Prupe.1G260900_v2.0.a1

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015016
Physical Location & Seq
Reverse (-)
27003181 .. 27004491
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G260900.1

Sequence Viewer

Length: 1311 bp
ATGGGACTTGTTCCATATCCCTTGCCATGTCACACAAGCACAGAAGAATCTCATGAAGATCACTCCAATATTTCCAATCACCTCCTCCAATCAGAAGCATCAACCTCTTCCTCCTCCTCTCTCTCTTCCCAACCAAGTTTACCATCTGTCCCTTCTCTCACTACCTCAATCTCCAACCAACTTCAACTTGTTCTAGAAGCCCCAACCACCCACCACCTCTGCATAGCCACCCTCAAAACCCAAACCTCCTCCTCCTACGTATGCTCCCTAGCCCTCTCCGGAAACTTCCTATACAGCGGCTTATCCAACGGTCAGATCATAGCATGGAGCCGATTACGCCCTTCATCACCCAACAAGGTGGTAGCCACCACCAACAGCACGGTTAAGTCTCTAGCGGTCGTTGGGGAGCTACTATTCAGCGCTCACCAAGACCACAAAATCCGGGTCTGGAAAATCGACATCAATCTCATCAAAAACCCACACGATCATCAAAAACACTTCAAATGCATCGCCACCCTCCCCACCCTAAAAGACCGGGTCCCACGATTCTTTTCTCCCAAGGACTATGTCCAAATCCGGCGACACAAGAAGTGCACCTGGGTGCACCACGTCGACACAGTCTCCGCCCTAGCCATATCCAACGACGGGTCGTTTCTCTACTCCGCCTCGTGGGACCGCACGTTCAAAATCTGGCGGACGTCGGATTTCAGATGCTTGGAGTCGGTGAGCAACGCCCACGACGACGCCATCAACGCTATAGCGTCGTCGCGTGACGGGGAGTTCGTCTACACCTGCTCTGCAGACAAGAAAATAAAGGTGTGGAAGAAAGTTAATAAGTCGGTCGTGCTTGATGCTACGCTGGAGAGGCACAAGTCGGCTGTGAATGCTTTGGCTTTTAGCTCCGATGGCTCTGTGCTCTACTCCGGTGCGTGCGATCGGTCAATTTTAGTGTGGGAAAGAGATCGTGGCGTTGAAGGCGGCGGCATGGTGGTGGTGGGTGCGCTGAGGGGACACAGCAAGGCCATATTGTGCTTGGCTGTGGTGGCGGATTTGGTGTTTAGTGGGTCGGCGGATTGTAGTGTTAGGGTTTGGAGGAGATCAGGGCGGCTAGTTGATGATGATCATAATAGGAGCATCGGCTATTCTTGTTTGGCTGTGTTGGAAGGTCACAGGAAGCCCGTTAAGTGTTTGACTGCAGCTTGTAACAATAGAAGTGAGGATTCTGATGATTCTGGTGATTCTTTTCTTGTTTACAGTGGGAGTTTGGATTGTGATATTAAGCTCTGGCAAATACATGTTCCCTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04934 map04934
Pfam Domains
Protein Families
WD40

Protein Analysis

437

Amino Acids

47.97

Weight (kDa)

