pycom13g10140

Nuclear pore complex protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
6793436 .. 6796103
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10140.6

Sequence Viewer

Length: 1179 bp
ATGTTCGGAGCTCAATCTTCGTCGTCACCTTTTGGTACGCCGTCGTCAACCCCCGCCTTCGGGACGCCGTCGTCGACCCCAGCCTTCGGCACCCCGTCGTCGACCCCGGCCTTTGGGATGCCCTCTTCGACCCCGTCGTTCTTTACTCCTTCGGCTCCGGCTCCGGCCTTTGGAACTCCGTCGACGTCTGCATTTTCCACCGGTGGCTTCGGCTCCTTATTCAACACTCCATTCTCTTCTCAAACTCAGCAGCAACAGCAGCAAACGCCGTCGTTTCAGCAGCCTCAGTCTGCTGGCGGCTTTGGGTTTCAGAGCCCGTTCACTACGCCGCAGCAGCCGCAGCAGCCGACGCCCTTCCCTAACTCTCAATTGACGACTCAGATGGCTCCCGTCTCTCCTCTCCCTTTCTCTCTCGCCGATCGCGATATTCAAGCAATTGTTGACGCTTACAAGGACGAGCCTGGAAACCCTAAATATGCTTTTAAGCATTTGCTGTTTAGCGTAACTGATCCGCAGTTCAGGGTGAAGCCTGCTGGTGTATCGGATATTATGTGGGCAGAGGCTATGGCAAAGCTCGAAGGTCTGGAAAGTACTGACAGGGAGCGCCTGTGGCCTCAGCTTGTTCAGGGATTTAAAGATCTCTCTCAACGCCTGAAGCTCCAAGATGAAGTCCTTCTTTCAGATGCTGAGAGATTGCAAATGACCCAAAGCAATGTCAAGATGCTTCAAAGGCATTTTCAAGCTGACACACTTCCTTGGATCGAAAGAATGAGACAAAAAGAACAAGGTCTTCAAAGGCGCCTTTTGAGGGTGATGAGAATAGTGGAGGCACTAGAGGGCAAGGGTTTCCGACTGCCCTTAATGAAGGGTGAAGTAGAATTGGCCGAGAAGTTAGCTGCAGTTACTAGACAGTTGAAAGGATCGAGAGCTGAGCTTACTAGGAGGGTACAAAACCTACTAACCATATCCCGTGTCCAAGAGAATTCTATTGGTGCTGGTGGTTTAGGTTATCTTCCTGGATCAGCCAAAATCCATGAACAGAGTCTCGCTGCTATGCAAGAGGTGTTGCAACAGCAGACGGAAGCTATTGCGAGACTAGGCAATGTTTTGAAGCGAGATATCCGGGATATGGAGATTATAATGGCAGAGGATACAGAAACAACAGAGAACGGAAACTAA

Protein Analysis

393

Amino Acids

43.03

Weight (kDa)

