Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016608

Physical Location & Seq

Genomic Coordinates Forward (+)

8624014 .. 8626405

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTTCGGCACTCCGTCTTCATCGCCGTCATTCGGCACTCCGTCATCCACACCCGCCTTTGGCACATCTTCTCCGGCGTTCGGTACACCGTCAGCTACGCCTGCGTTCGGTACGCCATCGAATCCTTCCTTCTCCTCCGGCGGATTTGGCTCTTCACTCTTCTCGTCTCCCTTCTCATCTCAACAGCCACAGCAACAACAACAACAACAACAGCAGCAGCAGCCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAATTTTGGTTTTCAGTCACCATTCAACAACACCGCTCAGCAGCAGCAGCAAACGCCTTTCCCAAATGCTCAATTGACTACTCAGATGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGATGTCCAGGCTATCATTGAAGCTTATAAGGAAGATCCAACGAATCCCAAGTATGCTTTTCAGCATCTTTTATTCAGTGTGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGGCCATGAGCAAACTTGAAGGTATGGATTCAACAGAAAGAGAGCGCCTTTGGCCTCAGCTTGTGCAAGGTTTCAAAGATCTCTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGTCTCAGATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTTCAGAGACATTTGCAAGCATCAACCTTCCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCATGTTGAGGGTGATGAGGATTATAGAAGGCTTAGAAGGGAAGGGTTTCCGGTTACCCTTGACGAAAGGAGAGGCCGAACTGTCTGAGAAGTTAACTGCAATAACAAGACAGGTGAAAGGTCCTGGAGCAGAGCTTTCTAGGAGGGTGCAAAGTCTGCAGACGATATCTCGTGCTCAAGCAAATTCAATTGCTGCTGGTAGTTCCCTTTATCTCCCTGGGTCAACTAAAATAGACGAGCAGAGCTTGATAGATATGCAGGAGGTATTGCAACAAGAGACAGAAGCCATAGGAAGACTTGGGAACGTATTGAAGCGAGACATGAGGGATATGGAAATCATGGTGGCTGAAGATACAGAAATGGCACTAGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0017056 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup54

Protein Analysis

377

Amino Acids

41.82

Weight (kDa)

6.25

Isoelectric Point (pI)

70.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup54	PF13874	162 - 305	7.2e-31	Nucleoporin complex subunit 54

