Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Reverse (-)

8949028 .. 8954643

Gene Structure 5616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1121500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAAGAGGGAGGGTGGAATTGAAGAGGATAGAGAACAAGATCAACAGACAGGTGACCTTTGCGAAGAGAAGGAACGGACTATTGAAGAAAGCCTACGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCACGCTCAAAACTCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCGGAGACAAATATATCAACAAGGGAGGCCTTGGAGTTGAGTAGCCAGCAGGAGTATTTGAAGCTCAAGGCACGTTTTGAAGCCCTACAACGAAACCAAAGGAATCTCCTTGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGATCTTGAATCACTTGAAAGGCAGCTGGATATGTCGCTGAAGCAGATCAGATCCACACGGACCCAATGTATGCTGGATCAGCTCACAGATCTTCAGCGAAAGGAGCACATGCTAAACGAAGCAAATAAGACCCTGAAAGAAAGGTTGTTCGAGGGATACCATGCACTCCAACTGAATGCAAATGCCGACGAGTACGGCCGCCAACAAGCTCAGGCGGCCCAGGGTGATGTCTTCTTCCATCCCTTAGACTGCGAGCCGACTTTACAGATTGGATATCAGAATGATCCAATATCGGTGGTGACAGCAGGTCCAAGCGTGAGTAATTACATGGGAGGATGGTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

240

Amino Acids

27.3

Weight (kDa)

