RchiOBHm_Chr4g0433081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013376
Physical Location & Seq
Forward (+)
57256961 .. 57257663
703 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40161

Sequence Viewer

Length: 345 bp
ATGGAAGATCCTCAGAACGAGACCAGCAACAAGGATTTCATCATGGAGGTGGAGATTCCGGTGGATGATCCGTCGAGTACTCCACGTGAAATGGCATGTGGTCATCACCATGGGCTTACAAGGCAGCAGAGTATGTCTAGGACGCCGAGTGCTAGCTGCCTTTGCTCCCCAACCACTCACGTAGGTTCATTCCGGTGCCGGCTCCACCGTTCTCCCAGCCTCAATAAGTCTTCGAGCTTCCAGAACAGACCGAGCCTCCAGAGAACAAAGAGCAGCATGGAATATGGATCATCATCGCCGCGCCAAGGAAGAATCGAGGCCACATCCAAGCCTGCTGCAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.55

Weight (kDa)

8.86

Isoelectric Point (pI)

80.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24577 AT1G67910 AT1G67910
fragaria_vesca FvH4_4g25640 FvH4_4g25640
malus_domestica MD13G1100900.v1.1 MD16G1101300.v1.1
prunus_persica Prupe.1G245600_v2.0.a1
pyrus_communis pycom16g08580
rosa_chinensis RchiOBHm_Chr4g0433081
rosa_laevigata RLG00000006788
rosa_roxburghii Rroxscaffold_5G00374560
rosa_rugosa Rorug04G0265100 Rorug04G0265200.1
rosa_samantha Rh4BG327300 Rh4CG342700 Rh4DG322400
rosa_wichuraiana Rw4G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AccII CGCG 1 cut(s) 301
AciI CCGC 1 cut(s) 299
AclWI GGATC 3 cut(s) 2, 62, 295
AcvI CACGTG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 305, 338
AluBI AGCT 2 cut(s) 156, 237
AluI AGCT 2 cut(s) 156, 237
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 3 cut(s) 2, 62, 295
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 4 cut(s) 124, 156, 273, 335
AspLEI GCGC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 136, 143, 285, 322
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 3 cut(s) 138, 153, 343
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 5 cut(s) 125, 157, 274, 299, 336
BlsI GCNGC 5 cut(s) 126, 158, 275, 300, 337
BmcAI AGTACT 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 197, 203
BmtI GCTAGC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 242
BsaAI YACGTR 2 cut(s) 86, 181
BsaBI GATNNNNATC 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 109, 304
BsaWI WCCGGW 2 cut(s) 58, 192
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 338
Bse118I RCCGGY 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 109, 304
BseGI GGATG 2 cut(s) 70, 323
BseJI GATNNNNATC 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 305, 338
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 4 cut(s) 136, 143, 285, 322
BseYI CCCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 195
BsiSI CCGG 3 cut(s) 59, 193, 199
BslI CCNNNNNNNGG 2 cut(s) 305, 338
BsmAI GTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 7, 67, 287
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 197, 203
BspMAI CTGCAG 1 cut(s) 340
BspOI GCTAGC 1 cut(s) 156
BspPI GGATC 3 cut(s) 2, 62, 295
BspT107I GGYRCC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 109, 304
BssMI GATC 3 cut(s) 7, 67, 287
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 2 cut(s) 109, 304
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 143
BstBAI YACGTR 2 cut(s) 86, 181
BstC8I GCNNGC 4 cut(s) 154, 200, 333, 340
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 109
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 70, 323
BstFNI CGCG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 10, 70, 290
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 7, 67, 287
BstMWI GCNNNNNNNGC 2 cut(s) 121, 162
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 4 cut(s) 136, 143, 285, 322
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 320