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24310
fragaria_vesca	FvH4_4g23970
malus_domestica	MD13G1116800.v1.1 MD16G1117500.v1.1
prunus_persica	Prupe.1G228700_v2.0.a1
pyrus_communis	pycom13g10140 pycom16g10070
rosa_chinensis	RchiOBHm_Chr4g0430621
rosa_laevigata	RLG00000006962
rosa_multiflora	Rmu_sc0000131.1_g000016
rosa_roxburghii	Rroxscaffold_5G00372370
rosa_rugosa	Rorug04G0244800
rosa_samantha	Rh4DG305500
rosa_wichuraiana	Rw4G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	290
AciI	CCGC	3 cut(s)	54, 141, 288
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	940
AcuI	CTGAAG	2 cut(s)	668, 1125
AfaI	GTAC	3 cut(s)	85, 112, 476
AfiI	CCNNNNNNNGG	4 cut(s)	32, 59, 80, 107
AflII	CTTAAG	1 cut(s)	611
AjnI	CCWGG	3 cut(s)	387, 880, 973
AluBI	AGCT	7 cut(s)	95, 404, 494, 577, 616, 892, 1002
AluI	AGCT	7 cut(s)	95, 404, 494, 577, 616, 892, 1002
Alw21I	GWGCWC	1 cut(s)	934
Alw26I	GTCTC	6 cut(s)	171, 640, 682, 724, 1028, 1068
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	3 cut(s)	519, 569, 831
ApeKI	GCWGC	8 cut(s)	214, 217, 220, 295, 298, 301, 491, 950
ApoI	RAATTY	1 cut(s)	940
Asp700I	GAANNNNTTC	1 cut(s)	803
AspLEI	GCGC	2 cut(s)	564, 609
AspS9I	GGNCC	1 cut(s)	878
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	4 cut(s)	264, 493, 781, 883
AvaII	GGWCC	1 cut(s)	878
BaeI	ACNNNNGTAYC	2 cut(s)	458, 491
BauI	CACGAG	1 cut(s)	927
BbsI	GAAGAC	3 cut(s)	9, 740, 1057
Bbv12I	GWGCWC	1 cut(s)	934
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	8 cut(s)	226, 229, 232, 307, 310, 313, 503, 937
BccI	CCATC	4 cut(s)	124, 256, 334, 721
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	3 cut(s)	389, 882, 975
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	6 cut(s)	171, 640, 682, 724, 1028, 1068
BfaI	CTAG	2 cut(s)	897, 1124
BfmI	CTRYAG	2 cut(s)	489, 914
BfoI	RGCGCY	2 cut(s)	565, 610
BfrI	CTTAAG	1 cut(s)	611
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	8 cut(s)	215, 218, 221, 296, 299, 302, 492, 951
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	8 cut(s)	216, 219, 222, 297, 300, 303, 493, 952
Bme1390I	CCNGG	4 cut(s)	389, 479, 882, 975
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	4 cut(s)	389, 479, 882, 975
BmsI	GCATC	2 cut(s)	454, 710
BpiI	GAAGAC	3 cut(s)	9, 740, 1057
BpmI	CTGGAG	1 cut(s)	903
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	918
BpuMI	CCSGG	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	973, 974
BsaWI	WCCGGW	1 cut(s)	807
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 59, 80, 107
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	3 cut(s)	389, 882, 975
BseDI	CCNNGG	2 cut(s)	973, 974
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	4 cut(s)	32, 59, 80, 107
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	7 cut(s)	305, 350, 587, 617, 651, 677, 834
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	8 cut(s)	226, 229, 232, 307, 310, 313, 503, 937
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	521, 571, 833
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	934
BsiSI	CCGG	4 cut(s)	74, 138, 478, 808
BslI	CCNNNNNNNGG	4 cut(s)	32, 59, 80, 107
BsmAI	GTCTC	6 cut(s)	171, 640, 682, 724, 1028, 1068
BsmBI	CGTCTC	2 cut(s)	171, 640
BsnI	GGCC	3 cut(s)	521, 571, 833
Bsp1286I	GDGCHC	1 cut(s)	934
Bsp143I	GATC	3 cut(s)	376, 415, 595
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	3 cut(s)	54, 141, 288
BspANI	GGCC	3 cut(s)	521, 571, 833
BspCNI	CTCAG	7 cut(s)	304, 349, 586, 616, 650, 676, 835
BspLI	GGNNCC	1 cut(s)	345
