AT1G24577

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
8712478 .. 8713225
748 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24577.1

Sequence Viewer

Length: 228 bp
ATGAACGACAAAGGAAACATGGAGACTGAAGCTTCCATAGCGGCGATGGGCCTTGGGGGTCTGTCCCGTCAGACCAGCATCACTAAGACCATTTGCATTTGCTCACCGACCACTCACCCGGGGTCATTCAAGTGCAAGCTTCACCGGACTCCTTCGCTGCAGCGTAACAAAAGCGTTGAGACTAACATTCTTCAAAGTCTCATGACAAAGCCAGATCATTCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.16

Weight (kDa)

9.51

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013376)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 130, 194
AluBI AGCT 2 cut(s) 32, 139
AluI AGCT 2 cut(s) 32, 139
Alw26I GTCTC 3 cut(s) 17, 173, 203
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 157, 160
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 2 cut(s) 119, 120
AsuHPI GGTGA 3 cut(s) 96, 107, 134
AvaI CYCGRG 1 cut(s) 118
BbvI GCAGC 2 cut(s) 144, 172
BccI CCATC 1 cut(s) 40
BcnI CCSGG 2 cut(s) 119, 120
BcoDI GTCTC 3 cut(s) 17, 173, 203
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 3 cut(s) 42, 158, 161
BlsI GCNGC 3 cut(s) 43, 159, 162
Bme1390I CCNGG 2 cut(s) 119, 120
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 119, 120
BmsI GCATC 1 cut(s) 87
BpuMI CCSGG 2 cut(s) 119, 120
BsaJI CCNNGG 3 cut(s) 52, 118, 119
BsaWI WCCGGW 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 52, 118, 119
BseXI GCAGC 2 cut(s) 144, 172
BshFI GGCC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 119, 145
BslFI GGGAC 1 cut(s) 49
BsmAI GTCTC 3 cut(s) 17, 173, 203
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 118
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 51
BspHI TCATGA 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 52, 118, 119
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 84, 222
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 3 cut(s) 17, 173, 203
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 117, 118
BstSFI CTRYAG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 144, 172
BsuRI GGCC 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 137
CciI TCATGA 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 49
Cfr9I CCCGGG 1 cut(s) 118
CviAII CATG 2 cut(s) 19, 202
CviJI RGCY 4 cut(s) 32, 51, 139, 211
CviKI_1 RGCY 4 cut(s) 32, 51, 139, 211
DdeI CTNAG 2 cut(s) 84, 222
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 2 cut(s) 22, 205
FaiI YATR 3 cut(s) 20, 38, 203
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 18, 201
Fnu4HI GCNGC 3 cut(s) 42, 158, 161
Fsp4HI GCNGC 3 cut(s) 42, 158, 161
GluI GCNGC 3 cut(s) 42, 158, 161
HaeIII GGCC 1 cut(s) 51
HapII CCGG 2 cut(s) 119, 145
Hin1II CATG 2 cut(s) 22, 205
HindIII AAGCTT 2 cut(s) 30, 137
HinfI GANTC 1 cut(s) 148
HpaII CCGG 2 cut(s) 119, 145
HphI GGTGA 3 cut(s) 96, 107, 134
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 96, 135, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 84, 222
Hsp92II CATG 2 cut(s) 22, 205
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 3 cut(s) 88, 132, 158
Lsp1109I GCAGC 2 cut(s) 144, 172
LweI GCATC 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 130
MspI CCGG 2 cut(s) 119, 145
MspR9I CCNGG 2 cut(s) 119, 120
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 2 cut(s) 119, 120
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 22, 205
PagI TCATGA 1 cut(s) 201
PkrI GCNGC 3 cut(s) 43, 159, 162
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 130
SatI GCNGC 3 cut(s) 42, 158, 161
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 119, 120
SetI ASST 2 cut(s) 34, 141
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 158
SmaI CCCGGG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 130
SsiI CCGC 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 117, 118
StyI CCWWGG 1 cut(s) 52
TauI GCSGC 1 cut(s) 44
TseI GCWGC 2 cut(s) 157, 160
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmaI CCCGGG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.