Rmu_sc0000131.1_g000016

Nuclear pore complex protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000131.1
Physical Location & Seq
Reverse (-)
67452 .. 70683
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000131.1_g000016.1.cds

Sequence Viewer

Length: 1221 bp
atgttcggagctcaatcgtcgtcttctcccttcggagctcagacgtcctcttctcccttcggagccttcggcactccgtcttcaaccttcggcactccggcttcgacctccgccttcgggactccatcctcgaatccagccttcggcactccctcgacgaccccgtccttcttcactcctagttccacccccgccttcggaactcccaccacgtcgtcgttttccaccggcggcttcggggcctccttgttctccagcgccttctctactcagactcagcagcaacagcaaacgccgtcgtttcagcaacaagctccctccaccggtggatttgggactcagaacccgttcggtacgccgccgccgcagcagccgcagacgccgtcgtttcagagtccctttcctactcaattgaccactcagatggctcccgtggctcctctcccttactctctcgccgatcgtgacattcaggcaattgttgacgcttataaggatgagcctggtaaccctaaatatgcttttaagcatctgttgtttagtgtaactgatccgcagtttagggtgaagcctgctggtgtatcggatataatgtgggcagaggctatggggaagcttgaaggtctatcaagtactgacagagaacggctgtggcctgagcttgttcagggttttaaggatctttcacaacgcctgaagctccaagatgaagtcatactttcagatgctgagagactgcaaatgacccaaagcaacgtgaagatgcttcaaagacattttcaagctgacactattcctcggattgaaagaatgagacagaaagagcaaggtcttgaaaggcgcctgttgagggtaatgagaatactggaggcactagagggcaaaggtttccgattgcctttaatgaaaggggaagctgagttggctgagaagttagcttcaataactagacagttgaaaggacctggagctgagctttctagcagggtacaaaacctgcgaactatatcccgagtccaggcaaattctattggtgctggtggttttgtttctcttccaggatcaaccaaaatacatgaacagagtcttgctgatatgcaagaggtcttacaacaacagactgaggctattgcaagacttggcaatgttttgaagcgtgatattagggatatggagattataatggctgaggatccagacactacagataatatgtgttag

Protein Analysis

406

Amino Acids

44.14

Weight (kDa)