8.53

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 172	1.6e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	668
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	2 cut(s)	571, 587
AclWI	GGATC	3 cut(s)	417, 456, 650
AcoI	YGGCCR	1 cut(s)	568
AcuI	CTGAAG	2 cut(s)	431, 449
AfaI	GTAC	3 cut(s)	164, 209, 566
AgsI	TTSAA	7 cut(s)	25, 88, 183, 292, 311, 380, 389
AhdI	GACNNNNNGTC	1 cut(s)	678
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	6 cut(s)	103, 160, 295, 397, 454, 581
AluI	AGCT	6 cut(s)	103, 160, 295, 397, 454, 581
Alw21I	GWGCWC	2 cut(s)	232, 480
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	417, 456, 650
AoxI	GGCC	4 cut(s)	258, 355, 568, 588
ApeKI	GCWGC	2 cut(s)	366, 394
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	4 cut(s)	356, 432, 589, 680
AsuHPI	GGTGA	3 cut(s)	67, 608, 682
AvaII	GGWCC	2 cut(s)	432, 680
BanI	GGYRCC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	595
Bbv12I	GWGCWC	2 cut(s)	232, 480
BbvI	GCAGC	2 cut(s)	378, 406
BccI	CCATC	2 cut(s)	618, 702
BceAI	ACGGC	1 cut(s)	583
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	521
BglII	AGATCT	3 cut(s)	349, 373, 460
BisI	GCNGC	4 cut(s)	367, 395, 571, 588
BlsI	GCNGC	4 cut(s)	368, 396, 572, 589
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	2 cut(s)	432, 680
BmeRI	GACNNNNNGTC	1 cut(s)	678
BmgT120I	GGNCC	4 cut(s)	356, 432, 589, 680
BmiI	GGNNCC	2 cut(s)	209, 434
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	595
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	2 cut(s)	221, 281
BsaJI	CCNNGG	5 cut(s)	123, 261, 340, 591, 592
BsaWI	WCCGGW	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	5 cut(s)	123, 261, 340, 591, 592
BseGI	GGATG	2 cut(s)	610, 713
BseMII	CTCAG	1 cut(s)	596
BseX3I	CGGCCG	1 cut(s)	568
BseXI	GCAGC	2 cut(s)	378, 406
Bsh1285I	CGRYCG	1 cut(s)	571
BshFI	GGCC	4 cut(s)	260, 357, 570, 590
BshNI	GGYRCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	571
BsiHKAI	GWGCWC	2 cut(s)	232, 480
BsiSI	CCGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	4 cut(s)	260, 357, 570, 590
Bsp1286I	GDGCHC	2 cut(s)	232, 480
Bsp143I	GATC	8 cut(s)	42, 349, 373, 417, 422, 448, 460, 655
BspACI	CCGC	2 cut(s)	571, 587
BspANI	GGCC	4 cut(s)	260, 357, 570, 590
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	209, 434
BspMI	ACCTGC	1 cut(s)	668
BspPI	GGATC	3 cut(s)	417, 456, 650
BspT107I	GGYRCC	1 cut(s)	207
BssECI	CCNNGG	5 cut(s)	123, 261, 340, 591, 592
BssMI	GATC	8 cut(s)	42, 349, 373, 417, 422, 448, 460, 655
BssT1I	CCWWGG	2 cut(s)	261, 340
Bst2UI	CCWGG	1 cut(s)	593
Bst6I	CTCTTC	2 cut(s)	20, 62
BstC8I	GCNNGC	3 cut(s)	188, 278, 626
BstDEI	CTNAG	3 cut(s)	362, 582, 616
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	610, 713
BstKTI	GATC	8 cut(s)	45, 352, 376, 420, 425, 451, 463, 658
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	8 cut(s)	42, 349, 373, 417, 422, 448, 460, 655
BstMCI	CGRYCG	1 cut(s)	571
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 363, 451, 475, 587
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	484
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	378, 406
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	4 cut(s)	349, 373, 422, 460
BstYI	RGATCY	4 cut(s)	349, 373, 422, 460
BstZI	CGGCCG	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	4 cut(s)	260, 357, 570, 590
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	610, 713
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	3 cut(s)	188, 278, 626
Cfr13I	GGNCC	4 cut(s)	356, 432, 589, 680
Csp6I	GTAC	3 cut(s)	163, 208, 565
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	4 cut(s)	481, 533, 700, 717
CviQI	GTAC	3 cut(s)	163, 208, 565
DdeI	CTNAG	3 cut(s)	362, 582, 616
DpnI	GATC	8 cut(s)	44, 351, 375, 419, 424, 450, 462, 657
DpnII	GATC	8 cut(s)	42, 349, 373, 417, 422, 448, 460, 655
DriI	GACNNNNNGTC	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	568
EagI	CGGCCG	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	20, 62
Eam1105I	GACNNNNNGTC	1 cut(s)	678
EarI	CTCTTC	2 cut(s)	20, 62
EclXI	CGGCCG	1 cut(s)	568
Eco130I	CCWWGG	2 cut(s)	261, 340
Eco147I	AGGCCT	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	647
Eco47I	GGWCC	2 cut(s)	432, 680
Eco52I	CGGCCG	1 cut(s)	568
Eco57I	CTGAAG	2 cut(s)	431, 449
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	647
EcoT14I	CCWWGG	2 cut(s)	261, 340
ErhI	CCWWGG	2 cut(s)	261, 340
FaeI	CATG	4 cut(s)	484, 536, 703, 720
FaiI	YATR	8 cut(s)	225, 245, 404, 443, 482, 534, 701, 718
FatI	CATG	4 cut(s)	480, 532, 699, 716
Fnu4HI	GCNGC	4 cut(s)	367, 395, 571, 588
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	4 cut(s)	367, 395, 571, 588
GluI	GCNGC	4 cut(s)	367, 395, 571, 588
HaeIII	GGCC	4 cut(s)	260, 357, 570, 590
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	4 cut(s)	484, 536, 703, 720
HinfI	GANTC	2 cut(s)	334, 380
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	3 cut(s)	67, 608, 682
Hpy188I	TCNGA	2 cut(s)	422, 651
Hpy188III	TCNNGA	2 cut(s)	200, 377
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	4 cut(s)	174, 219, 536, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 363, 451, 475, 587
HpyF3I	CTNAG	3 cut(s)	362, 582, 616
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	4 cut(s)	484, 536, 703, 720
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	8 cut(s)	42, 349, 373, 417, 422, 448, 460, 655
LmnI	GCTCC	2 cut(s)	227, 475
Lsp1109I	GCAGC	2 cut(s)	378, 406
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	2 cut(s)	55, 670
MalI	GATC	8 cut(s)	44, 351, 375, 419, 424, 450, 462, 657
MboI	GATC	8 cut(s)	42, 349, 373, 417, 422, 448, 460, 655
MboII	GAAGA	9 cut(s)	18, 37, 79, 100, 133, 359, 455, 595, 598
MflI	RGATCY	4 cut(s)	349, 373, 422, 460
MhlI	GDGCHC	2 cut(s)	232, 480
MluCI	AATT	2 cut(s)	20, 694
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	9 cut(s)	6, 21, 118, 146, 198, 250, 369, 517, 698
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	5 cut(s)	128, 363, 451, 475, 587
NdeII	GATC	8 cut(s)	42, 349, 373, 417, 422, 448, 460, 655
NlaIII	CATG	4 cut(s)	484, 536, 703, 720
NlaIV	GGNNCC	2 cut(s)	209, 434
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	55, 670
NspI	RCATGY	1 cut(s)	484
PasI	CCCWGGG	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	334, 380
PkrI	GCNGC	4 cut(s)	368, 396, 572, 589
Psp6I	CCWGG	1 cut(s)	591
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	2 cut(s)	209, 434
PspPI	GGNCC	4 cut(s)	356, 432, 589, 680
PsuI	RGATCY	4 cut(s)	349, 373, 422, 460
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	164, 209, 566
RsaNI	GTAC	3 cut(s)	163, 208, 565
SatI	GCNGC	4 cut(s)	367, 395, 571, 588
Sau3AI	GATC	8 cut(s)	42, 349, 373, 417, 422, 448, 460, 655
Sau96I	GGNCC	4 cut(s)	356, 432, 589, 680
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	2 cut(s)	232, 480
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	2 cut(s)	432, 680
SmlI	CTYRAG	2 cut(s)	200, 296
SmoI	CTYRAG	2 cut(s)	200, 296
Sse9I	AATT	2 cut(s)	20, 694
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	571, 587
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	2 cut(s)	261, 340
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	522
TasI	AATT	2 cut(s)	20, 694
TauI	GCSGC	2 cut(s)	573, 590
TfiI	GAWTC	2 cut(s)	334, 380
TseFI	GTSAC	2 cut(s)	55, 670
TseI	GCWGC	2 cut(s)	366, 394
Tsp45I	GTSAC	2 cut(s)	55, 670
TspGWI	ACGGA	3 cut(s)	93, 97, 445
VpaK11BI	GGWCC	2 cut(s)	432, 680
XceI	RCATGY	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.