Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Reverse (-)

8763883 .. 8767073

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1121800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTGTTGTACAGCATGCTCAAAACTCTTGACAGGTACCAGAAGTGCAGCTATGCAGCACCGGAGACAAATGTATCTACAAGGGAGGCCTTGGAATTGAGTAGCCAGCAGGAGTATTTGAAGCTCAAGGCACATTTTGAAGCCCTACAACGAAACCAAAGGAATCTCCTTGGAGAAGATCTTGGCCATTTAAGCAGCAAAGAGCTTGAATCGCTTGAAAGGCAGCTGGACATGTCGCTGAAGCAGATCAGATCGACACGGACCCAATACATGCTGGATCAGCTCACAGACCTTCAGCGAAATGAACACGTGCTAAACGAAGCAAACAAGACCCTGAAACAAAGGGAGTACGGCCGCCAACAAGCTGCCGACGAGTACAACCGCCAACAAGCTCAGGTGGCGCAGGGTGATGGCTTCTTCCATCCCTTAGACTGCGAGCCCACTTTACAGATTGGATATCAGAATGATCCAATATCCGTGGTGACAGCAGGTCCAAGCGTGAGTAATTACATGGGAGGATGGTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

177

Amino Acids

20.26

Weight (kDa)

5.59

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	34 - 115	3e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	36
AccB1I	GGYRCC	1 cut(s)	36
AciI	CCGC	2 cut(s)	355, 382
AclWI	GGATC	2 cut(s)	285, 461
AcoI	YGGCCR	2 cut(s)	184, 352
AcuI	CTGAAG	2 cut(s)	260, 278
AcvI	CACGTG	1 cut(s)	310
AfaI	GTAC	4 cut(s)	11, 38, 350, 377
AflIII	ACRYGT	2 cut(s)	231, 307
AgsI	TTSAA	4 cut(s)	121, 140, 209, 218
AhdI	GACNNNNNGTC	1 cut(s)	489
AluBI	AGCT	7 cut(s)	51, 124, 205, 226, 283, 365, 392
AluI	AGCT	7 cut(s)	51, 124, 205, 226, 283, 365, 392
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	285, 461
AoxI	GGCC	3 cut(s)	87, 184, 352
ApeKI	GCWGC	5 cut(s)	48, 56, 195, 223, 365
Asp718I	GGTACC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	261, 491
AsuHPI	GGTGA	2 cut(s)	419, 493
AvaII	GGWCC	2 cut(s)	261, 491
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BalI	TGGCCA	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	441
BbrPI	CACGTG	1 cut(s)	310
BbvI	GCAGC	5 cut(s)	60, 68, 207, 235, 352
BccI	CCATC	3 cut(s)	404, 429, 513
BceAI	ACGGC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	6 cut(s)	49, 57, 196, 224, 355, 366
BlsI	GCNGC	6 cut(s)	50, 58, 197, 225, 356, 367
Bme18I	GGWCC	2 cut(s)	261, 491
BmeRI	GACNNNNNGTC	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	261, 491
BmiI	GGNNCC	2 cut(s)	38, 263
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	310
BsaJI	CCNNGG	3 cut(s)	90, 169, 477
BsaWI	WCCGGW	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	90, 169, 477
BseGI	GGATG	2 cut(s)	421, 524
BseMII	CTCAG	1 cut(s)	407
BseX3I	CGGCCG	1 cut(s)	352
BseXI	GCAGC	5 cut(s)	60, 68, 207, 235, 352
BsgI	GTGCAG	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	3 cut(s)	89, 186, 354
BshNI	GGYRCC	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	89, 186, 354
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp1407I	TGTACA	1 cut(s)	9
Bsp143I	GATC	5 cut(s)	178, 246, 251, 277, 466
BspACI	CCGC	2 cut(s)	355, 382
BspANI	GGCC	3 cut(s)	89, 186, 354
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	38, 263
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	2 cut(s)	285, 461
BspT107I	GGYRCC	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	9
BssECI	CCNNGG	3 cut(s)	90, 169, 477
BssMI	GATC	5 cut(s)	178, 246, 251, 277, 466
BssT1I	CCWWGG	2 cut(s)	90, 169
BstAUI	TGTACA	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	17, 107, 437
BstDEI	CTNAG	2 cut(s)	393, 427
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	421, 524
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	5 cut(s)	181, 249, 254, 280, 469
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	5 cut(s)	178, 246, 251, 277, 466
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	5 cut(s)	192, 211, 220, 280, 398
BstNSI	RCATGY	3 cut(s)	19, 235, 274
BstV1I	GCAGC	5 cut(s)	60, 68, 207, 235, 352
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	89, 186, 354
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	421, 524
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	3 cut(s)	17, 107, 437