6.37

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016608)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24310
fragaria_vesca FvH4_4g23970
malus_domestica MD13G1116800.v1.1 MD16G1117500.v1.1
prunus_persica Prupe.1G228700_v2.0.a1
pyrus_communis pycom13g10140 pycom16g10070
rosa_chinensis RchiOBHm_Chr4g0430621
rosa_laevigata RLG00000006962
rosa_multiflora Rmu_sc0000131.1_g000016
rosa_roxburghii Rroxscaffold_5G00372370
rosa_rugosa Rorug04G0244800
rosa_samantha Rh4DG305500
rosa_wichuraiana Rw4G026100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 492, 1181
AasI GACNNNNNNGTC 1 cut(s) 163
AatII GACGTC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 1005
AccB1I GGYRCC 1 cut(s) 840
AciI CCGC 8 cut(s) 111, 192, 231, 359, 362, 365, 374, 554
AclWI GGATC 5 cut(s) 545, 687, 1069, 1187, 1200
AcsI RAATTY 1 cut(s) 1024
AcuI CTGAAG 1 cut(s) 716
AcyI GRCGYC 3 cut(s) 44, 380, 841
AfaI GTAC 3 cut(s) 355, 634, 990
AfiI CCNNNNNNNGG 6 cut(s) 117, 143, 197, 323, 850, 1018
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 9 cut(s) 84, 620, 770, 782, 806, 836, 942, 958, 1153
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 4 cut(s) 502, 964, 1017, 1057
Alw21I GWGCWC 2 cut(s) 13, 40
Alw26I GTCTC 2 cut(s) 727, 808
AlwI GGATC 5 cut(s) 545, 687, 1069, 1187, 1200
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 1011
AoxI GGCC 2 cut(s) 240, 653
ApeKI GCWGC 3 cut(s) 280, 367, 370
ApoI RAATTY 1 cut(s) 1024
AsiGI ACCGGT 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 347
AspLEI GCGC 2 cut(s) 260, 843
AspS9I GGNCC 2 cut(s) 240, 962
AsuHPI GGTGA 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 1011
AvaII GGWCC 1 cut(s) 962
BamHI GGATCC 1 cut(s) 1192
BanI GGYRCC 1 cut(s) 840
BanII GRGCYC 2 cut(s) 13, 40
BbsI GAAGAC 2 cut(s) 15, 72
Bbv12I GWGCWC 2 cut(s) 13, 40
BbvCI CCTCAGC 1 cut(s) 1188
BbvI GCAGC 3 cut(s) 292, 379, 382
BccI CCATC 2 cut(s) 133, 418
BceAI ACGGC 3 cut(s) 280, 367, 662
BciT130I CCWGG 4 cut(s) 504, 966, 1019, 1059
BcoDI GTCTC 2 cut(s) 727, 808
BfaI CTAG 4 cut(s) 180, 875, 948, 981
BfmI CTRYAG 1 cut(s) 1203
BfoI RGCGCY 2 cut(s) 261, 844
BfuAI ACCTGC 1 cut(s) 1005
BisI GCNGC 8 cut(s) 232, 281, 359, 362, 365, 368, 371, 374
BlpI GCTNAGC 1 cut(s) 972
BlsI GCNGC 8 cut(s) 233, 282, 360, 363, 366, 369, 372, 375
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 4 cut(s) 504, 966, 1019, 1059
Bme18I GGWCC 1 cut(s) 962
BmeT110I CYCGRG 1 cut(s) 1011
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 240, 962
BmiI GGNNCC 6 cut(s) 64, 241, 429, 438, 842, 1194
BmrFI CCNGG 4 cut(s) 504, 966, 1019, 1059
BmsI GCATC 3 cut(s) 538, 715, 753
BpiI GAAGAC 2 cut(s) 15, 72
BpmI CTGGAG 3 cut(s) 238, 887, 987
Bpu10I CCTNAGC 2 cut(s) 657, 1188
Bpu1102I GCTNAGC 1 cut(s) 972
BsaHI GRCGYC 3 cut(s) 44, 380, 841
BsaJI CCNNGG 2 cut(s) 432, 797