8.46

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015016)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24130
fragaria_vesca FvH4_4g35150
malus_domestica MD13G1085800.v1.1 MD16G1085100.v1.1
prunus_persica Prupe.1G260900_v2.0.a1
pyrus_communis pycom13g07420 pycom16g07360
rosa_chinensis RchiOBHm_Chr4g0444751
rosa_laevigata RLG00000005805
rosa_multiflora Rmu_sc0000096.1_g000011
rosa_roxburghii Rroxscaffold_5G00385270
rosa_samantha Rh4AG415800 Rh4BG427100 Rh4CG442000 Rh4DG423100
rosa_wichuraiana Rw4G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 800
AatII GACGTC 1 cut(s) 701
Acc36I ACCTGC 1 cut(s) 800
AccI GTMKAC 2 cut(s) 612, 786
AccII CGCG 1 cut(s) 769
AccIII TCCGGA 1 cut(s) 278
AcyI GRCGYC 2 cut(s) 698, 744
AfeI AGCGCT 1 cut(s) 421
AfiI CCNNNNNNNGG 2 cut(s) 645, 669
AflIII ACRYGT 1 cut(s) 1294
AgsI TTSAA 4 cut(s) 185, 502, 685, 974
AjiI CACGTC 1 cut(s) 610
AjnI CCWGG 1 cut(s) 596
AleI CACNNNNGTG 1 cut(s) 599
AloI GAACNNNNNNTCC 2 cut(s) 665, 697
AluBI AGCT 4 cut(s) 409, 900, 1199, 1282
AluI AGCT 4 cut(s) 409, 900, 1199, 1282
Alw21I GWGCWC 3 cut(s) 596, 606, 918
Alw26I GTCTC 2 cut(s) 393, 625
Alw44I GTGCAC 2 cut(s) 592, 602
Aor13HI TCCGGA 1 cut(s) 278
Aor51HI AGCGCT 1 cut(s) 421
AoxI GGCC 1 cut(s) 1020
ApaLI GTGCAC 2 cut(s) 592, 602
ApeKI GCWGC 1 cut(s) 1196
ArsI GACNNNNNNTTYG 4 cut(s) 429, 461, 764, 796
AspLEI GCGC 2 cut(s) 422, 1003
AspS9I GGNCC 2 cut(s) 538, 673
AsuC2I CCSGG 2 cut(s) 443, 536
AsuHPI GGTGA 5 cut(s) 71, 339, 416, 736, 1247
AvaII GGWCC 2 cut(s) 538, 673
BaeGI GKGCMC 2 cut(s) 596, 606
BauI CACGAG 1 cut(s) 667
Bbv12I GWGCWC 3 cut(s) 596, 606, 918
BbvCI CCTCAGC 1 cut(s) 1004
BbvI GCAGC 1 cut(s) 1208
BccI CCATC 3 cut(s) 151, 755, 899
BciT130I CCWGG 1 cut(s) 598
BclI TGATCA 1 cut(s) 1120
BcnI CCSGG 2 cut(s) 443, 536
BcoDI GTCTC 2 cut(s) 393, 625
BfaI CTAG 5 cut(s) 194, 269, 392, 629, 1109
BfmI CTRYAG 3 cut(s) 756, 798, 1194
BfoI RGCGCY 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 800
BisI GCNGC 5 cut(s) 298, 979, 982, 1106, 1197
BlsI GCNGC 5 cut(s) 299, 980, 983, 1107, 1198
Bme1390I CCNGG 3 cut(s) 443, 536, 598
Bme18I GGWCC 2 cut(s) 538, 673
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 538, 673
BmiI GGNNCC 4 cut(s) 329, 539, 540, 674
BmrFI CCNGG 3 cut(s) 443, 536, 598
BmsI GCATC 5 cut(s) 107, 516, 701, 841, 1143
BpmI CTGGAG 1 cut(s) 881
Bpu10I CCTNAGC 1 cut(s) 1004
BpuMI CCSGG 2 cut(s) 443, 536
BsaAI YACGTR 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 1119
BsaHI GRCGYC 2 cut(s) 698, 744
BsaJI CCNNGG 2 cut(s) 558, 597
BsaWI WCCGGW 2 cut(s) 278, 923
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 645, 669
Bse8I GATNNNNATC 1 cut(s) 1119
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 1 cut(s) 598
BseDI CCNNGG 2 cut(s) 558, 597
