Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016608

Physical Location & Seq

Genomic Coordinates Forward (+)

24165014 .. 24168327

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G228700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTTCGGAGCTCAAGCTTCCTCTTCTCCTTTCGGCCTGTCATCGTCAACCTCAGTCTTCGGAACGCCATCGTCAACCCCGGCCTTCGGGACGCCGTCGTCAACCCCGGCCTTCGGCACGCCGTCTTCAACCCCAAGCTTCTTCACTCCTTCGACCCCAGCCTTTGGAACTCCGTCGTCGTCTTCATTTTCCACTGGTGGCTTCGGCGGCTCCTTCTTCGCCACTCCATTCTCTTCTCAAACTCAACAGCAACAACAGCAGACGCCGTCGTTTCAACAACCTCAGTCTGCTGGTGGCTTTGGGTTTCAGAGTCCGTTCACTACGCCACAACAGCCGACTCCCTTCCCTAATTCTCAATTGACTACTCAGATGGCTCCTGTTGCTCCTCTCCCCTTCTCTCTTGCCGATCGCGATATTCAAGCAATTGTTGACGCTTACAAGGATGAGCCTGGAAACCCTAAATATGCTTTTAAGCATTTGCTGTTTAGCGTAACTGATCCGCAGTTCAGGGTGAAGCCTGCTGGTGTATCAGATATAATGTGGGCAGAGGCTATGGGGAAGCTTGAAGGTCTGGAAAGTACTGACAGGGAACGCCTGTGGCCTCAGCTTGTTCAGGGTTTTAAAGATCTTTCGCAACGCTTGAAGCTCCAAGATGAAGTCCTTCTTTCAGATGCTGAGAGATTGCAAATGACCCAAAGCAATGTCAAGATGCTTCAAAGGCATTTTCAAGCTGACACTCTTCCTTGGATCGAAAGAATGAGACAAAAAGAACAAGGTCTTCAAAGGCGCCTTTTGAGGGTGATGAGACTACTGGAGGCACTTGAGGGCAAGGGTTTTCGGCTGCCTTTAATGAAAGGTGAAGCAGAATTGGCTGAGAAGTTAGCTGCAATTACTAGACAGTTGAAAGGATCGGGAGCTGAGTTATCTAGGAGGGTACAAAACCTGGTAACGATATCCCGTGTCCAAGAAAATGCTATTGGTGCTGGTGGTTTAGTCTGTCTTCCTGGATCAACCAAAATACATGAACAGAGTCTTGCTGATATGCAAGAGGTCTTACAACAGCAGACAGAAGCCATTGCAAGACTTGGCAATGTTTTGAAGCGCGATATTAGGGACATGGAGATTATTATGGCTGAGGAGACAGAAACAACAGAGAATATGATTATGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0017056 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup54

Protein Analysis

391

Amino Acids

42.75

Weight (kDa)