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 6 cut(s) 117, 143, 197, 323, 850, 1018
Bse118I RCCGGY 2 cut(s) 227, 323
Bse1I ACTGG 1 cut(s) 870
Bse3DI GCAATG 1 cut(s) 1150
BseBI CCWGG 4 cut(s) 504, 966, 1019, 1059
BseDI CCNNGG 2 cut(s) 432, 797
BseGI GGATG 2 cut(s) 125, 502
BseLI CCNNNNNNNGG 6 cut(s) 117, 143, 197, 323, 850, 1018
BseMI GCAATG 1 cut(s) 1150
BseNI ACTGG 1 cut(s) 870
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 3 cut(s) 292, 379, 382
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 2 cut(s) 242, 655
BshNI GGYRCC 1 cut(s) 840
BshTI ACCGGT 1 cut(s) 323
BsiEI CGRYCG 1 cut(s) 463
BsiHKAI GWGCWC 2 cut(s) 13, 40
BsiHKCI CYCGRG 1 cut(s) 1011
BsiSI CCGG 3 cut(s) 98, 228, 324
BslFI GGGAC 3 cut(s) 133, 349, 381
BslI CCNNNNNNNGG 6 cut(s) 117, 143, 197, 323, 850, 1018
BsmAI GTCTC 2 cut(s) 727, 808
BsmFI GGGAC 3 cut(s) 133, 349, 381
BsnI GGCC 2 cut(s) 242, 655
BsoBI CYCGRG 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 13, 40
Bsp143I GATC 5 cut(s) 460, 550, 679, 1061, 1192
Bsp1720I GCTNAGC 1 cut(s) 972
BspACI CCGC 8 cut(s) 111, 192, 231, 359, 362, 365, 374, 554
BspANI GGCC 2 cut(s) 242, 655
BspLI GGNNCC 6 cut(s) 64, 241, 429, 438, 842, 1194
BspMI ACCTGC 1 cut(s) 1005
BspPI GGATC 5 cut(s) 545, 687, 1069, 1187, 1200
BspT107I GGYRCC 1 cut(s) 840
BsrDI GCAATG 1 cut(s) 1150
BsrFI RCCGGY 2 cut(s) 227, 323
BsrI ACTGG 1 cut(s) 870
BssAI RCCGGY 2 cut(s) 227, 323
BssECI CCNNGG 2 cut(s) 432, 797
BssMI GATC 5 cut(s) 460, 550, 679, 1061, 1192
BssNI GRCGYC 3 cut(s) 44, 380, 841
Bst2UI CCWGG 4 cut(s) 504, 966, 1019, 1059
Bst4CI ACNGT 1 cut(s) 954
Bst6I CTCTTC 2 cut(s) 55, 1059
BstACI GRCGYC 3 cut(s) 44, 380, 841
BstC8I GCNNGC 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 432
BstEII GGTNACC 1 cut(s) 506
BstF5I GGATG 2 cut(s) 125, 502
BstH2I RGCGCY 2 cut(s) 261, 844
BstHHI GCGC 2 cut(s) 260, 843
BstKTI GATC 5 cut(s) 463, 553, 682, 1064, 1195
BstMAI GTCTC 2 cut(s) 727, 808
BstMBI GATC 5 cut(s) 460, 550, 679, 1061, 1192
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 8 cut(s) 286, 364, 367, 370, 373, 379, 434, 923
BstNI CCWGG 4 cut(s) 504, 966, 1019, 1059
BstPI GGTNACC 1 cut(s) 506
BstSCI CCNGG 4 cut(s) 502, 964, 1017, 1057
BstSFI CTRYAG 1 cut(s) 1203
BstV1I GCAGC 3 cut(s) 292, 379, 382
BstV2I GAAGAC 2 cut(s) 15, 72
BstX2I RGATCY 2 cut(s) 679, 1192
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 2 cut(s) 679, 1192
BsuRI GGCC 2 cut(s) 242, 655
BtgI CCRYGG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 2 cut(s) 125, 502
BveI ACCTGC 1 cut(s) 1005
Cac8I GCNNGC 1 cut(s) 573
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 2 cut(s) 260, 843
Cfr10I RCCGGY 2 cut(s) 227, 323
Cfr13I GGNCC 2 cut(s) 240, 962
CseI GACGC 2 cut(s) 388, 494
Csp6I GTAC 3 cut(s) 354, 633, 989
CspAI ACCGGT 1 cut(s) 323
CviAII CATG 1 cut(s) 1076
CviQI GTAC 3 cut(s) 354, 633, 989
DinI GGCGCC 1 cut(s) 842
