MD16G1101300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013376
Physical Location & Seq
Reverse (-)
7026843 .. 7027100
258 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1101300.v1.1.491

Sequence Viewer

Length: 258 bp
ATGGAGAGTGACGAACAAGTAAGCAAGAAGGACGTGATAAAGGTGGGGATTCCATCGGATCATCAGACTGATCAAGTCGTGTGCGCAGGGCTTATGAGACAGCAGAGCATGACCAAGAACAATTGCCTTTGCTCCCCGACCACGCATGAGGGTTCGTTCCGTTGCAGGCTTCACCGGGCCCCGAGCCTCCAGCGGACGAAAAGCCTGAGCTATGCTTCCCCCCGAGCCCAAGACCCAGCGTCTAAGGCTGGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.38

Weight (kDa)

9.1

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24577 AT1G67910 AT1G67910
fragaria_vesca FvH4_4g25640 FvH4_4g25640
malus_domestica MD13G1100900.v1.1 MD16G1101300.v1.1
prunus_persica Prupe.1G245600_v2.0.a1
pyrus_communis pycom16g08580
rosa_chinensis RchiOBHm_Chr4g0433081
rosa_laevigata RLG00000006788
rosa_roxburghii Rroxscaffold_5G00374560
rosa_rugosa Rorug04G0265100 Rorug04G0265200.1
rosa_samantha Rh4BG327300 Rh4CG342700 Rh4DG322400
rosa_wichuraiana Rw4G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 85
AciI CCGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 66
AhdI GACNNNNNGTC 1 cut(s) 238
AjiI CACGTC 1 cut(s) 34
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 2 cut(s) 181, 222
AoxI GGCC 1 cut(s) 177
ApaI GGGCCC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 177, 178
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 164
AvaI CYCGRG 2 cut(s) 181, 222
BaeGI GKGCMC 1 cut(s) 181
BanII GRGCYC 2 cut(s) 181, 229
BccI CCATC 1 cut(s) 61
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 176
BmeRI GACNNNNNGTC 1 cut(s) 238
BmeT110I CYCGRG 2 cut(s) 181, 222
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 177, 178
BmiI GGNNCC 2 cut(s) 179, 180
BmrFI CCNGG 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 179
BsiHKCI CYCGRG 2 cut(s) 181, 222
BsiSI CCGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 2 cut(s) 181, 222
Bsp120I GGGCCC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 181, 229
Bsp143I GATC 2 cut(s) 58, 70
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 179, 180
BspPI GGATC 1 cut(s) 66
BssMI GATC 2 cut(s) 58, 70
BstC8I GCNNGC 2 cut(s) 167, 250
BstDEI CTNAG 2 cut(s) 206, 243
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 2 cut(s) 61, 73
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 2 cut(s) 58, 70
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 179
BtrI CACGTC 1 cut(s) 34
Cac8I GCNNGC 2 cut(s) 167, 250
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 177, 178
CseI GACGC 1 cut(s) 228
CviAII CATG 2 cut(s) 109, 146
CviJI RGCY 9 cut(s) 91, 169, 179, 186, 204, 210, 227, 248, 252
CviKI_1 RGCY 9 cut(s) 91, 169, 179, 186, 204, 210, 227, 248, 252
DdeI CTNAG 2 cut(s) 206, 243
DpnI GATC 2 cut(s) 60, 72
DpnII GATC 2 cut(s) 58, 70
DriI GACNNNNNGTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 181, 229
Eco88I CYCGRG 2 cut(s) 181, 222
EcoO109I RGGNCCY 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 181, 229
FaeI CATG 2 cut(s) 112, 149
FaiI YATR 4 cut(s) 95, 110, 147, 213
FalI AAGNNNNNCTT 1 cut(s) 236
FatI CATG 2 cut(s) 108, 145
FbaI TGATCA 1 cut(s) 70
FriOI GRGCYC 2 cut(s) 181, 229
FspI TGCGCA 1 cut(s) 85
GlaI GCGC 1 cut(s) 85
GsaI CCCAGC 1 cut(s) 239
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 175
HgaI GACGC 1 cut(s) 228
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 112, 149
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 175
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 58, 66
HpyAV CCTTC 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 206, 243
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 112, 149
HspAI GCGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 58, 70
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 7 cut(s) 72, 151, 188, 203, 218, 234, 249
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 60, 72
MboI GATC 2 cut(s) 58, 70
MfeI CAATTG 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 181, 229
MluCI AATT 1 cut(s) 121
MnlI CCTC 2 cut(s) 142, 197
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 176
NdeII GATC 2 cut(s) 58, 70
NlaIII CATG 2 cut(s) 112, 149
NlaIV GGNNCC 2 cut(s) 179, 180
NmuCI GTSAC 1 cut(s) 8
NsbI TGCGCA 1 cut(s) 85
PfeI GAWTC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 179, 180
PspOMI GGGCCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 177, 178
Sau3AI GATC 2 cut(s) 58, 70
Sau96I GGNCC 2 cut(s) 177, 178
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 2 cut(s) 181, 229
SetI ASST 3 cut(s) 36, 45, 212
Sse9I AATT 1 cut(s) 121
SsiI CCGC 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 174
TaiI ACGT 1 cut(s) 36
TasI AATT 1 cut(s) 121
TfiI GAWTC 1 cut(s) 49
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.