6.88

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016608)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24310
fragaria_vesca FvH4_4g23970
malus_domestica MD13G1116800.v1.1 MD16G1117500.v1.1
prunus_persica Prupe.1G228700_v2.0.a1
pyrus_communis pycom13g10140 pycom16g10070
rosa_chinensis RchiOBHm_Chr4g0430621
rosa_laevigata RLG00000006962
rosa_multiflora Rmu_sc0000131.1_g000016
rosa_roxburghii Rroxscaffold_5G00372370
rosa_rugosa Rorug04G0244800
rosa_samantha Rh4DG305500
rosa_wichuraiana Rw4G026100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1139
AasI GACNNNNNNGTC 1 cut(s) 70
AatII GACGTC 1 cut(s) 188
AccB1I GGYRCC 2 cut(s) 89, 798
AccI GTMKAC 3 cut(s) 74, 101, 182
AccII CGCG 1 cut(s) 423
AciI CCGC 5 cut(s) 54, 297, 329, 338, 512
AclWI GGATC 4 cut(s) 503, 767, 928, 1027
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 1 cut(s) 982
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 4 cut(s) 65, 185, 350, 799
AfaI GTAC 3 cut(s) 37, 592, 948
AfiI CCNNNNNNNGG 7 cut(s) 59, 60, 86, 113, 170, 808, 1129
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 7 cut(s) 223, 431, 728, 740, 794, 916, 1111
AjnI CCWGG 2 cut(s) 460, 1015
AluBI AGCT 9 cut(s) 11, 574, 619, 658, 743, 896, 929, 934, 1085
AluI AGCT 9 cut(s) 11, 574, 619, 658, 743, 896, 929, 934, 1085
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 4 cut(s) 397, 766, 1049, 1087
AlwI GGATC 4 cut(s) 503, 767, 928, 1027
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 4 cut(s) 108, 165, 611, 882
ApeKI GCWGC 9 cut(s) 250, 259, 280, 331, 334, 340, 343, 896, 1049
ApoI RAATTY 1 cut(s) 982
AsiGI ACCGGT 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 672
AspLEI GCGC 2 cut(s) 606, 801
AsuC2I CCSGG 2 cut(s) 107, 1124
AsuHPI GGTGA 4 cut(s) 18, 535, 823, 881
BanI GGYRCC 2 cut(s) 89, 798
BanII GRGCYC 2 cut(s) 13, 317
BbsI GAAGAC 1 cut(s) 782
Bbv12I GWGCWC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 9 cut(s) 262, 271, 292, 343, 346, 352, 355, 883, 1036
BccI CCATC 1 cut(s) 376
BceAI ACGGC 3 cut(s) 25, 52, 253
BciT130I CCWGG 2 cut(s) 462, 1017
BciVI GTATCC 1 cut(s) 1144
BcnI CCSGG 2 cut(s) 107, 1124
BcoDI GTCTC 4 cut(s) 397, 766, 1049, 1087
BfaI CTAG 4 cut(s) 833, 906, 939, 1097
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 2 cut(s) 607, 802
BfuI GTATCC 1 cut(s) 1144
BglII AGATCT 1 cut(s) 637
BlpI GCTNAGC 1 cut(s) 930
BmcAI AGTACT 1 cut(s) 592
Bme1390I CCNGG 4 cut(s) 107, 462, 1017, 1124
BmiI GGNNCC 6 cut(s) 91, 156, 162, 214, 387, 800
BmrFI CCNGG 4 cut(s) 107, 462, 1017, 1124
BmsI GCATC 3 cut(s) 108, 673, 711
BpiI GAAGAC 1 cut(s) 782
Bpu10I CCTNAGC 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 930
BpuMI CCSGG 2 cut(s) 107, 1124
BsaHI GRCGYC 4 cut(s) 65, 185, 350, 799
BsaJI CCNNGG 2 cut(s) 105, 755
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 593, 623
