Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Forward (+)

23749662 .. 23754532

Gene Structure 4871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G223600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGGAGGGGGAGAGTGGAGCTGAAGAGGATTGAGAACAAGATCAACAGGCAGGTGACCTTTGCGAAGCGAAGGAACGGGCTTTTGAAGAAAGCCTACGAGCTTTCCGTTCTTTGCGAGGCTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGCTCAAGCATGCTCAAAACTCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAGACAAATGTATCTGCAAGGGAGGCCTTGGAATTGAGTAGCCAGCAGGAGTATTTGAAGCTCAAGGCACGTTATGAAGCCCTACAACGAAACCAAAGGAATCTTCTTGGAGAAGATCTTGGCCCTTTAAGCAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTGGATATGTCTCTGAAGCAGATCAGATCGACACGGACCCAATGCATGCTGGATCAGCTCACAGATCTTCAGCGAAAGGAGCACATGCTAAATGAAGCAAATAAGACCCTGAAACAAAGGTTGTTTGAGGGATACCATGTAAATTCACTCCAAATGAATCCAAATGCTGACGAGTACGGCCGGCAACAAACTCAAGCTCATGGCGATGGCTTCTTCCATCCCTTAGACTGCGAGCCGACGTTACAGATTGGATACCAGAACGATCCAATATCAGTGGTCACAGCAGGTCCAAGCGTGAGTAATTACATGGCAGGATGGTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

241

Amino Acids

27.54

Weight (kDa)

