Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Forward (+)

25998776 .. 26004694

Gene Structure 5919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23530.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGGAGGGGGAGAGTAGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACCTTTGCAAAGAGAAGGAACGGACTATTGAAGAAAGCCTACGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACACTGGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAGACAAATGAATTGAGTAGCCAACAGGAGTATTTGAAGCTCAAGGCACGTTATGAAGCCCTACAAAGAAACCAAAGGAATCTTCTTGGAGAAGATCTTGGCCCTTTGAGCAGCAAGGAGCTCGAATCACTTGAAAGGCAGCTGGATATGTCACTGAAGCAGATCAGATCAACACGGACCCAATGCATGCTGGATCAGCTCACAGATCTTCAGCGAAAGGAACACTTGCTTAACGAGGCAAACAGGACACTGAAACAAAGGTTGTTTGAGGGATACCATCATCAACTCCAACTGAATGCAAATGCTGAGGAAGTGGCATATGGCCGGCAAGAAGCTCATCAGCCTCAGGGCGATGGCTTCTTCCAAGCCTTAGAGTGCGAGCCCACATTACAAATTGGGTATCACCAGAATGATCCGATTCAAGTCGTGACGGCCGGGCCGAGCGTGAATTACATGGGAGGATGGTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

236

Amino Acids

27.1

Weight (kDa)