BseJI GATNNNNATC 1 cut(s) 1119
BseLI CCNNNNNNNGG 2 cut(s) 645, 669
BseMII CTCAG 1 cut(s) 995
BseRI GAGGAG 6 cut(s) 74, 103, 106, 238, 241, 1108
BseSI GKGCMC 2 cut(s) 596, 606
BseXI GCAGC 1 cut(s) 1208
Bsh1236I CGCG 1 cut(s) 769
Bsh1285I CGRYCG 3 cut(s) 399, 843, 937
BshFI GGCC 1 cut(s) 1022
BsiEI CGRYCG 3 cut(s) 399, 843, 937
BsiHKAI GWGCWC 3 cut(s) 596, 606, 918
BsiSI CCGG 5 cut(s) 279, 442, 535, 577, 924
BslFI GGGAC 5 cut(s) 18, 134, 524, 686, 1023
BslI CCNNNNNNNGG 2 cut(s) 645, 669
BsmAI GTCTC 2 cut(s) 393, 625
BsmFI GGGAC 5 cut(s) 18, 134, 524, 686, 1023
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 1 cut(s) 1022
Bsp1286I GDGCHC 3 cut(s) 596, 606, 918
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 7 cut(s) 58, 315, 484, 934, 961, 1097, 1120
BspANI GGCC 1 cut(s) 1022
BspCNI CTCAG 1 cut(s) 996
BspEI TCCGGA 1 cut(s) 278
BspFNI CGCG 1 cut(s) 769
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 4 cut(s) 329, 539, 540, 674
BspMAI CTGCAG 2 cut(s) 802, 1198
BspMI ACCTGC 1 cut(s) 800
BssECI CCNNGG 2 cut(s) 558, 597
BssMI GATC 7 cut(s) 58, 315, 484, 934, 961, 1097, 1120
BssNI GRCGYC 2 cut(s) 698, 744
BssSI CACGAG 1 cut(s) 667
BssT1I CCWWGG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 667
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 4 cut(s) 311, 382, 619, 1256
Bst6I CTCTTC 2 cut(s) 112, 130
BstACI GRCGYC 2 cut(s) 698, 744
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 931
BstDEI CTNAG 1 cut(s) 1004
BstFNI CGCG 1 cut(s) 769
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 2 cut(s) 422, 1003
BstKTI GATC 7 cut(s) 61, 318, 487, 937, 964, 1100, 1123
BstMAI GTCTC 2 cut(s) 393, 625
BstMBI GATC 7 cut(s) 58, 315, 484, 934, 961, 1097, 1120
BstMCI CGRYCG 3 cut(s) 399, 843, 937
BstMWI GCNNNNNNNGC 7 cut(s) 336, 752, 865, 884, 906, 975, 1043
BstNI CCWGG 1 cut(s) 598
BstNSI RCATGY 1 cut(s) 1298
BstSCI CCNGG 3 cut(s) 441, 534, 596
BstSFI CTRYAG 3 cut(s) 756, 798, 1194
BstSLI GKGCMC 2 cut(s) 596, 606
BstSNI TACGTA 1 cut(s) 259
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 1 cut(s) 1208
BstXI CCANNNNNNTGG 1 cut(s) 358
BsuRI GGCC 1 cut(s) 1022
BtgZI GCGATG 1 cut(s) 493
BtrI CACGTC 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 1261
BveI ACCTGC 1 cut(s) 800
Cac8I GCNNGC 1 cut(s) 931
CciI TCATGA 1 cut(s) 52
CfoI GCGC 2 cut(s) 422, 1003
Cfr13I GGNCC 2 cut(s) 538, 673
CseI GACGC 2 cut(s) 750, 752
CviAII CATG 5 cut(s) 27, 53, 324, 985, 1295
DdeI CTNAG 1 cut(s) 1004
DpnI GATC 7 cut(s) 60, 317, 486, 936, 963, 1099, 1122
DpnII GATC 7 cut(s) 58, 315, 484, 934, 961, 1097, 1120
Eam1104I CTCTTC 2 cut(s) 112, 130
EarI CTCTTC 2 cut(s) 112, 130
EciI GGCGGA 5 cut(s) 613, 652, 709, 1061, 1085
Eco105I TACGTA 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 538, 673