DpnI GATC 5 cut(s) 462, 552, 681, 1063, 1194
DpnII GATC 5 cut(s) 460, 550, 679, 1061, 1192
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 55, 1059
EarI CTCTTC 2 cut(s) 55, 1059
EciI GGCGGA 1 cut(s) 100
Ecl136II GAGCTC 2 cut(s) 11, 38
Eco24I GRGCYC 2 cut(s) 13, 40
Eco47I GGWCC 1 cut(s) 962
Eco53kI GAGCTC 2 cut(s) 11, 38
Eco57I CTGAAG 1 cut(s) 716
Eco88I CYCGRG 1 cut(s) 1011
Eco91I GGTNACC 1 cut(s) 506
EcoICRI GAGCTC 2 cut(s) 11, 38
EcoO109I RGGNCCY 2 cut(s) 240, 962
EcoO65I GGTNACC 1 cut(s) 506
EcoRII CCWGG 4 cut(s) 502, 964, 1017, 1057
EcoT38I GRGCYC 2 cut(s) 13, 40
EgeI GGCGCC 1 cut(s) 842
EheI GGCGCC 1 cut(s) 842
FaeI CATG 1 cut(s) 1079
FalI AAGNNNNNCTT 2 cut(s) 702, 734
FaqI GGGAC 3 cut(s) 133, 349, 381
FatI CATG 1 cut(s) 1075
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 8 cut(s) 232, 281, 359, 362, 365, 368, 371, 374
FokI GGATG 2 cut(s) 112, 509
FriOI GRGCYC 2 cut(s) 13, 40
Fsp4HI GCNGC 8 cut(s) 232, 281, 359, 362, 365, 368, 371, 374
FspBI CTAG 4 cut(s) 180, 875, 948, 981
GlaI GCGC 2 cut(s) 259, 842
GluI GCNGC 8 cut(s) 232, 281, 359, 362, 365, 368, 371, 374
GsuI CTGGAG 3 cut(s) 238, 887, 987
HaeII RGCGCY 2 cut(s) 261, 844
HaeIII GGCC 2 cut(s) 242, 655
HapII CCGG 3 cut(s) 98, 228, 324
HgaI GACGC 2 cut(s) 388, 494
HhaI GCGC 2 cut(s) 260, 843
Hin1I GRCGYC 3 cut(s) 44, 380, 841
Hin1II CATG 1 cut(s) 1079
Hin6I GCGC 2 cut(s) 258, 841
HinP1I GCGC 2 cut(s) 258, 841
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 7 cut(s) 121, 133, 274, 337, 394, 1014, 1084
HpaII CCGG 3 cut(s) 98, 228, 324
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 1 cut(s) 484
Hpy188III TCNNGA 5 cut(s) 118, 464, 833, 1011, 1196
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 6 cut(s) 22, 160, 217, 220, 301, 388
HpyCH4III ACNGT 1 cut(s) 954
HpyCH4IV ACGT 3 cut(s) 44, 212, 756
HpyCH4V TGCA 3 cut(s) 739, 1099, 1133
HpyF10VI GCNNNNNNNGC 8 cut(s) 286, 364, 367, 370, 373, 379, 434, 923
HpySE526I ACGT 3 cut(s) 44, 212, 756
Hsp92I GRCGYC 3 cut(s) 44, 380, 841
Hsp92II CATG 1 cut(s) 1079
HspAI GCGC 2 cut(s) 258, 841
KasI GGCGCC 1 cut(s) 840
Kzo9I GATC 5 cut(s) 460, 550, 679, 1061, 1192
LmnI GCTCC 8 cut(s) 8, 35, 62, 319, 433, 442, 705, 968
Lsp1109I GCAGC 3 cut(s) 292, 379, 382
LweI GCATC 3 cut(s) 538, 715, 753
MaeI CTAG 4 cut(s) 180, 875, 948, 981
MaeII ACGT 3 cut(s) 44, 212, 756
MaeIII GTNAC 3 cut(s) 464, 506, 544
MalI GATC 5 cut(s) 462, 552, 681, 1063, 1194
MboI GATC 5 cut(s) 460, 550, 679, 1061, 1192
MboII GAAGA 6 cut(s) 15, 42, 72, 163, 772, 1046
MfeI CAATTG 2 cut(s) 410, 477
MflI RGATCY 2 cut(s) 679, 1192
MhlI GDGCHC 2 cut(s) 13, 40
MluCI AATT 3 cut(s) 410, 477, 1024
Mly113I GGCGCC 1 cut(s) 841
MlyI GAGTC 6 cut(s) 115, 268, 331, 403, 1023, 1093
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 3 cut(s) 525, 675, 902
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 3 cut(s) 98, 228, 324
