Rroxscaffold_5G00374560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013376
Physical Location & Seq
Forward (+)
55578100 .. 55578816
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374560.1

Sequence Viewer

Length: 393 bp
ATGGAAGATCCTCAGAACGAGACCAGCAACAAGGATTTCATCATGGAGGTGGAGATTCCGGTGGATGATCCGTTGAGTACTCCACGTGAAATGGCATGTGGTCATCACCATGGGCTTACAAGGCAGCAGAGTATGTCTAGGACGCCGAGTGCTAGCTGCCTTTGCTCCCCAACCACTCACGTAGGTTCATTCCGGTGCCGGCTTCACCGTTCTCCCAGCCTCAATAAGTCTTCGAGCTTCCAGAACAGACCGAGCCTCCAGAGGACAAAGAGCAGCATGGAATATGGATCATCATCGCCGCGCCGAGGAAGAATCGAGGCCACATCCAAGCCTACACTCGAATCAAACGCAACTTTTGGCCGAAATAGTATAAATGTGCTCTTCGAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.51

Weight (kDa)

8.86

Isoelectric Point (pI)

73.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24577 AT1G67910 AT1G67910
fragaria_vesca FvH4_4g25640 FvH4_4g25640
malus_domestica MD13G1100900.v1.1 MD16G1101300.v1.1
prunus_persica Prupe.1G245600_v2.0.a1
pyrus_communis pycom16g08580
rosa_chinensis RchiOBHm_Chr4g0433081
rosa_laevigata RLG00000006788
rosa_roxburghii Rroxscaffold_5G00374560
rosa_rugosa Rorug04G0265100 Rorug04G0265200.1
rosa_samantha Rh4BG327300 Rh4CG342700 Rh4DG322400
rosa_wichuraiana Rw4G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AccII CGCG 1 cut(s) 301
AciI CCGC 1 cut(s) 299
AclWI GGATC 3 cut(s) 2, 62, 295
AcoI YGGCCR 1 cut(s) 358
AcvI CACGTG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 305
AluBI AGCT 2 cut(s) 156, 237
AluI AGCT 2 cut(s) 156, 237
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 3 cut(s) 2, 62, 295
AoxI GGCC 2 cut(s) 318, 358
ApeKI GCWGC 3 cut(s) 124, 156, 273
AspLEI GCGC 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 98, 197
AsuNHI GCTAGC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 3 cut(s) 136, 143, 285
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 2 cut(s) 138, 153
BisI GCNGC 4 cut(s) 125, 157, 274, 299
BlsI GCNGC 4 cut(s) 126, 158, 275, 300
BmcAI AGTACT 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 197
BmtI GCTAGC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 242
BsaAI YACGTR 2 cut(s) 86, 181
BsaBI GATNNNNATC 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 109, 304
BsaWI WCCGGW 2 cut(s) 58, 192
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse118I RCCGGY 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 109, 304
BseGI GGATG 2 cut(s) 70, 323
BseJI GATNNNNATC 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 136, 143, 285
BseYI CCCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 301
BshFI GGCC 2 cut(s) 320, 360
BshNI GGYRCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 3 cut(s) 59, 193, 199
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 14
BsnI GGCC 2 cut(s) 320, 360
Bso31I GGTCTC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 3 cut(s) 7, 67, 287
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 299
BspANI GGCC 2 cut(s) 320, 360
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 197
BspOI GCTAGC 1 cut(s) 156
BspPI GGATC 3 cut(s) 2, 62, 295
BspQI GCTCTTC 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 109, 304
BssMI GATC 3 cut(s) 7, 67, 287
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 386
BstACI GRCGYC 1 cut(s) 143
BstBAI YACGTR 2 cut(s) 86, 181
BstC8I GCNNGC 2 cut(s) 154, 200
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 70, 323
BstFNI CGCG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 10, 70, 290
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 7, 67, 287
BstMWI GCNNNNNNNGC 2 cut(s) 121, 162
BstNSI RCATGY 1 cut(s) 99