Eco47III AGCGCT 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 596
EcoT14I CCWWGG 1 cut(s) 558
EcoT22I ATGCAT 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 5 cut(s) 30, 56, 327, 988, 1298
FaqI GGGAC 5 cut(s) 18, 134, 524, 686, 1023
FatI CATG 5 cut(s) 26, 52, 323, 984, 1294
FbaI TGATCA 1 cut(s) 1120
FblI GTMKAC 2 cut(s) 612, 786
Fnu4HI GCNGC 5 cut(s) 298, 979, 982, 1106, 1197
Fsp4HI GCNGC 5 cut(s) 298, 979, 982, 1106, 1197
FspBI CTAG 5 cut(s) 194, 269, 392, 629, 1109
GlaI GCGC 2 cut(s) 421, 1002
GluI GCNGC 5 cut(s) 298, 979, 982, 1106, 1197
GsuI CTGGAG 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 1 cut(s) 1022
HapII CCGG 5 cut(s) 279, 442, 535, 577, 924
HgaI GACGC 2 cut(s) 750, 752
HhaI GCGC 2 cut(s) 422, 1003
Hin1I GRCGYC 2 cut(s) 698, 744
Hin1II CATG 5 cut(s) 30, 56, 327, 988, 1298
Hin6I GCGC 2 cut(s) 420, 1001
HinP1I GCGC 2 cut(s) 420, 1001
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 6 cut(s) 47, 546, 719, 1220, 1229, 1238
HpaII CCGG 5 cut(s) 279, 442, 535, 577, 924
HphI GGTGA 5 cut(s) 71, 339, 416, 736, 1247
Hpy166II GTNNAC 6 cut(s) 140, 594, 604, 613, 787, 1252
Hpy188I TCNGA 6 cut(s) 94, 315, 703, 710, 904, 1225
Hpy188III TCNNGA 4 cut(s) 53, 194, 279, 448
Hpy8I GTNNAC 6 cut(s) 140, 594, 604, 613, 787, 1252
Hpy99I CGWCG 7 cut(s) 614, 647, 703, 743, 746, 766, 769
HpyAV CCTTC 4 cut(s) 162, 351, 968, 1157
HpyCH4III ACNGT 4 cut(s) 311, 382, 619, 1256
HpyCH4IV ACGT 4 cut(s) 258, 609, 680, 698
HpyCH4V TGCA 6 cut(s) 222, 507, 594, 604, 800, 1196
HpyF10VI GCNNNNNNNGC 7 cut(s) 336, 752, 865, 884, 906, 975, 1043
HpyF3I CTNAG 1 cut(s) 1004
HpySE526I ACGT 4 cut(s) 258, 609, 680, 698
Hsp92I GRCGYC 2 cut(s) 698, 744
Hsp92II CATG 5 cut(s) 30, 56, 327, 988, 1298
HspAI GCGC 2 cut(s) 420, 1001
KflI GGGWCCC 1 cut(s) 538
Kpn2I TCCGGA 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 7 cut(s) 58, 315, 484, 934, 961, 1097, 1120
LmnI GCTCC 5 cut(s) 269, 327, 406, 905, 1131
Lsp1109I GCAGC 1 cut(s) 1208
LweI GCATC 5 cut(s) 107, 516, 701, 841, 1143
MaeI CTAG 5 cut(s) 194, 269, 392, 629, 1109
MaeII ACGT 4 cut(s) 258, 609, 680, 698
MaeIII GTNAC 4 cut(s) 29, 770, 1166, 1202
MalI GATC 7 cut(s) 60, 317, 486, 936, 963, 1099, 1122
MboI GATC 7 cut(s) 58, 315, 484, 934, 961, 1097, 1120
MboII GAAGA 5 cut(s) 56, 68, 99, 117, 835
MhlI GDGCHC 3 cut(s) 596, 606, 918
MluCI AATT 1 cut(s) 942
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 5 cut(s) 198, 330, 663, 681, 1140
Mph1103I ATGCAT 1 cut(s) 509
MroI TCCGGA 1 cut(s) 278
MseI TTAA 5 cut(s) 384, 831, 1182, 1278, 1309
MslI CAYNNNNRTG 2 cut(s) 599, 989
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 5 cut(s) 279, 442, 535, 577, 924
MspR9I CCNGG 3 cut(s) 443, 536, 598
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 1 cut(s) 598
