Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Reverse (-)

8593536 .. 8596123

Gene Structure 2588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGAAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTGACGTTTGCAAAGAGAAGGAATGGTCTTTTGAAGAAAGCATACGAGCTTTCAGTTCTATGTGATGCAGAAGTTGCTCTCATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCGAGCATGCTTCGGACACTGGAGAGGTACCAAAAGTGTAACTATGGAGCACCAGAACCCAATGTGCCTTCAAGAGAGGCCTTAGCAGAACTTAGTAGCCAGCAGGAGTATCTCAAGCTTAAGGAGCGTTATGACGCCTTACAGAGAACCCAAAGGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTCACTTGAGAGACAGCTTGATTCTTCCTTGAAGCAGATCAGAGCTCTCAGGACACAGTTTATGCTTGACCAGCTCAACGATCTTCAGAGTAAGGAACGCATGCTGACTGAGACAAATAAAACTCTAAGACTAAGGTTAGCTGATGGGTATCAGATGCCACTCCAGCTGAACCCTAACCAAGAAGAGGTTGATCACTACGGTCGTCATCATCATCAACAACAACAACACTCCCAAGCTTTCTTCCAGCCTTTGGAATGTGAACCCATTCTTCAGATCGGGTATCAGGGGCAACAAGATGGAATGGGAGCAGGACCAAGTGTGAATAATTACATGTTGGGTTGGTTACCTTATGACACCAACTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

250

Amino Acids

28.97

Weight (kDa)