MspR9I CCNGG 4 cut(s) 504, 966, 1019, 1059
MunI CAATTG 2 cut(s) 410, 477
MvaI CCWGG 4 cut(s) 504, 966, 1019, 1059
MwoI GCNNNNNNNGC 8 cut(s) 286, 364, 367, 370, 373, 379, 434, 923
NarI GGCGCC 1 cut(s) 841
NdeII GATC 5 cut(s) 460, 550, 679, 1061, 1192
NlaIII CATG 1 cut(s) 1079
NlaIV GGNNCC 6 cut(s) 64, 241, 429, 438, 842, 1194
NmuCI GTSAC 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 133
PflFI GACNNNGTC 2 cut(s) 163, 382
PfoI TCCNGGA 1 cut(s) 1057
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 8 cut(s) 233, 282, 360, 363, 366, 369, 372, 375
Ple19I CGATCG 1 cut(s) 463
PleI GAGTC 6 cut(s) 115, 268, 331, 402, 1022, 1092
PluTI GGCGCC 1 cut(s) 844
PpsI GAGTC 6 cut(s) 115, 268, 331, 402, 1022, 1092
PpuMI RGGWCCY 1 cut(s) 962
PsiI TTATAA 2 cut(s) 492, 1181
Psp124BI GAGCTC 2 cut(s) 13, 40
Psp5II RGGWCCY 1 cut(s) 962
Psp6I CCWGG 4 cut(s) 502, 964, 1017, 1057
PspEI GGTNACC 1 cut(s) 506
PspGI CCWGG 4 cut(s) 502, 964, 1017, 1057
PspN4I GGNNCC 6 cut(s) 64, 241, 429, 438, 842, 1194
PspPI GGNCC 2 cut(s) 240, 962
PspPPI RGGWCCY 1 cut(s) 962
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 2 cut(s) 679, 1192
PsyI GACNNNGTC 2 cut(s) 163, 382
PvuI CGATCG 1 cut(s) 463
RsaI GTAC 3 cut(s) 355, 634, 990
RsaNI GTAC 3 cut(s) 354, 633, 989
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 2 cut(s) 13, 40
SaqAI TTAA 3 cut(s) 525, 675, 902
SatI GCNGC 8 cut(s) 232, 281, 359, 362, 365, 368, 371, 374
Sau3AI GATC 5 cut(s) 460, 550, 679, 1061, 1192
Sau96I GGNCC 2 cut(s) 240, 962
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 6 cut(s) 115, 268, 331, 403, 1023, 1093
ScrFI CCNGG 4 cut(s) 504, 966, 1019, 1059
SduI GDGCHC 2 cut(s) 13, 40
SfaNI GCATC 3 cut(s) 538, 715, 753
SfcI CTRYAG 1 cut(s) 1203
SfoI GGCGCC 1 cut(s) 842
SgrAI CRCCGGYG 2 cut(s) 227, 323
SinI GGWCC 1 cut(s) 962
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 3 cut(s) 410, 477, 1024
SsiI CCGC 8 cut(s) 111, 192, 231, 359, 362, 365, 374, 554
SspDI GGCGCC 1 cut(s) 840
SspMI CTAG 4 cut(s) 180, 875, 948, 981
SstI GAGCTC 2 cut(s) 13, 40
StyD4I CCNGG 4 cut(s) 502, 964, 1017, 1057
TaaI ACNGT 1 cut(s) 954
TaiI ACGT 3 cut(s) 47, 215, 759
TaqI TCGA 3 cut(s) 104, 131, 155
TasI AATT 3 cut(s) 410, 477, 1024
TatI WGTACW 1 cut(s) 632
TauI GCSGC 5 cut(s) 234, 361, 364, 367, 376
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 3 cut(s) 525, 675, 902
Tru9I TTAA 3 cut(s) 525, 675, 902
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 3 cut(s) 280, 367, 370
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 723, 920, 1092
TspGWI ACGGA 1 cut(s) 66
Tth111I GACNNNGTC 2 cut(s) 163, 382
VpaK11BI GGWCC 1 cut(s) 962
XapI RAATTY 1 cut(s) 1024
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 4 cut(s) 180, 875, 948, 981
ZraI GACGTC 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.