Bsc4I CCNNNNNNNGG 7 cut(s) 59, 60, 86, 113, 170, 808, 1129
Bse118I RCCGGY 1 cut(s) 200
Bse3DI GCAATG 2 cut(s) 718, 1108
BseBI CCWGG 2 cut(s) 462, 1017
BseDI CCNNGG 2 cut(s) 105, 755
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 7 cut(s) 59, 60, 86, 113, 170, 808, 1129
BseMI GCAATG 2 cut(s) 718, 1108
BseMII CTCAG 6 cut(s) 260, 299, 392, 629, 678, 921
BseRI GAGGAG 1 cut(s) 387
BseXI GCAGC 9 cut(s) 262, 271, 292, 343, 346, 352, 355, 883, 1036
BseYI CCCAGC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 423
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 4 cut(s) 110, 167, 613, 884
BshNI GGYRCC 2 cut(s) 89, 798
BshTI ACCGGT 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 5 cut(s) 107, 158, 164, 201, 1123
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 7 cut(s) 59, 60, 86, 113, 170, 808, 1129
BsmAI GTCTC 4 cut(s) 397, 766, 1049, 1087
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 4 cut(s) 110, 167, 613, 884
Bsp1286I GDGCHC 2 cut(s) 13, 317
Bsp143I GATC 6 cut(s) 418, 508, 637, 759, 920, 1019
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp68I TCGCGA 1 cut(s) 423
BspACI CCGC 5 cut(s) 54, 297, 329, 338, 512
BspANI GGCC 4 cut(s) 110, 167, 613, 884
BspCNI CTCAG 6 cut(s) 259, 298, 391, 628, 679, 922
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 6 cut(s) 91, 156, 162, 214, 387, 800
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 4 cut(s) 503, 767, 928, 1027
BspT107I GGYRCC 2 cut(s) 89, 798
BsrDI GCAATG 2 cut(s) 718, 1108
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 105, 755
BssMI GATC 6 cut(s) 418, 508, 637, 759, 920, 1019
BssNI GRCGYC 4 cut(s) 65, 185, 350, 799
BssT1I CCWWGG 1 cut(s) 755
Bst2UI CCWGG 2 cut(s) 462, 1017
Bst4CI ACNGT 1 cut(s) 912
Bst6I CTCTTC 2 cut(s) 130, 241
BstACI GRCGYC 4 cut(s) 65, 185, 350, 799
BstC8I GCNNGC 2 cut(s) 295, 531
BstDEI CTNAG 6 cut(s) 246, 285, 378, 615, 687, 930
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 423
BstH2I RGCGCY 2 cut(s) 607, 802
BstHHI GCGC 2 cut(s) 606, 801
BstKTI GATC 6 cut(s) 421, 511, 640, 762, 923, 1022
BstMAI GTCTC 4 cut(s) 397, 766, 1049, 1087
BstMBI GATC 6 cut(s) 418, 508, 637, 759, 920, 1019
BstMCI CGRYCG 1 cut(s) 421
BstNI CCWGG 2 cut(s) 462, 1017
BstSCI CCNGG 4 cut(s) 105, 460, 1015, 1122
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 9 cut(s) 262, 271, 292, 343, 346, 352, 355, 883, 1036
BstV2I GAAGAC 1 cut(s) 782
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuI GTATCC 1 cut(s) 1144
BsuRI GGCC 4 cut(s) 110, 167, 613, 884
BtsCI GGATG 1 cut(s) 123
BtuMI TCGCGA 1 cut(s) 423
Cac8I GCNNGC 2 cut(s) 295, 531
CaiI CAGNNNCTG 1 cut(s) 686
CfoI GCGC 2 cut(s) 606, 801
Cfr10I RCCGGY 1 cut(s) 200
CseI GACGC 3 cut(s) 73, 358, 452
Csp6I GTAC 3 cut(s) 36, 591, 947
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 1 cut(s) 1034