6.05

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24310
fragaria_vesca	FvH4_4g23970
malus_domestica	MD13G1116800.v1.1 MD16G1117500.v1.1
prunus_persica	Prupe.1G228700_v2.0.a1
pyrus_communis	pycom13g10140 pycom16g10070
rosa_chinensis	RchiOBHm_Chr4g0430621
rosa_laevigata	RLG00000006962
rosa_multiflora	Rmu_sc0000131.1_g000016
rosa_roxburghii	Rroxscaffold_5G00372370
rosa_rugosa	Rorug04G0244800
rosa_samantha	Rh4DG305500
rosa_wichuraiana	Rw4G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	786
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccII	CGCG	2 cut(s)	411, 1104
AciI	CCGC	2 cut(s)	207, 500
AclWI	GGATC	4 cut(s)	491, 755, 916, 1015
AcyI	GRCGYC	3 cut(s)	92, 263, 787
AfaI	GTAC	2 cut(s)	580, 936
AfiI	CCNNNNNNNGG	4 cut(s)	86, 113, 164, 796
AjnI	CCWGG	3 cut(s)	448, 942, 1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	960, 992
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	3 cut(s)	754, 799, 1133
AlwI	GGATC	4 cut(s)	491, 755, 916, 1015
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	4 cut(s)	34, 81, 108, 599
ApeKI	GCWGC	2 cut(s)	841, 884
Asp700I	GAANNNNTTC	1 cut(s)	660
AspLEI	GCGC	2 cut(s)	789, 1104
AsuC2I	CCSGG	2 cut(s)	80, 107
AsuHPI	GGTGA	3 cut(s)	523, 811, 869
BanI	GGYRCC	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	5 cut(s)	49, 117, 174, 770, 992
Bbv12I	GWGCWC	1 cut(s)	13
BbvCI	CCTCAGC	2 cut(s)	603, 1134
BbvI	GCAGC	2 cut(s)	828, 871
BccI	CCATC	2 cut(s)	76, 364
BceAI	ACGGC	3 cut(s)	79, 106, 250
BciT130I	CCWGG	3 cut(s)	450, 944, 1005
BcnI	CCSGG	2 cut(s)	80, 107
BcoDI	GTCTC	3 cut(s)	754, 799, 1133
BfaI	CTAG	2 cut(s)	894, 927
BfoI	RGCGCY	1 cut(s)	790
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	3 cut(s)	208, 842, 885
BlsI	GCNGC	3 cut(s)	209, 843, 886
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	5 cut(s)	80, 107, 450, 944, 1005
BmiI	GGNNCC	3 cut(s)	211, 375, 788
BmrFI	CCNGG	5 cut(s)	80, 107, 450, 944, 1005
BmsI	GCATC	2 cut(s)	661, 699
BpiI	GAAGAC	5 cut(s)	49, 117, 174, 770, 992
BpmI	CTGGAG	1 cut(s)	833
Bpu10I	CCTNAGC	2 cut(s)	603, 1134
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	2 cut(s)	80, 107
BsaHI	GRCGYC	3 cut(s)	92, 263, 787
BsaJI	CCNNGG	3 cut(s)	78, 105, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 113, 164, 796
Bse1I	ACTGG	2 cut(s)	199, 816
Bse3DI	GCAATG	3 cut(s)	706, 1074, 1096
BseBI	CCWGG	3 cut(s)	450, 944, 1005
BseDI	CCNNGG	3 cut(s)	78, 105, 743
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	4 cut(s)	86, 113, 164, 796
BseMI	GCAATG	3 cut(s)	706, 1074, 1096
BseMII	CTCAG	8 cut(s)	66, 296, 380, 617, 666, 864, 909, 1125
BseNI	ACTGG	2 cut(s)	199, 816
BseRI	GAGGAG	2 cut(s)	375, 1151
BseXI	GCAGC	2 cut(s)	828, 871
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	2 cut(s)	411, 1104
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	4 cut(s)	36, 83, 110, 601
BshNI	GGYRCC	1 cut(s)	786
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	80, 107
BslFI	GGGAC	2 cut(s)	103, 1127
BslI	CCNNNNNNNGG	4 cut(s)	86, 113, 164, 796
BsmAI	GTCTC	3 cut(s)	754, 799, 1133
BsmFI	GGGAC	2 cut(s)	103, 1127
BsnI	GGCC	4 cut(s)	36, 83, 110, 601
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	6 cut(s)	406, 496, 625, 747, 908, 1007
Bsp68I	TCGCGA	1 cut(s)	411
BspACI	CCGC	2 cut(s)	207, 500
BspANI	GGCC	4 cut(s)	36, 83, 110, 601
BspCNI	CTCAG	8 cut(s)	65, 295, 379, 616, 667, 865, 910, 1126
BspFNI	CGCG	2 cut(s)	411, 1104
BspLI	GGNNCC	3 cut(s)	211, 375, 788