MvnI CGCG 1 cut(s) 769
MwoI GCNNNNNNNGC 7 cut(s) 336, 752, 865, 884, 906, 975, 1043
NciI CCSGG 2 cut(s) 443, 536
NdeII GATC 7 cut(s) 58, 315, 484, 934, 961, 1097, 1120
NlaIII CATG 5 cut(s) 30, 56, 327, 988, 1298
NlaIV GGNNCC 4 cut(s) 329, 539, 540, 674
NmuCI GTSAC 3 cut(s) 29, 770, 1166
NsiI ATGCAT 1 cut(s) 509
NspI RCATGY 1 cut(s) 1298
OliI CACNNNNGTG 1 cut(s) 599
PagI TCATGA 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 800
PciI ACATGT 1 cut(s) 1294
PcsI WCGNNNNNNNCGW 2 cut(s) 738, 780
PctI GAATGC 1 cut(s) 889
PfeI GAWTC 5 cut(s) 47, 546, 1220, 1229, 1238
PflFI GACNNNGTC 3 cut(s) 536, 566, 617
PkrI GCNGC 5 cut(s) 299, 980, 983, 1107, 1198
Ple19I CGATCG 1 cut(s) 937
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
Ppu21I YACGTR 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 538
PscI ACATGT 1 cut(s) 1294
Psp5II RGGWCCY 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 596
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 4 cut(s) 329, 539, 540, 674
PspPI GGNCC 2 cut(s) 538, 673
PspPPI RGGWCCY 1 cut(s) 538
PstI CTGCAG 2 cut(s) 802, 1198
PsyI GACNNNGTC 3 cut(s) 536, 566, 617
PvuI CGATCG 1 cut(s) 937
RseI CAYNNNNRTG 2 cut(s) 599, 989
SalI GTCGAC 1 cut(s) 611
SaqAI TTAA 5 cut(s) 384, 831, 1182, 1278, 1309
SatI GCNGC 5 cut(s) 298, 979, 982, 1106, 1197
Sau3AI GATC 7 cut(s) 58, 315, 484, 934, 961, 1097, 1120
Sau96I GGNCC 2 cut(s) 538, 673
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 3 cut(s) 443, 536, 598
SduI GDGCHC 3 cut(s) 596, 606, 918
SfaNI GCATC 5 cut(s) 107, 516, 701, 841, 1143
SfcI CTRYAG 3 cut(s) 756, 798, 1194
SinI GGWCC 2 cut(s) 538, 673
SmiMI CAYNNNNRTG 2 cut(s) 599, 989
SnaBI TACGTA 1 cut(s) 259
Sse9I AATT 1 cut(s) 942
SspI AATATT 1 cut(s) 70
SspMI CTAG 5 cut(s) 194, 269, 392, 629, 1109
StyD4I CCNGG 3 cut(s) 441, 534, 596
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 4 cut(s) 311, 382, 619, 1256
TaiI ACGT 4 cut(s) 261, 612, 683, 701
TaqI TCGA 2 cut(s) 456, 612
TaqII GACCGA 2 cut(s) 829, 927
TasI AATT 1 cut(s) 942
TauI GCSGC 4 cut(s) 300, 981, 984, 1108
TfiI GAWTC 5 cut(s) 47, 546, 1220, 1229, 1238
Tru1I TTAA 5 cut(s) 384, 831, 1182, 1278, 1309
Tru9I TTAA 5 cut(s) 384, 831, 1182, 1278, 1309
TscAI CASTG 1 cut(s) 1261
TseFI GTSAC 3 cut(s) 29, 770, 1166
TseI GCWGC 1 cut(s) 1196
Tsp45I GTSAC 3 cut(s) 29, 770, 1166
TspDTI ATGAA 2 cut(s) 69, 333
TspRI CASTG 1 cut(s) 1261
Tth111I GACNNNGTC 3 cut(s) 536, 566, 617
VneI GTGCAC 2 cut(s) 592, 602
VpaK11BI GGWCC 2 cut(s) 538, 673
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 1 cut(s) 1298
XcmI CCANNNNNNNNNTGG 1 cut(s) 1030
XmiI GTMKAC 2 cut(s) 612, 786
XspI CTAG 5 cut(s) 194, 269, 392, 629, 1109
ZraI GACGTC 1 cut(s) 699
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.