8.73

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	2 cut(s)	43, 671
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AclWI	GGATC	2 cut(s)	456, 653
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	3 cut(s)	44, 431, 449
AfaI	GTAC	3 cut(s)	164, 209, 572
AgsI	TTSAA	4 cut(s)	88, 292, 380, 389
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	9 cut(s)	22, 103, 160, 180, 295, 376, 397, 454, 593
AluI	AGCT	9 cut(s)	22, 103, 160, 180, 295, 376, 397, 454, 593
Alw21I	GWGCWC	2 cut(s)	232, 480
Alw26I	GTCTC	2 cut(s)	230, 411
AlwI	GGATC	2 cut(s)	456, 653
AoxI	GGCC	3 cut(s)	258, 355, 574
ApeKI	GCWGC	2 cut(s)	366, 394
ApoI	RAATTY	1 cut(s)	538
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	356, 432, 683
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	432, 683
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BanI	GGYRCC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
Bbv12I	GWGCWC	2 cut(s)	232, 480
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	378, 406
BccI	CCATC	3 cut(s)	596, 621, 705
BceAI	ACGGC	1 cut(s)	589
BciVI	GTATCC	2 cut(s)	521, 641
BcoDI	GTCTC	2 cut(s)	230, 411
BfuAI	ACCTGC	2 cut(s)	43, 671
BfuI	GTATCC	2 cut(s)	521, 641
BglII	AGATCT	2 cut(s)	349, 460
BisI	GCNGC	2 cut(s)	367, 395
BlsI	GCNGC	2 cut(s)	368, 396
Bme18I	GGWCC	2 cut(s)	432, 683
BmgT120I	GGNCC	3 cut(s)	356, 432, 683
BmiI	GGNNCC	2 cut(s)	209, 434
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	4 cut(s)	166, 221, 281, 573
BsaJI	CCNNGG	1 cut(s)	261
Bse118I	RCCGGY	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	613, 716
BseMII	CTCAG	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	574
BseXI	GCAGC	2 cut(s)	378, 406
Bsh1285I	CGRYCG	1 cut(s)	577
BshFI	GGCC	3 cut(s)	260, 357, 576
BshNI	GGYRCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	577
BsiHKAI	GWGCWC	2 cut(s)	232, 480
BsiSI	CCGG	1 cut(s)	577
BsmAI	GTCTC	2 cut(s)	230, 411
BsnI	GGCC	3 cut(s)	260, 357, 576
Bsp1286I	GDGCHC	2 cut(s)	232, 480
Bsp143I	GATC	7 cut(s)	42, 349, 417, 422, 448, 460, 658
BspANI	GGCC	3 cut(s)	260, 357, 576
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	209, 434
BspMI	ACCTGC	2 cut(s)	43, 671
BspPI	GGATC	2 cut(s)	456, 653
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	576
BssAI	RCCGGY	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	7 cut(s)	42, 349, 417, 422, 448, 460, 658
BssT1I	CCWWGG	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	5 cut(s)	188, 278, 443, 578, 629
BstDEI	CTNAG	2 cut(s)	123, 619
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	613, 716
BstKTI	GATC	7 cut(s)	45, 352, 420, 425, 451, 463, 661
BstMAI	GTCTC	2 cut(s)	230, 411
BstMBI	GATC	7 cut(s)	42, 349, 417, 422, 448, 460, 658
BstMCI	CGRYCG	1 cut(s)	577
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 257, 363, 451, 475
BstNSI	RCATGY	3 cut(s)	190, 445, 484
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	378, 406
BstX2I	RGATCY	2 cut(s)	349, 460
BstYI	RGATCY	2 cut(s)	349, 460
BstZI	CGGCCG	1 cut(s)	574
BsuI	GTATCC	2 cut(s)	521, 641
BsuRI	GGCC	3 cut(s)	260, 357, 576
BtgZI	GCGATG	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	613, 716
BtsIMutI	CAGTG	1 cut(s)	675
BveI	ACCTGC	2 cut(s)	43, 671
Cac8I	GCNNGC	5 cut(s)	188, 278, 443, 578, 629
Cfr10I	RCCGGY	1 cut(s)	576
Cfr13I	GGNCC	3 cut(s)	356, 432, 683
Csp6I	GTAC	3 cut(s)	163, 208, 571
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	7 cut(s)	187, 442, 481, 533, 596, 703, 720
CviQI	GTAC	3 cut(s)	163, 208, 571
DdeI	CTNAG	2 cut(s)	123, 619
DpnI	GATC	7 cut(s)	44, 351, 419, 424, 450, 462, 660
DpnII	GATC	7 cut(s)	42, 349, 417, 422, 448, 460, 658
EaeI	YGGCCR	1 cut(s)	574
EagI	CGGCCG	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	432, 683
Eco52I	CGGCCG	1 cut(s)	574
Eco57I	CTGAAG	3 cut(s)	44, 431, 449
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	7 cut(s)	190, 445, 484, 536, 599, 706, 723
FatI	CATG	7 cut(s)	186, 441, 480, 532, 595, 702, 719
Fnu4HI	GCNGC	2 cut(s)	367, 395
FokI	GGATG	1 cut(s)	600
Fsp4HI	GCNGC	2 cut(s)	367, 395
GluI	GCNGC	2 cut(s)	367, 395
HaeIII	GGCC	3 cut(s)	260, 357, 576
HapII	CCGG	1 cut(s)	577
Hin1II	CATG	7 cut(s)	190, 445, 484, 536, 599, 706, 723
HinfI	GANTC	3 cut(s)	334, 380, 553
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	411, 422
Hpy188III	TCNNGA	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	637
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	2 cut(s)	304, 635
HpyCH4V	TGCA	4 cut(s)	174, 219, 251, 441
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 257, 363, 451, 475
HpyF3I	CTNAG	2 cut(s)	123, 619
HpySE526I	ACGT	2 cut(s)	304, 635
Hsp92II	CATG	7 cut(s)	190, 445, 484, 536, 599, 706, 723
KpnI	GGTACC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	576
KroNI	GCCGGC	1 cut(s)	578
Kzo9I	GATC	7 cut(s)	42, 349, 417, 422, 448, 460, 658
LmnI	GCTCC	3 cut(s)	19, 227, 475
Lsp1109I	GCAGC	2 cut(s)	378, 406
MaeII	ACGT	2 cut(s)	304, 635
MaeIII	GTNAC	3 cut(s)	55, 636, 673
MalI	GATC	7 cut(s)	44, 351, 419, 424, 450, 462, 660
MboI	GATC	7 cut(s)	42, 349, 417, 422, 448, 460, 658
MboII	GAAGA	7 cut(s)	37, 100, 133, 329, 359, 455, 601
MflI	RGATCY	2 cut(s)	349, 460
MhlI	GDGCHC	2 cut(s)	232, 480
MluCI	AATT	3 cut(s)	266, 538, 697
MnlI	CCTC	7 cut(s)	21, 112, 118, 146, 198, 250, 517
Mph1103I	ATGCAT	1 cut(s)	443
MroNI	GCCGGC	1 cut(s)	576
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	5 cut(s)	128, 257, 363, 451, 475
NaeI	GCCGGC	1 cut(s)	578
NdeII	GATC	7 cut(s)	42, 349, 417, 422, 448, 460, 658
NgoMIV	GCCGGC	1 cut(s)	576
NlaIII	CATG	7 cut(s)	190, 445, 484, 536, 599, 706, 723
NlaIV	GGNNCC	2 cut(s)	209, 434
NmuCI	GTSAC	2 cut(s)	55, 673
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	3 cut(s)	190, 445, 484
PaeI	GCATGC	2 cut(s)	190, 445
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdiI	GCCGGC	1 cut(s)	578
PfeI	GAWTC	3 cut(s)	334, 380, 553
PkrI	GCNGC	2 cut(s)	368, 396
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	209, 434
PspPI	GGNCC	3 cut(s)	356, 432, 683
PsuI	RGATCY	2 cut(s)	349, 460
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	164, 209, 572
RsaNI	GTAC	3 cut(s)	163, 208, 571
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	2 cut(s)	367, 395
Sau3AI	GATC	7 cut(s)	42, 349, 417, 422, 448, 460, 658
Sau96I	GGNCC	3 cut(s)	356, 432, 683
SduI	GDGCHC	2 cut(s)	232, 480
SinI	GGWCC	2 cut(s)	432, 683
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	4 cut(s)	181, 200, 296, 588
SmoI	CTYRAG	4 cut(s)	181, 200, 296, 588
SphI	GCATGC	2 cut(s)	190, 445
Sse9I	AATT	3 cut(s)	266, 538, 697
SseBI	AGGCCT	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	261
TaiI	ACGT	2 cut(s)	307, 638
TaqI	TCGA	1 cut(s)	425
TasI	AATT	3 cut(s)	266, 538, 697
TfiI	GAWTC	3 cut(s)	334, 380, 553
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	675
TseFI	GTSAC	2 cut(s)	55, 673
TseI	GCWGC	2 cut(s)	366, 394
Tsp45I	GTSAC	2 cut(s)	55, 673
TspDTI	ATGAA	3 cut(s)	324, 504, 566
TspGWI	ACGGA	2 cut(s)	97, 445
TspRI	CASTG	1 cut(s)	675
VpaK11BI	GGWCC	2 cut(s)	432, 683
XapI	RAATTY	1 cut(s)	538
XceI	RCATGY	3 cut(s)	190, 445, 484
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.