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	261, 491
Csp6I	GTAC	4 cut(s)	10, 37, 349, 376
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviAII	CATG	5 cut(s)	16, 232, 271, 511, 528
CviQI	GTAC	4 cut(s)	10, 37, 349, 376
DdeI	CTNAG	2 cut(s)	393, 427
DpnI	GATC	5 cut(s)	180, 248, 253, 279, 468
DpnII	GATC	5 cut(s)	178, 246, 251, 277, 466
DriI	GACNNNNNGTC	1 cut(s)	489
EaeI	YGGCCR	2 cut(s)	184, 352
EagI	CGGCCG	1 cut(s)	352
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	90, 169
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	441
Eco32I	GATATC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	261, 491
Eco52I	CGGCCG	1 cut(s)	352
Eco57I	CTGAAG	2 cut(s)	260, 278
Eco72I	CACGTG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	458
EcoT14I	CCWWGG	2 cut(s)	90, 169
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	2 cut(s)	90, 169
FaeI	CATG	5 cut(s)	19, 235, 274, 514, 531
FaiI	YATR	6 cut(s)	17, 54, 233, 272, 512, 529
FatI	CATG	5 cut(s)	15, 231, 270, 510, 527
Fnu4HI	GCNGC	6 cut(s)	49, 57, 196, 224, 355, 366
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	6 cut(s)	49, 57, 196, 224, 355, 366
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	6 cut(s)	49, 57, 196, 224, 355, 366
HaeIII	GGCC	3 cut(s)	89, 186, 354
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	5 cut(s)	19, 235, 274, 514, 531
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	2 cut(s)	163, 209
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	419, 493
Hpy188I	TCNGA	2 cut(s)	251, 462
Hpy188III	TCNNGA	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	48, 56
HpyF10VI	GCNNNNNNNGC	5 cut(s)	192, 211, 220, 280, 398
HpyF3I	CTNAG	2 cut(s)	393, 427
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	19, 235, 274, 514, 531
HspAI	GCGC	1 cut(s)	401
KpnI	GGTACC	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	178, 246, 251, 277, 466
Lsp1109I	GCAGC	5 cut(s)	60, 68, 207, 235, 352
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	5 cut(s)	180, 248, 253, 279, 468
MboI	GATC	5 cut(s)	178, 246, 251, 277, 466
MboII	GAAGA	2 cut(s)	188, 409
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	441
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	2 cut(s)	95, 505
MluNI	TGGCCA	1 cut(s)	186
MnlI	CCTC	2 cut(s)	79, 509
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	192, 211, 220, 280, 398
NdeII	GATC	5 cut(s)	178, 246, 251, 277, 466
NlaIII	CATG	5 cut(s)	19, 235, 274, 514, 531
NlaIV	GGNNCC	2 cut(s)	38, 263
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	3 cut(s)	19, 235, 274
PaeI	GCATGC	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	89
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	163, 209
PkrI	GCNGC	6 cut(s)	50, 58, 197, 225, 356, 367
PmaCI	CACGTG	1 cut(s)	310
PmlI	CACGTG	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	310
PscI	ACATGT	1 cut(s)	231
PspCI	CACGTG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	38, 263
PspPI	GGNCC	2 cut(s)	261, 491
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	4 cut(s)	11, 38, 350, 377
RsaNI	GTAC	4 cut(s)	10, 37, 349, 376
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	6 cut(s)	49, 57, 196, 224, 355, 366
Sau3AI	GATC	5 cut(s)	178, 246, 251, 277, 466
Sau96I	GGNCC	2 cut(s)	261, 491
SduI	GDGCHC	1 cut(s)	441
SinI	GGWCC	2 cut(s)	261, 491
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	2 cut(s)	95, 505
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	355, 382
StuI	AGGCCT	1 cut(s)	89
StyI	CCWWGG	2 cut(s)	90, 169
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	95, 505
TatI	WGTACW	2 cut(s)	9, 375
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	163, 209
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	5 cut(s)	48, 56, 195, 223, 365
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	2 cut(s)	274, 466
VpaK11BI	GGWCC	2 cut(s)	261, 491
XceI	RCATGY	3 cut(s)	19, 235, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.