Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Forward (+)

51786023 .. 51791646

Gene Structure 5624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G025620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGGAGGGGGAGAGTTGAGCTGAAGAGGATTGAGAACAAGATCAACAGGCAGGTGACCTTTGCAAAGAGAAGGAACGGACTATTGAAGAAAGCCTACGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACACTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCGGAGACAAATGTATCTACAAGGGAGGCCTTGGAATTGAGTAGCCAGCAGGAGTATTTGAAGCTCAAGGCACGTTATGAAGCCCTACAACGAAACCAAAGGAATCTTCTTGGAGAAGATCTTGGCCCTTTAAGTAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTGGATCTGTCATTGAAGCAGATCAGATCAACACGGACCCAATGCATGCTGGATCAGCTCACAGATCTTCAGCGAAAGGAACACATGCTTAATGAAGCAAACAGGACACTGAAACAAAGGTTGTTTGAGGGATACAATGTACATCAACTCCAACTGAATGCAAATGCTGAGGATGTGGGATATGGCCGGCAACAAGCTCATCATCAACCTCAGGGCGAGGGCTTCTTCCAACCCTTAGAGTGCGAGCCCACGTTACAAATTGGGTATCACCAGAATGATCCGATACAAGTTGTGACGGCCGGGCCGAGCGTGAATTACATGGGAGGATGGTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

244

Amino Acids

28.08

Weight (kDa)