CviQI GTAC 3 cut(s) 36, 591, 947
DdeI CTNAG 6 cut(s) 246, 285, 378, 615, 687, 930
DinI GGCGCC 1 cut(s) 800
DpnI GATC 6 cut(s) 420, 510, 639, 761, 922, 1021
DpnII GATC 6 cut(s) 418, 508, 637, 759, 920, 1019
DraI TTTAAA 1 cut(s) 634
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 882
Eam1104I CTCTTC 2 cut(s) 130, 241
EarI CTCTTC 2 cut(s) 130, 241
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 755
Eco24I GRGCYC 2 cut(s) 13, 317
Eco32I GATATC 1 cut(s) 1120
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 674
EcoICRI GAGCTC 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 2 cut(s) 460, 1015
EcoRV GATATC 1 cut(s) 1120
EcoT14I CCWWGG 1 cut(s) 755
EcoT38I GRGCYC 2 cut(s) 13, 317
EgeI GGCGCC 1 cut(s) 800
EheI GGCGCC 1 cut(s) 800
ErhI CCWWGG 1 cut(s) 755
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 1 cut(s) 1037
FaiI YATR 8 cut(s) 477, 551, 566, 965, 1035, 1055, 1130, 1139
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 1 cut(s) 76
FatI CATG 1 cut(s) 1033
FauI CCCGC 1 cut(s) 61
FblI GTMKAC 3 cut(s) 74, 101, 182
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 2 cut(s) 13, 317
FspBI CTAG 4 cut(s) 833, 906, 939, 1097
GlaI GCGC 2 cut(s) 605, 800
GsaI CCCAGC 1 cut(s) 83
HaeII RGCGCY 2 cut(s) 607, 802
HaeIII GGCC 4 cut(s) 110, 167, 613, 884
HapII CCGG 5 cut(s) 107, 158, 164, 201, 1123
HgaI GACGC 3 cut(s) 73, 358, 452
HhaI GCGC 2 cut(s) 606, 801
Hin1I GRCGYC 4 cut(s) 65, 185, 350, 799
Hin1II CATG 1 cut(s) 1037
Hin6I GCGC 2 cut(s) 604, 799
HinP1I GCGC 2 cut(s) 604, 799
HincII GTYRAC 5 cut(s) 48, 75, 102, 183, 442
HindII GTYRAC 5 cut(s) 48, 75, 102, 183, 442
HinfI GANTC 2 cut(s) 376, 1042
HpaII CCGG 5 cut(s) 107, 158, 164, 201, 1123
HphI GGTGA 4 cut(s) 18, 535, 823, 881
Hpy166II GTNNAC 6 cut(s) 48, 75, 102, 183, 321, 442
Hpy188I TCNGA 6 cut(s) 8, 312, 381, 544, 682, 851
Hpy188III TCNNGA 5 cut(s) 61, 422, 584, 718, 924
Hpy8I GTNNAC 6 cut(s) 48, 75, 102, 183, 321, 442
HpyAV CCTTC 7 cut(s) 67, 94, 159, 364, 572, 683, 859
HpyCH4III ACNGT 1 cut(s) 912
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 5 cut(s) 191, 697, 899, 1057, 1069
HpyF3I CTNAG 6 cut(s) 246, 285, 378, 615, 687, 930
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 4 cut(s) 65, 185, 350, 799
Hsp92II CATG 1 cut(s) 1037
HspAI GCGC 2 cut(s) 604, 799
KasI GGCGCC 1 cut(s) 798
Kzo9I GATC 6 cut(s) 418, 508, 637, 759, 920, 1019
LmnI GCTCC 7 cut(s) 8, 160, 166, 218, 391, 601, 663
Lsp1109I GCAGC 9 cut(s) 262, 271, 292, 343, 346, 352, 355, 883, 1036
LweI GCATC 3 cut(s) 108, 673, 711
MaeI CTAG 4 cut(s) 833, 906, 939, 1097
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 3 cut(s) 24, 502, 901
MalI GATC 6 cut(s) 420, 510, 639, 761, 922, 1021
MboI GATC 6 cut(s) 418, 508, 637, 759, 920, 1019
MboII GAAGA 5 cut(s) 9, 117, 228, 782, 1004
MfeI CAATTG 2 cut(s) 368, 435
