Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010155.1

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Forward (+)

26257 .. 29999

Gene Structure 3743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010155.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggggagggggagagttgagctgaagaggattgagaacaagatcaacaggcaggtgacctttgcaaagagaaggaacggactattgaagaaagcctacgagctttccgttctttgcgatgccgaggttgctctcatcatcttctccaatagaggaaagctgtacgagttttgcagtagttcaagcatgctcaaaacacttgagaggtaccagaagtgcaactatggagcaccggagacaaatgtatctacaagggaggccttggaattgagtagccagcaggagtatttgaagctcaaggcacgttatgaagccctacaaagaaaccaaaggaatcttcttggagaagatcttggccctttaagtagcaaagagcttgaatcacttgaaaggcagctggatctgtcattgaagcagatcagatcaacacgggtacttgacctcatctcctttaccatttataaattatcacattgttttcctcacaatagttccactaatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

168

Amino Acids

19.38

Weight (kDa)

9.51

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	3 cut(s)	164, 209, 435
AgsI	TTSAA	6 cut(s)	88, 183, 292, 380, 389, 412
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	6 cut(s)	22, 103, 160, 295, 376, 397
AluI	AGCT	6 cut(s)	22, 103, 160, 295, 376, 397
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	2 cut(s)	258, 355
ApeKI	GCWGC	1 cut(s)	394
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	67
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BanI	GGYRCC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	221, 281
BsaJI	CCNNGG	2 cut(s)	123, 261
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
BseDI	CCNNGG	2 cut(s)	123, 261
BseXI	GCAGC	1 cut(s)	406
BshFI	GGCC	2 cut(s)	260, 357
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	260, 357
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	42, 349, 400, 417, 422
BspANI	GGCC	2 cut(s)	260, 357
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	123, 261
BssMI	GATC	5 cut(s)	42, 349, 400, 417, 422
BssT1I	CCWWGG	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	188, 278
BstEII	GGTNACC	1 cut(s)	55
BstKTI	GATC	5 cut(s)	45, 352, 403, 420, 425
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	5 cut(s)	42, 349, 400, 417, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	190
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	2 cut(s)	349, 400
BstYI	RGATCY	2 cut(s)	349, 400
BsuRI	GGCC	2 cut(s)	260, 357
BtgZI	GCGATG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	188, 278
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	3 cut(s)	163, 208, 434
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	3 cut(s)	163, 208, 434
DpnI	GATC	5 cut(s)	44, 351, 402, 419, 424
DpnII	GATC	5 cut(s)	42, 349, 400, 417, 422
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	44
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	190
FaiI	YATR	4 cut(s)	188, 225, 309, 462
FatI	CATG	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	260, 357
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	2 cut(s)	334, 380
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	65, 174, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	42, 349, 400, 417, 422
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	7 cut(s)	34, 38, 224, 246, 266, 290, 383
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	44, 351, 402, 419, 424
MboI	GATC	5 cut(s)	42, 349, 400, 417, 422
MboII	GAAGA	5 cut(s)	37, 100, 133, 329, 359
MflI	RGATCY	2 cut(s)	349, 400
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	2 cut(s)	266, 464
MnlI	CCTC	7 cut(s)	21, 118, 146, 198, 250, 452, 492
MseI	TTAA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	5 cut(s)	42, 349, 400, 417, 422
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	209
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	334, 380
PkrI	GCNGC	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	462
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	349, 400
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	164, 209, 435
RsaNI	GTAC	3 cut(s)	163, 208, 434
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	5 cut(s)	42, 349, 400, 417, 422
Sau96I	GGNCC	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	200, 296
SmoI	CTYRAG	2 cut(s)	200, 296
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	2 cut(s)	266, 464
SseBI	AGGCCT	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	261
TaiI	ACGT	1 cut(s)	307
TasI	AATT	2 cut(s)	266, 464
TfiI	GAWTC	2 cut(s)	334, 380
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	324
TspGWI	ACGGA	2 cut(s)	93, 97
XceI	RCATGY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.