BspPI	GGATC	4 cut(s)	491, 755, 916, 1015
BspT107I	GGYRCC	1 cut(s)	786
BsrDI	GCAATG	3 cut(s)	706, 1074, 1096
BsrI	ACTGG	2 cut(s)	199, 816
BssECI	CCNNGG	3 cut(s)	78, 105, 743
BssMI	GATC	6 cut(s)	406, 496, 625, 747, 908, 1007
BssNI	GRCGYC	3 cut(s)	92, 263, 787
BssT1I	CCWWGG	1 cut(s)	743
Bst2UI	CCWGG	3 cut(s)	450, 944, 1005
Bst4CI	ACNGT	1 cut(s)	900
Bst6I	CTCTTC	3 cut(s)	28, 238, 744
BstACI	GRCGYC	3 cut(s)	92, 263, 787
BstC8I	GCNNGC	2 cut(s)	119, 519
BstDEI	CTNAG	8 cut(s)	52, 282, 366, 603, 675, 873, 918, 1134
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	2 cut(s)	411, 1104
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	2 cut(s)	789, 1104
BstKTI	GATC	6 cut(s)	409, 499, 628, 750, 911, 1010
BstMAI	GTCTC	3 cut(s)	754, 799, 1133
BstMBI	GATC	6 cut(s)	406, 496, 625, 747, 908, 1007
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	7 cut(s)	207, 256, 331, 380, 718, 869, 980
BstNI	CCWGG	3 cut(s)	450, 944, 1005
BstSCI	CCNGG	5 cut(s)	78, 105, 448, 942, 1003
BstUI	CGCG	2 cut(s)	411, 1104
BstV1I	GCAGC	2 cut(s)	828, 871
BstV2I	GAAGAC	5 cut(s)	49, 117, 174, 770, 992
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	36, 83, 110, 601
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	192
BtuMI	TCGCGA	1 cut(s)	411
Cac8I	GCNNGC	2 cut(s)	119, 519
CaiI	CAGNNNCTG	1 cut(s)	674
CfoI	GCGC	2 cut(s)	789, 1104
CseI	GACGC	3 cut(s)	100, 271, 440
CsiI	ACCWGGT	1 cut(s)	942
Csp6I	GTAC	2 cut(s)	579, 935
CviAII	CATG	2 cut(s)	1022, 1117
CviQI	GTAC	2 cut(s)	579, 935
DdeI	CTNAG	8 cut(s)	52, 282, 366, 603, 675, 873, 918, 1134
DinI	GGCGCC	1 cut(s)	788
DpnI	GATC	6 cut(s)	408, 498, 627, 749, 910, 1009
DpnII	GATC	6 cut(s)	406, 496, 625, 747, 908, 1007
DraI	TTTAAA	1 cut(s)	622
DrdI	GACNNNNNNGTC	1 cut(s)	97
DseDI	GACNNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	28, 238, 744
EarI	CTCTTC	3 cut(s)	28, 238, 744
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	743
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	954
Eco53kI	GAGCTC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	3 cut(s)	448, 942, 1003
EcoRV	GATATC	1 cut(s)	954
EcoT14I	CCWWGG	1 cut(s)	743
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	788
EheI	GGCGCC	1 cut(s)	788
ErhI	CCWWGG	1 cut(s)	743
FaeI	CATG	2 cut(s)	1025, 1120
FaiI	YATR	9 cut(s)	465, 536, 554, 1023, 1043, 1118, 1130, 1160, 1166
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	2 cut(s)	103, 1127
FatI	CATG	2 cut(s)	1021, 1116
Fnu4HI	GCNGC	3 cut(s)	208, 842, 885
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	208, 842, 885
FspBI	CTAG	2 cut(s)	894, 927
GlaI	GCGC	2 cut(s)	788, 1103
GluI	GCNGC	3 cut(s)	208, 842, 885
GsaI	CCCAGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	833
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	4 cut(s)	36, 83, 110, 601
HapII	CCGG	2 cut(s)	80, 107
HgaI	GACGC	3 cut(s)	100, 271, 440
HhaI	GCGC	2 cut(s)	789, 1104
Hin1I	GRCGYC	3 cut(s)	92, 263, 787
Hin1II	CATG	2 cut(s)	1025, 1120
Hin6I	GCGC	2 cut(s)	787, 1102
HinP1I	GCGC	2 cut(s)	787, 1102
HincII	GTYRAC	4 cut(s)	48, 75, 102, 430
HindII	GTYRAC	4 cut(s)	48, 75, 102, 430
HindIII	AAGCTT	3 cut(s)	15, 136, 560
HinfI	GANTC	3 cut(s)	310, 337, 1030
HpaII	CCGG	2 cut(s)	80, 107
HphI	GGTGA	3 cut(s)	523, 811, 869
Hpy166II	GTNNAC	5 cut(s)	48, 75, 102, 318, 430
Hpy188I	TCNGA	6 cut(s)	8, 62, 309, 369, 532, 670
Hpy188III	TCNNGA	5 cut(s)	88, 410, 572, 706, 912
Hpy8I	GTNNAC	5 cut(s)	48, 75, 102, 318, 430
Hpy99I	CGWCG	4 cut(s)	100, 178, 181, 271