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 2 cut(s) 13, 317
MluCI AATT 4 cut(s) 368, 435, 878, 982
Mly113I GGCGCC 1 cut(s) 799
MlyI GAGTC 2 cut(s) 370, 1051
MmeI TCCRAC 1 cut(s) 874
MroXI GAANNNNTTC 1 cut(s) 672
MseI TTAA 3 cut(s) 483, 633, 860
MspI CCGG 5 cut(s) 107, 158, 164, 201, 1123
MspR9I CCNGG 4 cut(s) 107, 462, 1017, 1124
MunI CAATTG 2 cut(s) 368, 435
MvaI CCWGG 2 cut(s) 462, 1017
MvnI CGCG 1 cut(s) 423
NarI GGCGCC 1 cut(s) 799
NciI CCSGG 2 cut(s) 107, 1124
NdeII GATC 6 cut(s) 418, 508, 637, 759, 920, 1019
NlaIII CATG 1 cut(s) 1037
NlaIV GGNNCC 6 cut(s) 91, 156, 162, 214, 387, 800
NmeAIII GCCGAG 1 cut(s) 910
NmuCI GTSAC 1 cut(s) 24
NruI TCGCGA 1 cut(s) 423
PcsI WCGNNNNNNNCGW 3 cut(s) 71, 134, 420
PdmI GAANNNNTTC 1 cut(s) 672
PflFI GACNNNGTC 2 cut(s) 67, 133
PfoI TCCNGGA 2 cut(s) 1015, 1122
PinAI ACCGGT 1 cut(s) 200
Ple19I CGATCG 1 cut(s) 421
PleI GAGTC 2 cut(s) 370, 1050
PluTI GGCGCC 1 cut(s) 802
PpsI GAGTC 2 cut(s) 370, 1050
PsiI TTATAA 1 cut(s) 1139
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 460, 1015
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 2 cut(s) 460, 1015
PspN4I GGNNCC 6 cut(s) 91, 156, 162, 214, 387, 800
PstI CTGCAG 1 cut(s) 901
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 637
PsyI GACNNNGTC 2 cut(s) 67, 133
PvuI CGATCG 1 cut(s) 421
RruI TCGCGA 1 cut(s) 423
RsaI GTAC 3 cut(s) 37, 592, 948
RsaNI GTAC 3 cut(s) 36, 591, 947
SacI GAGCTC 1 cut(s) 13
SalI GTCGAC 3 cut(s) 73, 100, 181
SaqAI TTAA 3 cut(s) 483, 633, 860
Sau3AI GATC 6 cut(s) 418, 508, 637, 759, 920, 1019
ScaI AGTACT 1 cut(s) 592
SchI GAGTC 2 cut(s) 370, 1051
ScrFI CCNGG 4 cut(s) 107, 462, 1017, 1124
SduI GDGCHC 2 cut(s) 13, 317
SfaNI GCATC 3 cut(s) 108, 673, 711
SfcI CTRYAG 1 cut(s) 897
SfoI GGCGCC 1 cut(s) 800
SgrAI CRCCGGYG 1 cut(s) 200
SgrDI CGTCGACG 1 cut(s) 181
Sse9I AATT 4 cut(s) 368, 435, 878, 982
SsiI CCGC 5 cut(s) 54, 297, 329, 338, 512
SspDI GGCGCC 1 cut(s) 798
SspMI CTAG 4 cut(s) 833, 906, 939, 1097
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 4 cut(s) 105, 460, 1015, 1122
StyI CCWWGG 1 cut(s) 755
TaaI ACNGT 1 cut(s) 912
TaiI ACGT 1 cut(s) 188
TaqI TCGA 7 cut(s) 74, 101, 128, 182, 576, 762, 923
TasI AATT 4 cut(s) 368, 435, 878, 982
TatI WGTACW 1 cut(s) 590
TauI GCSGC 3 cut(s) 300, 331, 340
Tru1I TTAA 3 cut(s) 483, 633, 860
Tru9I TTAA 3 cut(s) 483, 633, 860
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 9 cut(s) 250, 259, 280, 331, 334, 340, 343, 896, 1049
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 3 cut(s) 681, 878, 1050
TspGWI ACGGA 2 cut(s) 168, 1094
Tth111I GACNNNGTC 2 cut(s) 67, 133
XapI RAATTY 1 cut(s) 982
XmiI GTMKAC 3 cut(s) 74, 101, 182
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 4 cut(s) 833, 906, 939, 1097
ZraI GACGTC 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.