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 3 cut(s) 136, 143, 285
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 2 cut(s) 320, 360
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 70, 323
Cac8I GCNNGC 2 cut(s) 154, 200
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 198
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 78
CviAII CATG 4 cut(s) 43, 96, 110, 277
CviJI RGCY 9 cut(s) 115, 156, 202, 219, 237, 255, 320, 331, 360
CviKI_1 RGCY 9 cut(s) 115, 156, 202, 219, 237, 255, 320, 331, 360
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 9, 69, 289
DpnII GATC 3 cut(s) 7, 67, 287
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 14
Eco72I CACGTG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 46, 99, 113, 280
FaiI YATR 8 cut(s) 44, 97, 111, 134, 278, 285, 371, 391
FatI CATG 4 cut(s) 42, 95, 109, 276
Fnu4HI GCNGC 4 cut(s) 125, 157, 274, 299
FokI GGATG 2 cut(s) 77, 310
Fsp4HI GCNGC 4 cut(s) 125, 157, 274, 299
FspBI CTAG 2 cut(s) 138, 153
GlaI GCGC 1 cut(s) 302
GluI GCNGC 4 cut(s) 125, 157, 274, 299
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 2 cut(s) 320, 360
HapII CCGG 3 cut(s) 59, 193, 199
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 4 cut(s) 46, 99, 113, 280
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 3 cut(s) 55, 312, 341
HpaII CCGG 3 cut(s) 59, 193, 199
HphI GGTGA 2 cut(s) 98, 197
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 241, 259
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 85, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 162
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 85, 180
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 4 cut(s) 46, 99, 113, 280
HspAI GCGC 1 cut(s) 301
KroI GCCGGC 1 cut(s) 198
KroNI GCCGGC 1 cut(s) 200
Kzo9I GATC 3 cut(s) 7, 67, 287
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 7 cut(s) 37, 72, 206, 212, 229, 254, 272
Lsp1109I GCAGC 3 cut(s) 136, 143, 285
MaeI CTAG 2 cut(s) 138, 153
MaeII ACGT 2 cut(s) 85, 180
MalI GATC 3 cut(s) 9, 69, 289
MboI GATC 3 cut(s) 7, 67, 287
MboII GAAGA 4 cut(s) 17, 222, 321, 373
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 381
MnlI CCTC 7 cut(s) 21, 40, 230, 255, 266, 299, 310
MroNI GCCGGC 1 cut(s) 198
MslI CAYNNNNRTG 3 cut(s) 47, 108, 193
MspI CCGG 3 cut(s) 59, 193, 199
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 121, 162
NaeI GCCGGC 1 cut(s) 200
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 7, 67, 287
NgoMIV GCCGGC 1 cut(s) 198
NheI GCTAGC 1 cut(s) 152
NlaIII CATG 4 cut(s) 46, 99, 113, 280
NlaIV GGNNCC 1 cut(s) 197
NmeAIII GCCGAG 2 cut(s) 171, 329
NspI RCATGY 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 386
PdiI GCCGGC 1 cut(s) 200
PfeI GAWTC 3 cut(s) 55, 312, 341
PkrI GCNGC 4 cut(s) 126, 158, 275, 300
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 2 cut(s) 86, 181
PspCI CACGTG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 3 cut(s) 47, 108, 193
SapI GCTCTTC 1 cut(s) 386
SatI GCNGC 4 cut(s) 125, 157, 274, 299
Sau3AI GATC 3 cut(s) 7, 67, 287
ScaI AGTACT 1 cut(s) 79
SduI GDGCHC 1 cut(s) 381
SetI ASST 6 cut(s) 51, 88, 158, 183, 187, 239
SmiMI CAYNNNNRTG 3 cut(s) 47, 108, 193
SsiI CCGC 1 cut(s) 299
SspMI CTAG 2 cut(s) 138, 153
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 88, 183
TaqI TCGA 4 cut(s) 233, 315, 339, 384
TaqII GACCGA 1 cut(s) 265
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 55, 312, 341
TseI GCWGC 3 cut(s) 124, 156, 273
TspDTI ATGAA 2 cut(s) 28, 177
TspGWI ACGGA 1 cut(s) 60
XceI RCATGY 1 cut(s) 99
XspI CTAG 2 cut(s) 138, 153
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.