BspMAI	CTGCAG	2 cut(s)	493, 918
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	611
BsrBI	CCGCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	676
BssECI	CCNNGG	2 cut(s)	973, 974
BssMI	GATC	3 cut(s)	376, 415, 595
BssSI	CACGAG	1 cut(s)	927
Bst2BI	CACGAG	1 cut(s)	927
Bst2UI	CCWGG	3 cut(s)	389, 882, 975
Bst4CI	ACNGT	4 cut(s)	90, 234, 474, 840
Bst6I	CTCTTC	2 cut(s)	157, 164
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	913
BstC8I	GCNNGC	3 cut(s)	102, 489, 699
BstDEI	CTNAG	8 cut(s)	291, 336, 573, 603, 637, 663, 790, 843
BstEII	GGTNACC	1 cut(s)	810
BstF5I	GGATG	1 cut(s)	44
BstH2I	RGCGCY	2 cut(s)	565, 610
BstHHI	GCGC	2 cut(s)	564, 609
BstKTI	GATC	3 cut(s)	379, 418, 598
BstMAI	GTCTC	6 cut(s)	171, 640, 682, 724, 1028, 1068
BstMBI	GATC	3 cut(s)	376, 415, 595
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	9 cut(s)	101, 147, 220, 301, 307, 350, 568, 613, 913
BstNI	CCWGG	3 cut(s)	389, 882, 975
BstNSI	RCATGY	1 cut(s)	763
BstPI	GGTNACC	1 cut(s)	810
BstSCI	CCNGG	4 cut(s)	387, 477, 880, 973
BstSFI	CTRYAG	2 cut(s)	489, 914
BstV1I	GCAGC	8 cut(s)	226, 229, 232, 307, 310, 313, 503, 937
BstV2I	GAAGAC	3 cut(s)	9, 740, 1057
BstX2I	RGATCY	2 cut(s)	415, 595
BstYI	RGATCY	2 cut(s)	415, 595
BsuRI	GGCC	3 cut(s)	521, 571, 833
BtgZI	GCGATG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	230, 463
Cac8I	GCNNGC	3 cut(s)	102, 489, 699
CfoI	GCGC	2 cut(s)	564, 609
Cfr13I	GGNCC	1 cut(s)	878
CseI	GACGC	1 cut(s)	765
Csp6I	GTAC	3 cut(s)	84, 111, 475
CviAII	CATG	4 cut(s)	523, 760, 1078, 1096
CviQI	GTAC	3 cut(s)	84, 111, 475
DdeI	CTNAG	8 cut(s)	291, 336, 573, 603, 637, 663, 790, 843
DpnI	GATC	3 cut(s)	378, 417, 597
DpnII	GATC	3 cut(s)	376, 415, 595
Eam1104I	CTCTTC	2 cut(s)	157, 164
EarI	CTCTTC	2 cut(s)	157, 164
EciI	GGCGGA	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	924
Eco47I	GGWCC	1 cut(s)	878
Eco57I	CTGAAG	2 cut(s)	668, 1125
Eco91I	GGTNACC	1 cut(s)	810
EcoO109I	RGGNCCY	1 cut(s)	878
EcoO65I	GGTNACC	1 cut(s)	810
EcoRII	CCWGG	3 cut(s)	387, 880, 973
EcoRV	GATATC	1 cut(s)	924
Esp3I	CGTCTC	2 cut(s)	171, 640
FaeI	CATG	4 cut(s)	526, 763, 1081, 1099
FatI	CATG	4 cut(s)	522, 759, 1077, 1095
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	8 cut(s)	215, 218, 221, 296, 299, 302, 492, 951
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	8 cut(s)	215, 218, 221, 296, 299, 302, 492, 951
FspBI	CTAG	2 cut(s)	897, 1124
GlaI	GCGC	2 cut(s)	563, 608
GluI	GCNGC	8 cut(s)	215, 218, 221, 296, 299, 302, 492, 951
GsuI	CTGGAG	1 cut(s)	903
HaeII	RGCGCY	2 cut(s)	565, 610
HaeIII	GGCC	3 cut(s)	521, 571, 833
HapII	CCGG	4 cut(s)	74, 138, 478, 808
HgaI	GACGC	1 cut(s)	765
HhaI	GCGC	2 cut(s)	564, 609
Hin1II	CATG	4 cut(s)	526, 763, 1081, 1099
Hin6I	GCGC	2 cut(s)	562, 607
HinP1I	GCGC	2 cut(s)	562, 607
HincII	GTYRAC	2 cut(s)	852, 981
HindII	GTYRAC	2 cut(s)	852, 981
HindIII	AAGCTT	2 cut(s)	402, 614
HinfI	GANTC	6 cut(s)	121, 424, 545, 661, 745, 1127
HpaI	GTTAAC	1 cut(s)	852
HpaII	CCGG	4 cut(s)	74, 138, 478, 808
HphI	GGTGA	4 cut(s)	264, 493, 781, 883
Hpy166II	GTNNAC	4 cut(s)	86, 230, 852, 981
Hpy188I	TCNGA	6 cut(s)	339, 502, 640, 666, 687, 844
Hpy188III	TCNNGA	2 cut(s)	380, 620
Hpy8I	GTNNAC	4 cut(s)	86, 230, 852, 981
HpyAV	CCTTC	9 cut(s)	135, 139, 181, 530, 718, 730, 779, 788, 793
HpyCH4III	ACNGT	4 cut(s)	90, 234, 474, 840
HpyCH4IV	ACGT	1 cut(s)	1062
HpyCH4V	TGCA	8 cut(s)	491, 583, 697, 857, 907, 916, 1015, 1027
HpyF10VI	GCNNNNNNNGC	9 cut(s)	101, 147, 220, 301, 307, 350, 568, 613, 913
HpyF3I	CTNAG	8 cut(s)	291, 336, 573, 603, 637, 663, 790, 843