8.27

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.7e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	93 - 175	7.7e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	634
AcuI	CTGAAG	2 cut(s)	452, 638
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	3 cut(s)	164, 209, 370
AfiI	CCNNNNNNNGG	2 cut(s)	568, 634
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	714
AgsI	TTSAA	4 cut(s)	25, 88, 252, 415
Alw21I	GWGCWC	2 cut(s)	232, 430
Alw26I	GTCTC	2 cut(s)	388, 488
AoxI	GGCC	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	648
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	359, 695
AvaII	GGWCC	2 cut(s)	359, 695
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
Bbv12I	GWGCWC	2 cut(s)	232, 430
BccI	CCATC	2 cut(s)	521, 674
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	388, 488
BfrI	CTTAAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	352
Bme18I	GGWCC	2 cut(s)	359, 695
BmgT120I	GGNCC	2 cut(s)	359, 695
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	2 cut(s)	109, 528
BpmI	CTGGAG	2 cut(s)	221, 530
Bpu10I	CCTNAGC	1 cut(s)	262
BpuEI	CTTGAG	3 cut(s)	278, 401, 410
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 634
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	531
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	568, 634
BseMII	CTCAG	2 cut(s)	445, 483
BseNI	ACTGG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	586
BshFI	GGCC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	586
BsiHKAI	GWGCWC	2 cut(s)	232, 430
BslI	CCNNNNNNNGG	2 cut(s)	568, 634
BsmAI	GTCTC	2 cut(s)	388, 488
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	232, 430
Bsp143I	GATC	6 cut(s)	42, 352, 420, 463, 574, 657
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	444, 484
BspLI	GGNNCC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	207
BspTI	CTTAAG	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	204
BssMI	GATC	6 cut(s)	42, 352, 420, 463, 574, 657
BssNI	GRCGYC	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	441, 584
Bst6I	CTCTTC	2 cut(s)	20, 561
BstACI	GRCGYC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	188, 281, 485
BstDEI	CTNAG	7 cut(s)	262, 272, 365, 431, 492, 509, 515
BstEII	GGTNACC	1 cut(s)	726
BstKTI	GATC	6 cut(s)	45, 355, 423, 466, 577, 660
BstMAI	GTCTC	2 cut(s)	388, 488
BstMBI	GATC	6 cut(s)	42, 352, 420, 463, 574, 657
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 304, 454, 547
BstNSI	RCATGY	3 cut(s)	190, 487, 718
BstPI	GGTNACC	1 cut(s)	726
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	188, 281, 485
Cfr13I	GGNCC	2 cut(s)	359, 695
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	163, 208, 369
CviAII	CATG	3 cut(s)	187, 484, 715
CviQI	GTAC	3 cut(s)	163, 208, 369
DdeI	CTNAG	7 cut(s)	262, 272, 365, 431, 492, 509, 515
DpnI	GATC	6 cut(s)	44, 354, 422, 465, 576, 659
DpnII	GATC	6 cut(s)	42, 352, 420, 463, 574, 657
Eam1104I	CTCTTC	2 cut(s)	20, 561
EarI	CTCTTC	2 cut(s)	20, 561
Ecl136II	GAGCTC	1 cut(s)	428
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	359, 695
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	452, 638
Eco91I	GGTNACC	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	430
FaeI	CATG	3 cut(s)	190, 487, 718
FaiI	YATR	9 cut(s)	97, 115, 188, 225, 312, 446, 485, 716, 735
FatI	CATG	3 cut(s)	186, 483, 714
FbaI	TGATCA	1 cut(s)	574
FriOI	GRGCYC	1 cut(s)	430
GsuI	CTGGAG	2 cut(s)	221, 530
HaeIII	GGCC	1 cut(s)	260
HgaI	GACGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	190, 487, 718
HindIII	AAGCTT	2 cut(s)	296, 618
HinfI	GANTC	3 cut(s)	337, 383, 404
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	5 cut(s)	195, 425, 471, 537, 657
Hpy188III	TCNNGA	2 cut(s)	252, 433
Hpy8I	GTNNAC	1 cut(s)	644
HpyAV	CCTTC	2 cut(s)	66, 258
HpyCH4III	ACNGT	2 cut(s)	441, 584
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	65, 122, 174
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 304, 454, 547
HpyF3I	CTNAG	7 cut(s)	262, 272, 365, 431, 492, 509, 515
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	190, 487, 718
KpnI	GGTACC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	6 cut(s)	42, 352, 420, 463, 574, 657
LmnI	GCTCC	4 cut(s)	227, 304, 376, 689
LweI	GCATC	2 cut(s)	109, 528
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	4 cut(s)	55, 218, 384, 726
MalI	GATC	6 cut(s)	44, 354, 422, 465, 576, 659
MboI	GATC	6 cut(s)	42, 352, 420, 463, 574, 657
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	232, 430
MluCI	AATT	2 cut(s)	20, 709
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	6 cut(s)	21, 146, 198, 250, 372, 562
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	550
MspCI	CTTAAG	1 cut(s)	299
MwoI	GCNNNNNNNGC	4 cut(s)	128, 304, 454, 547
NdeII	GATC	6 cut(s)	42, 352, 420, 463, 574, 657
NlaIII	CATG	3 cut(s)	190, 487, 718
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	55, 384
NspI	RCATGY	3 cut(s)	190, 487, 718
PaeI	GCATGC	2 cut(s)	190, 487
PceI	AGGCCT	1 cut(s)	260
PciI	ACATGT	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	337, 404
PflMI	CCANNNNNTGG	1 cut(s)	634
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PscI	ACATGT	1 cut(s)	714
Psp124BI	GAGCTC	1 cut(s)	430
PspEI	GGTNACC	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	359, 695
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	550
RsaI	GTAC	3 cut(s)	164, 209, 370
RsaNI	GTAC	3 cut(s)	163, 208, 369
SacI	GAGCTC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	6 cut(s)	42, 352, 420, 463, 574, 657
Sau96I	GGNCC	2 cut(s)	359, 695
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	232, 430
SfaNI	GCATC	2 cut(s)	109, 528
SinI	GGWCC	2 cut(s)	359, 695
SmlI	CTYRAG	4 cut(s)	293, 299, 380, 389
SmoI	CTYRAG	4 cut(s)	293, 299, 380, 389
SphI	GCATGC	2 cut(s)	190, 487
Sse9I	AATT	2 cut(s)	20, 709
SseBI	AGGCCT	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	430
StuI	AGGCCT	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	441, 584
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	20, 709
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	337, 404
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	2 cut(s)	55, 384
Tsp45I	GTSAC	2 cut(s)	55, 384
TspRI	CASTG	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	634
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	359, 695
XceI	RCATGY	3 cut(s)	190, 487, 718
XmnI	GAANNNNTTC	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.