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 70, 323
Cac8I GCNNGC 4 cut(s) 154, 200, 333, 340
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 198
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 78
CviAII CATG 4 cut(s) 43, 96, 110, 277
CviJI RGCY 9 cut(s) 115, 156, 202, 219, 237, 255, 320, 331, 342
CviKI_1 RGCY 9 cut(s) 115, 156, 202, 219, 237, 255, 320, 331, 342
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 9, 69, 289
DpnII GATC 3 cut(s) 7, 67, 287
Eco130I CCWWGG 2 cut(s) 109, 304
Eco31I GGTCTC 1 cut(s) 14
Eco72I CACGTG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 109, 304
ErhI CCWWGG 2 cut(s) 109, 304
FaeI CATG 4 cut(s) 46, 99, 113, 280
FaiI YATR 6 cut(s) 44, 97, 111, 134, 278, 285
FatI CATG 4 cut(s) 42, 95, 109, 276
Fnu4HI GCNGC 5 cut(s) 125, 157, 274, 299, 336
FokI GGATG 2 cut(s) 77, 310
Fsp4HI GCNGC 5 cut(s) 125, 157, 274, 299, 336
FspBI CTAG 3 cut(s) 138, 153, 343
GlaI GCGC 1 cut(s) 302
GluI GCNGC 5 cut(s) 125, 157, 274, 299, 336
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 320
HapII CCGG 3 cut(s) 59, 193, 199
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 4 cut(s) 46, 99, 113, 280
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 2 cut(s) 55, 312
HpaII CCGG 3 cut(s) 59, 193, 199
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 241, 259
Hpy99I CGWCG 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 85, 180
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 162
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 85, 180
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 4 cut(s) 46, 99, 113, 280
HspAI GCGC 1 cut(s) 301
KroI GCCGGC 1 cut(s) 198
KroNI GCCGGC 1 cut(s) 200
Kzo9I GATC 3 cut(s) 7, 67, 287
LmnI GCTCC 2 cut(s) 170, 207
LpnPI CCDG 8 cut(s) 37, 72, 206, 212, 229, 254, 272, 324
Lsp1109I GCAGC 4 cut(s) 136, 143, 285, 322
MaeI CTAG 3 cut(s) 138, 153, 343
MaeII ACGT 2 cut(s) 85, 180
MalI GATC 3 cut(s) 9, 69, 289
MboI GATC 3 cut(s) 7, 67, 287
MboII GAAGA 3 cut(s) 17, 222, 321
MflI RGATCY 1 cut(s) 7
MnlI CCTC 5 cut(s) 21, 40, 230, 266, 310
MroNI GCCGGC 1 cut(s) 198
MslI CAYNNNNRTG 3 cut(s) 47, 108, 193
MspI CCGG 3 cut(s) 59, 193, 199
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 121, 162
NaeI GCCGGC 1 cut(s) 200
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 7, 67, 287
NgoMIV GCCGGC 1 cut(s) 198
NheI GCTAGC 1 cut(s) 152
NlaIII CATG 4 cut(s) 46, 99, 113, 280
NlaIV GGNNCC 2 cut(s) 197, 203
NmeAIII GCCGAG 1 cut(s) 171
NspI RCATGY 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 55, 312
PkrI GCNGC 5 cut(s) 126, 158, 275, 300, 337
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 2 cut(s) 86, 181
PspCI CACGTG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 197, 203
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 3 cut(s) 47, 108, 193
SatI GCNGC 5 cut(s) 125, 157, 274, 299, 336
Sau3AI GATC 3 cut(s) 7, 67, 287
ScaI AGTACT 1 cut(s) 79
SetI ASST 6 cut(s) 51, 88, 158, 183, 187, 239
SfcI CTRYAG 1 cut(s) 336
SmiMI CAYNNNNRTG 3 cut(s) 47, 108, 193
SsiI CCGC 1 cut(s) 299
SspMI CTAG 3 cut(s) 138, 153, 343
StyI CCWWGG 2 cut(s) 109, 304
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 88, 183
TaqI TCGA 3 cut(s) 74, 233, 315
TaqII GACCGA 1 cut(s) 265
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 2 cut(s) 55, 312
TseI GCWGC 4 cut(s) 124, 156, 273, 335
TspDTI ATGAA 2 cut(s) 28, 177
TspGWI ACGGA 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 336
XceI RCATGY 1 cut(s) 99
XspI CTAG 3 cut(s) 138, 153, 343
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.