, 536, 1158, 1200, 1230, 1240
MslI CAYNNNNRTG 2 cut(s) 684, 1202
MspI CCGG 6 cut(s) 201, 234, 252, 520, 870, 1100
MvnI CGCG 1 cut(s) 875
MwoI GCNNNNNNNGC 4 cut(s) 142, 566, 695, 830
NdeII GATC 5 cut(s) 82, 275, 475, 880, 1054
NlaIII CATG 4 cut(s) 18, 282, 554, 615
NlaIV GGNNCC 5 cut(s) 205, 617, 943, 944, 1221
NmeAIII GCCGAG 2 cut(s) 584, 716
NmuCI GTSAC 3 cut(s) 801, 953, 1136
NsiI ATGCAT 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 497
PfeI GAWTC 4 cut(s) 47, 271, 889, 1190
PkrI GCNGC 6 cut(s) 32, 287, 462, 525, 1098, 1120
PleI GAGTC 4 cut(s) 61, 598, 670, 808
PpsI GAGTC 4 cut(s) 61, 598, 670, 808
PpuMI RGGWCCY 1 cut(s) 1219
Psp5II RGGWCCY 1 cut(s) 1219
PspN4I GGNNCC 5 cut(s) 205, 617, 943, 944, 1221
PspOMI GGGCCC 1 cut(s) 942
PspPI GGNCC 5 cut(s) 616, 639, 942, 943, 1219
PspPPI RGGWCCY 1 cut(s) 1219
PstI CTGCAG 1 cut(s) 290
RsaI GTAC 3 cut(s) 43, 150, 866
RsaNI GTAC 3 cut(s) 42, 149, 865
RseI CAYNNNNRTG 2 cut(s) 684, 1202
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 6 cut(s) 177, 536, 1158, 1200, 1230, 1240
SatI GCNGC 6 cut(s) 31, 286, 461, 524, 1097, 1119
Sau3AI GATC 5 cut(s) 82, 275, 475, 880, 1054
Sau96I GGNCC 5 cut(s) 616, 639, 942, 943, 1219
ScaI AGTACT 1 cut(s) 150
SchI GAGTC 4 cut(s) 62, 599, 671, 809
SduI GDGCHC 1 cut(s) 946
SfaNI GCATC 3 cut(s) 556, 676, 793
SfcI CTRYAG 2 cut(s) 152, 286
SinI GGWCC 3 cut(s) 616, 639, 1219
SmiMI CAYNNNNRTG 2 cut(s) 684, 1202
Sse9I AATT 4 cut(s) 533, 991, 1159, 1231
SspMI CTAG 5 cut(s) 224, 320, 350, 486, 806
StyI CCWWGG 2 cut(s) 485, 834
TaaI ACNGT 4 cut(s) 41, 340, 506, 1136
TaiI ACGT 3 cut(s) 513, 542, 626
TaqI TCGA 4 cut(s) 274, 302, 887, 1235
TaqII GACCGA 1 cut(s) 873
TasI AATT 4 cut(s) 533, 991, 1159, 1231
TatI WGTACW 3 cut(s) 41, 148, 864
TauI GCSGC 4 cut(s) 33, 526, 1099, 1121
TfiI GAWTC 4 cut(s) 47, 271, 889, 1190
Tru1I TTAA 6 cut(s) 177, 536, 1158, 1200, 1230, 1240
Tru9I TTAA 6 cut(s) 177, 536, 1158, 1200, 1230, 1240
TscAI CASTG 2 cut(s) 474, 736
TseFI GTSAC 3 cut(s) 801, 953, 1136
TseI GCWGC 2 cut(s) 285, 460
Tsp45I GTSAC 3 cut(s) 801, 953, 1136
TspDTI ATGAA 2 cut(s) 441, 600
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 2 cut(s) 474, 736
VpaK11BI GGWCC 3 cut(s) 616, 639, 1219
XapI RAATTY 1 cut(s) 991
XmaJI CCTAGG 1 cut(s) 485
XspI CTAG 5 cut(s) 224, 320, 350, 486, 806
ZrmI AGTACT 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.