HpyAV	CCTTC	8 cut(s)	94, 121, 159, 223, 352, 403, 560, 671
HpyCH4III	ACNGT	1 cut(s)	900
HpyCH4V	TGCA	4 cut(s)	685, 887, 1045, 1079
HpyF10VI	GCNNNNNNNGC	7 cut(s)	207, 256, 331, 380, 718, 869, 980
HpyF3I	CTNAG	8 cut(s)	52, 282, 366, 603, 675, 873, 918, 1134
Hsp92I	GRCGYC	3 cut(s)	92, 263, 787
Hsp92II	CATG	2 cut(s)	1025, 1120
HspAI	GCGC	2 cut(s)	787, 1102
KasI	GGCGCC	1 cut(s)	786
Kzo9I	GATC	6 cut(s)	406, 496, 625, 747, 908, 1007
LmnI	GCTCC	6 cut(s)	8, 215, 379, 388, 651, 914
Lsp1109I	GCAGC	2 cut(s)	828, 871
LweI	GCATC	2 cut(s)	661, 699
MabI	ACCWGGT	1 cut(s)	942
MaeI	CTAG	2 cut(s)	894, 927
MaeIII	GTNAC	2 cut(s)	490, 946
MalI	GATC	6 cut(s)	408, 498, 627, 749, 910, 1009
MboI	GATC	6 cut(s)	406, 496, 625, 747, 908, 1007
MfeI	CAATTG	2 cut(s)	356, 423
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	5 cut(s)	349, 356, 423, 866, 888
Mly113I	GGCGCC	1 cut(s)	787
MlyI	GAGTC	3 cut(s)	319, 331, 1039
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	3 cut(s)	471, 621, 848
MspI	CCGG	2 cut(s)	80, 107
MspR9I	CCNGG	5 cut(s)	80, 107, 450, 944, 1005
MunI	CAATTG	2 cut(s)	356, 423
MvaI	CCWGG	3 cut(s)	450, 944, 1005
MvnI	CGCG	2 cut(s)	411, 1104
MwoI	GCNNNNNNNGC	7 cut(s)	207, 256, 331, 380, 718, 869, 980
NarI	GGCGCC	1 cut(s)	787
NciI	CCSGG	2 cut(s)	80, 107
NdeII	GATC	6 cut(s)	406, 496, 625, 747, 908, 1007
NlaIII	CATG	2 cut(s)	1025, 1120
NlaIV	GGNNCC	3 cut(s)	211, 375, 788
NruI	TCGCGA	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	660
PflFI	GACNNNGTC	2 cut(s)	94, 265
PflMI	CCANNNNNTGG	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	1003
PkrI	GCNGC	3 cut(s)	209, 843, 886
Ple19I	CGATCG	1 cut(s)	409
PleI	GAGTC	3 cut(s)	318, 331, 1038
PluTI	GGCGCC	1 cut(s)	790
PpsI	GAGTC	3 cut(s)	318, 331, 1038
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	3 cut(s)	448, 942, 1003
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	3 cut(s)	448, 942, 1003
PspN4I	GGNNCC	3 cut(s)	211, 375, 788
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	625
PsyI	GACNNNGTC	2 cut(s)	94, 265
PvuI	CGATCG	1 cut(s)	409
RruI	TCGCGA	1 cut(s)	411
RsaI	GTAC	2 cut(s)	580, 936
RsaNI	GTAC	2 cut(s)	579, 935
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	471, 621, 848
SatI	GCNGC	3 cut(s)	208, 842, 885
Sau3AI	GATC	6 cut(s)	406, 496, 625, 747, 908, 1007
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	3 cut(s)	319, 331, 1039
ScrFI	CCNGG	5 cut(s)	80, 107, 450, 944, 1005
SduI	GDGCHC	1 cut(s)	13
SexAI	ACCWGGT	1 cut(s)	942
SfaNI	GCATC	2 cut(s)	661, 699
SfoI	GGCGCC	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	12, 821
SmoI	CTYRAG	2 cut(s)	12, 821
Sse9I	AATT	5 cut(s)	349, 356, 423, 866, 888
SsiI	CCGC	2 cut(s)	207, 500
SspDI	GGCGCC	1 cut(s)	786
SspMI	CTAG	2 cut(s)	894, 927
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	5 cut(s)	78, 105, 448, 942, 1003
StyI	CCWWGG	1 cut(s)	743
TaaI	ACNGT	1 cut(s)	900
TaqI	TCGA	2 cut(s)	152, 750
TasI	AATT	5 cut(s)	349, 356, 423, 866, 888
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	1 cut(s)	210
Tru1I	TTAA	3 cut(s)	471, 621, 848
Tru9I	TTAA	3 cut(s)	471, 621, 848
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	2 cut(s)	841, 884
TspDTI	ATGAA	4 cut(s)	174, 669, 866, 1038
TspGWI	ACGGA	2 cut(s)	162, 303
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	2 cut(s)	94, 265
Van91I	CCANNNNNTGG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	2 cut(s)	894, 927
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.