8.74

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 173	5.7e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AclWI	GGATC	3 cut(s)	408, 456, 668
AcoI	YGGCCR	2 cut(s)	580, 693
AcuI	CTGAAG	2 cut(s)	44, 449
AfaI	GTAC	3 cut(s)	164, 209, 537
AgsI	TTSAA	6 cut(s)	88, 183, 292, 380, 389, 412
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	8 cut(s)	22, 103, 160, 295, 376, 397, 454, 593
AluI	AGCT	8 cut(s)	22, 103, 160, 295, 376, 397, 454, 593
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	408, 456, 668
AoxI	GGCC	5 cut(s)	258, 355, 580, 693, 698
ApeKI	GCWGC	1 cut(s)	394
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	356, 432, 698
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	2 cut(s)	67, 656
AvaII	GGWCC	1 cut(s)	432
AxyI	CCTNAGG	1 cut(s)	606
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	645
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
Bbv12I	GWGCWC	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	717
BceAI	ACGGC	1 cut(s)	708
BciVI	GTATCC	1 cut(s)	521
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	521
BglII	AGATCT	2 cut(s)	349, 460
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	697
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	3 cut(s)	356, 432, 698
BmiI	GGNNCC	2 cut(s)	209, 434
BmrFI	CCNGG	1 cut(s)	697
BmsI	GCATC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	221, 281
BpuMI	CCSGG	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	123, 261
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bse118I	RCCGGY	1 cut(s)	582
Bse21I	CCTNAGG	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	123, 261
BseGI	GGATG	2 cut(s)	574, 728
BseMII	CTCAG	2 cut(s)	555, 620
BseX3I	CGGCCG	1 cut(s)	693
BseXI	GCAGC	1 cut(s)	406
Bsh1285I	CGRYCG	1 cut(s)	696
BshFI	GGCC	5 cut(s)	260, 357, 582, 695, 700
BshNI	GGYRCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	233, 583, 696
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	5 cut(s)	260, 357, 582, 695, 700
Bsp1286I	GDGCHC	2 cut(s)	232, 645
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	8 cut(s)	42, 349, 400, 417, 422, 448, 460, 673
BspANI	GGCC	5 cut(s)	260, 357, 582, 695, 700
BspCNI	CTCAG	2 cut(s)	556, 619
BspLI	GGNNCC	2 cut(s)	209, 434
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	408, 456, 668
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	582
BssECI	CCNNGG	2 cut(s)	123, 261
BssMI	GATC	8 cut(s)	42, 349, 400, 417, 422, 448, 460, 673
BssT1I	CCWWGG	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	5 cut(s)	188, 278, 443, 584, 641
BstDEI	CTNAG	3 cut(s)	564, 606, 631
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	574, 728
BstKTI	GATC	8 cut(s)	45, 352, 403, 420, 425, 451, 463, 676
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	8 cut(s)	42, 349, 400, 417, 422, 448, 460, 673
BstMCI	CGRYCG	1 cut(s)	696
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 451
BstNSI	RCATGY	3 cut(s)	190, 445, 484
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	695
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	3 cut(s)	349, 400, 460
BstYI	RGATCY	3 cut(s)	349, 400, 460
BstZI	CGGCCG	1 cut(s)	693
Bsu36I	CCTNAGG	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	5 cut(s)	260, 357, 582, 695, 700
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	574, 728
BtsIMutI	CAGTG	1 cut(s)	503
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	5 cut(s)	188, 278, 443, 584, 641
Cfr10I	RCCGGY	1 cut(s)	582
Cfr13I	GGNCC	3 cut(s)	356, 432, 698
Csp6I	GTAC	3 cut(s)	163, 208, 536
CviAII	CATG	5 cut(s)	187, 442, 481, 715, 732
CviQI	GTAC	3 cut(s)	163, 208, 536
DdeI	CTNAG	3 cut(s)	564, 606, 631
DpnI	GATC	8 cut(s)	44, 351, 402, 419, 424, 450, 462, 675
DpnII	GATC	8 cut(s)	42, 349, 400, 417, 422, 448, 460, 673
EaeI	YGGCCR	2 cut(s)	580, 693
EagI	CGGCCG	1 cut(s)	693
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	432
Eco52I	CGGCCG	1 cut(s)	693
Eco57I	CTGAAG	2 cut(s)	44, 449
Eco81I	CCTNAGG	1 cut(s)	606
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	5 cut(s)	190, 445, 484, 718, 735
FaiI	YATR	8 cut(s)	188, 225, 309, 443, 482, 579, 716, 733
FatI	CATG	5 cut(s)	186, 441, 480, 714, 731
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	1 cut(s)	581
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	395
HaeIII	GGCC	5 cut(s)	260, 357, 582, 695, 700
HapII	CCGG	3 cut(s)	233, 583, 696
Hin1II	CATG	5 cut(s)	190, 445, 484, 718, 735
HinfI	GANTC	2 cut(s)	334, 380
HpaII	CCGG	3 cut(s)	233, 583, 696
HphI	GGTGA	2 cut(s)	67, 656
Hpy188I	TCNGA	2 cut(s)	422, 678
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	2 cut(s)	304, 647
HpyCH4V	TGCA	5 cut(s)	65, 174, 219, 441, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 451
HpyF3I	CTNAG	3 cut(s)	564, 606, 631
HpySE526I	ACGT	2 cut(s)	304, 647
Hsp92II	CATG	5 cut(s)	190, 445, 484, 718, 735
KpnI	GGTACC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	582
KroNI	GCCGGC	1 cut(s)	584
Kzo9I	GATC	8 cut(s)	42, 349, 400, 417, 422, 448, 460, 673
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	2 cut(s)	304, 647
MaeIII	GTNAC	3 cut(s)	55, 648, 688
MalI	GATC	8 cut(s)	44, 351, 402, 419, 424, 450, 462, 675
MboI	GATC	8 cut(s)	42, 349, 400, 417, 422, 448, 460, 673
MboII	GAAGA	7 cut(s)	37, 100, 133, 329, 359, 455, 613
MflI	RGATCY	3 cut(s)	349, 400, 460
MhlI	GDGCHC	2 cut(s)	232, 645
MluCI	AATT	3 cut(s)	266, 654, 709
MmeI	TCCRAC	2 cut(s)	571, 649
Mph1103I	ATGCAT	1 cut(s)	443
MroNI	GCCGGC	1 cut(s)	582
MseI	TTAA	2 cut(s)	362, 486
MslI	CAYNNNNRTG	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	3 cut(s)	233, 583, 696
MspR9I	CCNGG	1 cut(s)	697
Mva1269I	GAATGC	1 cut(s)	559
MwoI	GCNNNNNNNGC	2 cut(s)	128, 451
NaeI	GCCGGC	1 cut(s)	584
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	8 cut(s)	42, 349, 400, 417, 422, 448, 460, 673
NgoMIV	GCCGGC	1 cut(s)	582
NlaIII	CATG	5 cut(s)	190, 445, 484, 718, 735
NlaIV	GGNNCC	2 cut(s)	209, 434
NmeAIII	GCCGAG	2 cut(s)	148, 726
NmuCI	GTSAC	2 cut(s)	55, 688
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	3 cut(s)	190, 445, 484
PaeI	GCATGC	2 cut(s)	190, 445
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 698
PctI	GAATGC	1 cut(s)	559
PdiI	GCCGGC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	334, 380
PkrI	GCNGC	1 cut(s)	396
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	209, 434
PspPI	GGNCC	3 cut(s)	356, 432, 698
PsuI	RGATCY	3 cut(s)	349, 400, 460
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	164, 209, 537
RsaNI	GTAC	3 cut(s)	163, 208, 536
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	362, 486
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	8 cut(s)	42, 349, 400, 417, 422, 448, 460, 673
Sau96I	GGNCC	3 cut(s)	356, 432, 698
ScrFI	CCNGG	1 cut(s)	697
SduI	GDGCHC	2 cut(s)	232, 645
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	2 cut(s)	200, 296
SmoI	CTYRAG	2 cut(s)	200, 296
SphI	GCATGC	2 cut(s)	190, 445
Sse9I	AATT	3 cut(s)	266, 654, 709
SseBI	AGGCCT	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	695
StyI	CCWWGG	1 cut(s)	261
TaiI	ACGT	2 cut(s)	307, 650
TasI	AATT	3 cut(s)	266, 654, 709
TatI	WGTACW	1 cut(s)	535
TfiI	GAWTC	2 cut(s)	334, 380
Tru1I	TTAA	2 cut(s)	362, 486
Tru9I	TTAA	2 cut(s)	362, 486
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	2 cut(s)	55, 688
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	2 cut(s)	55, 688
TspDTI	ATGAA	2 cut(s)	324, 504
TspGWI	ACGGA	3 cut(s)	93, 97, 445
TspRI	CASTG	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	432
XceI	RCATGY	3 cut(s)	190, 445, 484
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.