Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035068.1

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Forward (+)

11 .. 658

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035068.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgctggatcagctcacagatcttcagcgaaaggaacacatgcttaatgaagcaaacaggacactgaaacaaaggttgtttgagggatacaatgtacatcaactccaactgaatgcaaatgctgaggatgtgggatatggccggcaacaagctcatcatcaacctcagggcgagggcttcttccaacccttagagtgcgagcccacgttacaaattgggtatcaccagaatgatccgatacaagttgtgacggccgggccgagcgtgaattacatgggaggatggttgccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

97

Amino Acids

11.1

Weight (kDa)

5.35

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	15, 227
AcoI	YGGCCR	2 cut(s)	139, 252
AcuI	CTGAAG	1 cut(s)	8
AfaI	GTAC	1 cut(s)	96
AluBI	AGCT	2 cut(s)	13, 152
AluI	AGCT	2 cut(s)	13, 152
AlwI	GGATC	2 cut(s)	15, 227
AoxI	GGCC	3 cut(s)	139, 252, 257
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	276
BceAI	ACGGC	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse118I	RCCGGY	1 cut(s)	141
Bse21I	CCTNAGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	133, 287
BseMII	CTCAG	2 cut(s)	114, 179
BseX3I	CGGCCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	141, 254, 259
BsiEI	CGRYCG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	142, 255
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	141, 254, 259
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	7, 19, 232
BspANI	GGCC	3 cut(s)	141, 254, 259
BspCNI	CTCAG	2 cut(s)	115, 178
BspPI	GGATC	2 cut(s)	15, 227
BsrFI	RCCGGY	1 cut(s)	141
BsrGI	TGTACA	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	141
BssMI	GATC	3 cut(s)	7, 19, 232
BstAUI	TGTACA	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	143, 200
BstDEI	CTNAG	3 cut(s)	123, 165, 190
BstF5I	GGATG	2 cut(s)	133, 287
BstKTI	GATC	3 cut(s)	10, 22, 235
BstMBI	GATC	3 cut(s)	7, 19, 232
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	3 cut(s)	141, 254, 259
BtsCI	GGATG	2 cut(s)	133, 287
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	143, 200
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	3 cut(s)	40, 274, 291
CviJI	RGCY	7 cut(s)	13, 141, 152, 177, 202, 254, 259
CviKI_1	RGCY	7 cut(s)	13, 141, 152, 177, 202, 254, 259
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	3 cut(s)	123, 165, 190
DpnI	GATC	3 cut(s)	9, 21, 234
DpnII	GATC	3 cut(s)	7, 19, 232
EaeI	YGGCCR	2 cut(s)	139, 252
EagI	CGGCCG	1 cut(s)	252
EclXI	CGGCCG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	8
Eco81I	CCTNAGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	3 cut(s)	43, 277, 294
FaiI	YATR	4 cut(s)	41, 138, 275, 292
FatI	CATG	3 cut(s)	39, 273, 290
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	141, 254, 259
HapII	CCGG	2 cut(s)	142, 255
Hin1II	CATG	3 cut(s)	43, 277, 294
HpaII	CCGG	2 cut(s)	142, 255
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	123, 165, 190
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	43, 277, 294
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Kzo9I	GATC	3 cut(s)	7, 19, 232
LpnPI	CCDG	5 cut(s)	43, 152, 155, 239, 268
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	207, 247
MalI	GATC	3 cut(s)	9, 21, 234
MboI	GATC	3 cut(s)	7, 19, 232
MboII	GAAGA	2 cut(s)	14, 172
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	213, 268
MmeI	TCCRAC	2 cut(s)	130, 208
MnlI	CCTC	5 cut(s)	76, 118, 166, 174, 272
MroNI	GCCGGC	1 cut(s)	141
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	2 cut(s)	142, 255
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	10
NaeI	GCCGGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	3 cut(s)	7, 19, 232
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	3 cut(s)	43, 277, 294
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PctI	GAATGC	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	7, 19, 232
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	5 cut(s)	15, 77, 154, 166, 209
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	213, 268
StyD4I	CCNGG	1 cut(s)	254
TaiI	ACGT	1 cut(s)	209
TasI	AATT	2 cut(s)	213, 268
TatI	WGTACW	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	69
XceI	RCATGY	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.