Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013376

Physical Location & Seq

Genomic Coordinates Reverse (-)

5706511 .. 5707352

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATTCAATGCAATTTCACAAAAAGAGTAGAAGGAGAATCAGCTAATGCTCTCTATGTTATGGATGATGATGATGACGACGATGACGGGTTTCCACAAGTGGTTGGAGCATTATCAAAAGGTGATAGAGATGTAGGTGGGACGTTAATGGACTATTATCACACCCGTGGGGAGAGAGAGAGAGAGAAAGAGATTGAGAGAGAGATCATGCATGACCTCCTCATCAACCCATCAAGGTTTTTAAATCAAGTTCTAATGGAGAGTGACGACCAAGTAAGCAAGAAGGACGTGATAAAGGTGGAGATTCCATCGGATCATCAGACTGATCAAGTCGTGTGCGCCGGGCTTATGAGACAGCAGAGCATGACCAAGAACAATTGCCTTTGCTCCCCGACTACGCATGAGGGTTCGTTCCGTTGCAGGCTTCACCGGACCCCGAGCCTCCAGCGGACGAAAAGCCTGAGCTACGCTTCCCCCCGAGCCCAAGACCCAGCGTCTAAGGCTGGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.21

Weight (kDa)

5.22

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24577 AT1G67910 AT1G67910
fragaria_vesca	FvH4_4g25640 FvH4_4g25640
malus_domestica	MD13G1100900.v1.1 MD16G1101300.v1.1
prunus_persica	Prupe.1G245600_v2.0.a1
pyrus_communis	pycom16g08580
rosa_chinensis	RchiOBHm_Chr4g0433081
rosa_laevigata	RLG00000006788
rosa_roxburghii	Rroxscaffold_5G00374560
rosa_rugosa	Rorug04G0265100 Rorug04G0265200.1
rosa_samantha	Rh4BG327300 Rh4CG342700 Rh4DG322400
rosa_wichuraiana	Rw4G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	511
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	8
AhdI	GACNNNNNGTC	1 cut(s)	493
AjiI	CACGTC	1 cut(s)	289
AleI	CACNNNNGTG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	44, 465
AluI	AGCT	2 cut(s)	44, 465
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	321
Ama87I	CYCGRG	2 cut(s)	436, 477
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	432
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	134, 419
AvaI	CYCGRG	2 cut(s)	436, 477
AvaII	GGWCC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	484
BccI	CCATC	2 cut(s)	238, 316
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	432
BmeRI	GACNNNNNGTC	1 cut(s)	493
BmeT110I	CYCGRG	2 cut(s)	436, 477
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	209
BseYI	CCCAGC	1 cut(s)	490
BsiHKCI	CYCGRG	2 cut(s)	436, 477
BsiSI	CCGG	2 cut(s)	342, 430
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	154
BsoBI	CYCGRG	2 cut(s)	436, 477
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	204, 313, 325
BspACI	CCGC	1 cut(s)	448
BspCNI	CTCAG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	434
BspPI	GGATC	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	204, 313, 325
BstC8I	GCNNGC	2 cut(s)	422, 505
BstDEI	CTNAG	2 cut(s)	461, 498
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	207, 316, 328
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	3 cut(s)	204, 313, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	422, 505
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	432
CseI	GACGC	1 cut(s)	483
CviAII	CATG	4 cut(s)	208, 212, 364, 401
CviJI	RGCY	9 cut(s)	44, 346, 424, 441, 459, 465, 482, 503, 507
CviKI_1	RGCY	9 cut(s)	44, 346, 424, 441, 459, 465, 482, 503, 507
DdeI	CTNAG	2 cut(s)	461, 498
DpnI	GATC	3 cut(s)	206, 315, 327
DpnII	GATC	3 cut(s)	204, 313, 325
DraI	TTTAAA	1 cut(s)	243
DriI	GACNNNNNGTC	1 cut(s)	493
Eam1105I	GACNNNNNGTC	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	432
Eco88I	CYCGRG	2 cut(s)	436, 477
EcoT22I	ATGCAT	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	484
FaeI	CATG	4 cut(s)	211, 215, 367, 404
FaiI	YATR	8 cut(s)	57, 62, 209, 213, 350, 365, 402, 511
FalI	AAGNNNNNCTT	1 cut(s)	491
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	4 cut(s)	207, 211, 363, 400
FbaI	TGATCA	1 cut(s)	325
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	484
GlaI	GCGC	1 cut(s)	340
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	1 cut(s)	428
HapII	CCGG	2 cut(s)	342, 430
HgaI	GACGC	1 cut(s)	483
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	211, 215, 367, 404
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	3 cut(s)	4, 38, 304
HpaII	CCGG	2 cut(s)	342, 430
HphI	GGTGA	2 cut(s)	134, 419
Hpy188I	TCNGA	2 cut(s)	313, 321
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	26, 277
HpyCH4IV	ACGT	2 cut(s)	143, 288
HpyCH4V	TGCA	3 cut(s)	12, 211, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	461, 498
HpySE526I	ACGT	2 cut(s)	143, 288
Hsp92II	CATG	4 cut(s)	211, 215, 367, 404
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	204, 313, 325
LmnI	GCTCC	2 cut(s)	107, 392
LpnPI	CCDG	7 cut(s)	355, 406, 443, 458, 473, 489, 504
MaeII	ACGT	2 cut(s)	143, 288
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	3 cut(s)	206, 315, 327
MboI	GATC	3 cut(s)	204, 313, 325
MfeI	CAATTG	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	2 cut(s)	13, 376
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	4 cut(s)	227, 230, 397, 452
Mph1103I	ATGCAT	1 cut(s)	213
MseI	TTAA	2 cut(s)	146, 242
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	2 cut(s)	342, 430
MspR9I	CCNGG	1 cut(s)	343
MunI	CAATTG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	3 cut(s)	204, 313, 325
NlaIII	CATG	4 cut(s)	211, 215, 367, 404
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	213
OliI	CACNNNNGTG	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	4, 38, 304
PsiI	TTATAA	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	432
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	146, 242
Sau3AI	GATC	3 cut(s)	204, 313, 325
Sau96I	GGNCC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	484
SetI	ASST	9 cut(s)	46, 124, 139, 146, 219, 239, 291, 300, 467
SinI	GGWCC	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	13, 376
SsiI	CCGC	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	341
TaiI	ACGT	2 cut(s)	146, 291
TasI	AATT	2 cut(s)	13, 376
TfiI	GAWTC	3 cut(s)	4, 38, 304
Tru1I	TTAA	2 cut(s)	146, 242
Tru9I	TTAA	2 cut(s)	146, 242
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.