HpySE526I	ACGT	1 cut(s)	1062
Hsp92II	CATG	4 cut(s)	526, 763, 1081, 1099
HspAI	GCGC	2 cut(s)	562, 607
KspAI	GTTAAC	1 cut(s)	852
Kzo9I	GATC	3 cut(s)	376, 415, 595
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	4 cut(s)	349, 358, 739, 884
Lsp1109I	GCAGC	8 cut(s)	226, 229, 232, 307, 310, 313, 503, 937
LweI	GCATC	2 cut(s)	454, 710
MaeI	CTAG	2 cut(s)	897, 1124
MaeII	ACGT	1 cut(s)	1062
MaeIII	GTNAC	3 cut(s)	270, 460, 810
MalI	GATC	3 cut(s)	378, 417, 597
MbiI	CCGCTC	1 cut(s)	290
MboI	GATC	3 cut(s)	376, 415, 595
MboII	GAAGA	9 cut(s)	9, 60, 144, 151, 243, 425, 740, 1062, 1118
MfeI	CAATTG	2 cut(s)	326, 945
MflI	RGATCY	2 cut(s)	415, 595
MhlI	GDGCHC	1 cut(s)	934
MluCI	AATT	5 cut(s)	256, 326, 357, 940, 945
MlyI	GAGTC	3 cut(s)	655, 754, 1121
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	9 cut(s)	145, 511, 582, 759, 768, 823, 894, 1012, 1074
MroXI	GAANNNNTTC	1 cut(s)	803
MseI	TTAA	3 cut(s)	612, 675, 851
MspA1I	CMGCKG	1 cut(s)	494
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	4 cut(s)	74, 138, 478, 808
MspR9I	CCNGG	4 cut(s)	389, 479, 882, 975
MunI	CAATTG	2 cut(s)	326, 945
MvaI	CCWGG	3 cut(s)	389, 882, 975
MwoI	GCNNNNNNNGC	9 cut(s)	101, 147, 220, 301, 307, 350, 568, 613, 913
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	3 cut(s)	376, 415, 595
NlaIII	CATG	4 cut(s)	526, 763, 1081, 1099
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	270, 460
NspI	RCATGY	1 cut(s)	763
PasI	CCCWGGG	1 cut(s)	974
PciSI	GCTCTTC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	803
PfeI	GAWTC	3 cut(s)	121, 424, 545
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	8 cut(s)	216, 219, 222, 297, 300, 303, 493, 952
Ple19I	CGATCG	1 cut(s)	379
PleI	GAGTC	3 cut(s)	655, 753, 1121
PpsI	GAGTC	3 cut(s)	655, 753, 1121
PpuMI	RGGWCCY	1 cut(s)	878
PsiI	TTATAA	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	878
Psp6I	CCWGG	3 cut(s)	387, 880, 973
PspEI	GGTNACC	1 cut(s)	810
PspGI	CCWGG	3 cut(s)	387, 880, 973
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	878
PspPPI	RGGWCCY	1 cut(s)	878
PstI	CTGCAG	2 cut(s)	493, 918
PsuI	RGATCY	2 cut(s)	415, 595
PvuI	CGATCG	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	85, 112, 476
RsaNI	GTAC	3 cut(s)	84, 111, 475
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	612, 675, 851
SatI	GCNGC	8 cut(s)	215, 218, 221, 296, 299, 302, 492, 951
Sau3AI	GATC	3 cut(s)	376, 415, 595
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	3 cut(s)	655, 754, 1121
ScrFI	CCNGG	4 cut(s)	389, 479, 882, 975
SduI	GDGCHC	1 cut(s)	934
SfaNI	GCATC	2 cut(s)	454, 710
SfcI	CTRYAG	2 cut(s)	489, 914
SinI	GGWCC	1 cut(s)	878
SmlI	CTYRAG	2 cut(s)	611, 933
SmoI	CTYRAG	2 cut(s)	611, 933
Sse9I	AATT	5 cut(s)	256, 326, 357, 940, 945
SsiI	CCGC	3 cut(s)	54, 141, 288
SspMI	CTAG	2 cut(s)	897, 1124
StyD4I	CCNGG	4 cut(s)	387, 477, 880, 973
TaaI	ACNGT	4 cut(s)	90, 234, 474, 840
TaiI	ACGT	1 cut(s)	1065
TaqI	TCGA	1 cut(s)	119
TasI	AATT	5 cut(s)	256, 326, 357, 940, 945
TfiI	GAWTC	3 cut(s)	121, 424, 545
Tru1I	TTAA	3 cut(s)	612, 675, 851
Tru9I	TTAA	3 cut(s)	612, 675, 851
TscAI	CASTG	2 cut(s)	237, 463
TseFI	GTSAC	2 cut(s)	270, 460
TseI	GCWGC	8 cut(s)	214, 217, 220, 295, 298, 301, 491, 950
Tsp45I	GTSAC	2 cut(s)	270, 460
TspDTI	ATGAA	2 cut(s)	9, 639
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	237, 463
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	1 cut(s)	940
XceI	RCATGY	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	803
XspI	CTAG	2 cut(s)	897, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.