8.53

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	29 - 111	2.2e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AclWI	GGATC	2 cut(s)	435, 641
AcoI	YGGCCR	2 cut(s)	556, 666
AcuI	CTGAAG	3 cut(s)	44, 410, 428
AfaI	GTAC	2 cut(s)	164, 209
AgsI	TTSAA	5 cut(s)	88, 183, 271, 368, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	8 cut(s)	22, 103, 160, 274, 355, 376, 433, 569
AluI	AGCT	8 cut(s)	22, 103, 160, 274, 355, 376, 433, 569
Alw21I	GWGCWC	2 cut(s)	232, 357
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	435, 641
AoxI	GGCC	4 cut(s)	334, 556, 666, 671
ApeKI	GCWGC	2 cut(s)	345, 373
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	335, 411, 671
AsuC2I	CCSGG	1 cut(s)	670
AsuHPI	GGTGA	2 cut(s)	67, 629
AvaII	GGWCC	1 cut(s)	411
AxyI	CCTNAGG	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	357, 618
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
Bbv12I	GWGCWC	2 cut(s)	232, 357
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	357, 385
BccI	CCATC	3 cut(s)	519, 581, 690
BceAI	ACGGC	1 cut(s)	681
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciVI	GTATCC	1 cut(s)	500
BcnI	CCSGG	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	500
BglII	AGATCT	2 cut(s)	328, 439
BisI	GCNGC	2 cut(s)	346, 374
BlsI	GCNGC	2 cut(s)	347, 375
Bme1390I	CCNGG	1 cut(s)	670
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	3 cut(s)	335, 411, 671
BmiI	GGNNCC	2 cut(s)	209, 413
BmrFI	CCNGG	1 cut(s)	670
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	204
Bse21I	CCTNAGG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	701
BseMII	CTCAG	2 cut(s)	531, 593
BseNI	ACTGG	1 cut(s)	204
BseX3I	CGGCCG	1 cut(s)	666
BseXI	GCAGC	2 cut(s)	357, 385
Bsh1285I	CGRYCG	1 cut(s)	669
BshFI	GGCC	4 cut(s)	336, 558, 668, 673
BshNI	GGYRCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	669
BsiHKAI	GWGCWC	2 cut(s)	232, 357
BsiSI	CCGG	2 cut(s)	559, 669
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	4 cut(s)	336, 558, 668, 673
Bsp1286I	GDGCHC	3 cut(s)	232, 357, 618
Bsp143I	GATC	7 cut(s)	42, 328, 396, 401, 427, 439, 646
BspANI	GGCC	4 cut(s)	336, 558, 668, 673
BspCNI	CTCAG	2 cut(s)	532, 592
BspLI	GGNNCC	2 cut(s)	209, 413
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	435, 641
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	7 cut(s)	42, 328, 396, 401, 427, 439, 646
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	4 cut(s)	188, 422, 560, 614
BstDEI	CTNAG	3 cut(s)	540, 579, 604
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	701
BstKTI	GATC	7 cut(s)	45, 331, 399, 404, 430, 442, 649
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	7 cut(s)	42, 328, 396, 401, 427, 439, 646
BstMCI	CGRYCG	1 cut(s)	669
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 342, 430
BstNSI	RCATGY	2 cut(s)	190, 424
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	668
BstV1I	GCAGC	2 cut(s)	357, 385
BstX2I	RGATCY	2 cut(s)	328, 439
BstYI	RGATCY	2 cut(s)	328, 439
BstZI	CGGCCG	1 cut(s)	666
Bsu36I	CCTNAGG	1 cut(s)	579
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	4 cut(s)	336, 558, 668, 673
BtgZI	GCGATG	2 cut(s)	132, 600
BtsCI	GGATG	1 cut(s)	701
BtsIMutI	CAGTG	3 cut(s)	197, 386, 482
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	188, 422, 560, 614
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	3 cut(s)	335, 411, 671
Csp6I	GTAC	2 cut(s)	163, 208
CviAII	CATG	4 cut(s)	187, 421, 688, 705
CviQI	GTAC	2 cut(s)	163, 208
DdeI	CTNAG	3 cut(s)	540, 579, 604
DpnI	GATC	7 cut(s)	44, 330, 398, 403, 429, 441, 648
DpnII	GATC	7 cut(s)	42, 328, 396, 401, 427, 439, 646
EaeI	YGGCCR	2 cut(s)	556, 666
EagI	CGGCCG	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	355
EclXI	CGGCCG	1 cut(s)	666
Eco24I	GRGCYC	2 cut(s)	357, 618
Eco47I	GGWCC	1 cut(s)	411
Eco52I	CGGCCG	1 cut(s)	666
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	44, 410, 428
Eco81I	CCTNAGG	1 cut(s)	579
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	422
EcoT38I	GRGCYC	2 cut(s)	357, 618
FaeI	CATG	4 cut(s)	190, 424, 691, 708
FaiI	YATR	9 cut(s)	188, 225, 288, 383, 422, 553, 555, 689, 706
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	4 cut(s)	186, 420, 687, 704
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	346, 374
FriOI	GRGCYC	2 cut(s)	357, 618
Fsp4HI	GCNGC	2 cut(s)	346, 374
GluI	GCNGC	2 cut(s)	346, 374
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	336, 558, 668, 673
HapII	CCGG	2 cut(s)	559, 669
Hin1II	CATG	4 cut(s)	190, 424, 691, 708
HinfI	GANTC	3 cut(s)	313, 359, 652
HpaII	CCGG	2 cut(s)	559, 669
HphI	GGTGA	2 cut(s)	67, 629
Hpy188I	TCNGA	2 cut(s)	401, 651
Hpy188III	TCNNGA	1 cut(s)	661
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	65, 174, 219, 420, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 342, 430
HpyF3I	CTNAG	3 cut(s)	540, 579, 604
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	4 cut(s)	190, 424, 691, 708
KpnI	GGTACC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	558
KroNI	GCCGGC	1 cut(s)	560
Kzo9I	GATC	7 cut(s)	42, 328, 396, 401, 427, 439, 646
LmnI	GCTCC	2 cut(s)	227, 352
Lsp1109I	GCAGC	2 cut(s)	357, 385
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	3 cut(s)	55, 384, 661
MalI	GATC	7 cut(s)	44, 330, 398, 403, 429, 441, 648
MboI	GATC	7 cut(s)	42, 328, 396, 401, 427, 439, 646
MboII	GAAGA	7 cut(s)	37, 100, 133, 308, 338, 434, 586
MflI	RGATCY	2 cut(s)	328, 439
MhlI	GDGCHC	3 cut(s)	232, 357, 618
MluCI	AATT	3 cut(s)	245, 627, 682
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	9 cut(s)	21, 118, 146, 198, 463, 496, 535, 588, 686
Mph1103I	ATGCAT	1 cut(s)	422
MroNI	GCCGGC	1 cut(s)	558
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	2 cut(s)	559, 669
MspR9I	CCNGG	1 cut(s)	670
Mva1269I	GAATGC	1 cut(s)	535
MwoI	GCNNNNNNNGC	3 cut(s)	128, 342, 430
NaeI	GCCGGC	1 cut(s)	560
NciI	CCSGG	1 cut(s)	670
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	7 cut(s)	42, 328, 396, 401, 427, 439, 646
NgoMIV	GCCGGC	1 cut(s)	558
NlaIII	CATG	4 cut(s)	190, 424, 691, 708
NlaIV	GGNNCC	2 cut(s)	209, 413
NmeAIII	GCCGAG	2 cut(s)	148, 699
NmuCI	GTSAC	3 cut(s)	55, 384, 661
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	2 cut(s)	190, 424
PaeI	GCATGC	2 cut(s)	190, 424
PaqCI	CACCTGC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 671
PctI	GAATGC	1 cut(s)	535
PdiI	GCCGGC	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	313, 359, 652
PkrI	GCNGC	2 cut(s)	347, 375
Psp124BI	GAGCTC	1 cut(s)	357
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	209, 413
PspPI	GGNCC	3 cut(s)	335, 411, 671
PsuI	RGATCY	2 cut(s)	328, 439
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	164, 209
RsaNI	GTAC	2 cut(s)	163, 208
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	346, 374
Sau3AI	GATC	7 cut(s)	42, 328, 396, 401, 427, 439, 646
Sau96I	GGNCC	3 cut(s)	335, 411, 671
ScrFI	CCNGG	1 cut(s)	670
SduI	GDGCHC	3 cut(s)	232, 357, 618
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	2 cut(s)	190, 424
Sse9I	AATT	3 cut(s)	245, 627, 682
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	668
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	357
TasI	AATT	3 cut(s)	245, 627, 682
TfiI	GAWTC	3 cut(s)	313, 359, 652
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	3 cut(s)	204, 393, 489
TseFI	GTSAC	3 cut(s)	55, 384, 661
TseI	GCWGC	2 cut(s)	345, 373
Tsp45I	GTSAC	3 cut(s)	55, 384, 661
TspDTI	ATGAA	2 cut(s)	258, 303
TspGWI	ACGGA	3 cut(s)	93, 97, 424
TspRI	CASTG	3 cut(s)	204, 393, 489
VpaK11BI	GGWCC	1 cut(s)	411
XceI	RCATGY	2 cut(s)	190, 424
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.