Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006539

Physical Location & Seq

Genomic Coordinates Reverse (-)

8725789 .. 8727212

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24625.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACGGAATCTGATGATGCCTCACGAGAAACACCAGCCAGCAGAGGAGGAGAAGCCTCGTCAAATCAAGATCTGTCCAAACCAGAATCAAACCATGTTTCACTCGATCTCAAGCTCAACGATACTTTCAACGATGACACAAAGAGCACAAAGTGTGAAGCAAACCCAAGAGTCTTCTCTTGCAACTACTGCAGACGCAAGTTCTATAGCTCTCAAGCTCTTGGAGGTCACCAGAACGCACACAAGCGAGAAAGAACAATGGCCAAACGAGCAATGCACATGGGAAGAATGTTTGGTCACCATCACAGGCCTTACACATACACTTCTTCTTCCCTTGGGATGCAAGCTCACTCCGGTTTACTTCATCACACCTTATCTCAGCCTCAGCCTCTTGTTTCTAGGTTTCATCATCAAGGGTATTTTGGTAACACCGTGCCGTTGTTCTTTGACTATGACGATGGTGGTAGCGACTTCTTCTGGCCCGGCAGCTTCCGTCAGGTGGTTGAGGAAGCTGAGGCTCCGGTGGTTGTGGTGGCTAGTACTGAGTCAGGCCTTGATTTGAACTCGGTTGCGGCAAATGGAGGTGTAGATAATAATAGCTCAAAGCCTGATCTTACCTTAAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.17

Weight (kDa)

6.44

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24625
fragaria_vesca	FvH4_4g33120 FvH4_4g33120 FvH4_4g33120 FvH4_4g33120
malus_domestica	MD13G1016900.v1.1 MD16G1014800.v1.1
prunus_persica	Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1
pyrus_communis	pycom13g01460 pycom16g01360
rosa_chinensis	RchiOBHm_Chr4g0442171
rosa_laevigata	RLG00000006033
rosa_multiflora	Rmu_sc0010284.1_g000008
rosa_roxburghii	Rroxscaffold_5G00383080
rosa_rugosa	Rorug04G0339300 Rorug04G0339300
rosa_samantha	Rh4AG391000 Rh4BG404600 Rh4CG419600 Rh4DG397600
rosa_wichuraiana	Rw4G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflII	CTTAAG	1 cut(s)	619
AgsI	TTSAA	2 cut(s)	130, 562
AluBI	AGCT	7 cut(s)	115, 210, 218, 347, 489, 512, 600
AluI	AGCT	7 cut(s)	115, 210, 218, 347, 489, 512, 600
Alw21I	GWGCWC	1 cut(s)	149
AoxI	GGCC	4 cut(s)	261, 308, 479, 550
ApeKI	GCWGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	480
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	2 cut(s)	221, 290
BalI	TGGCCA	1 cut(s)	263
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	149
BbvCI	CCTCAGC	2 cut(s)	384, 513
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	2 cut(s)	309, 452
BceAI	ACGGC	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	483
BfaI	CTAG	2 cut(s)	399, 537
BfmI	CTRYAG	2 cut(s)	190, 205
BfrI	CTTAAG	1 cut(s)	619
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	2 cut(s)	487, 573
BlsI	GCNGC	2 cut(s)	488, 574
BmcAI	AGTACT	1 cut(s)	541
Bme1390I	CCNGG	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	7, 330
BpiI	GAAGAC	1 cut(s)	166
Bpu10I	CCTNAGC	2 cut(s)	384, 513
BpuEI	CTTGAG	2 cut(s)	95, 198
BpuMI	CCSGG	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	2 cut(s)	353, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	4 cut(s)	392, 398, 504, 534
BseRI	GAGGAG	2 cut(s)	60, 63
BseXI	GCAGC	1 cut(s)	498
BshFI	GGCC	4 cut(s)	263, 310, 481, 552
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	354, 483, 521
BslI	CCNNNNNNNGG	1 cut(s)	499
BsnI	GGCC	4 cut(s)	263, 310, 481, 552
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	70, 106, 610
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	4 cut(s)	263, 310, 481, 552
BspCNI	CTCAG	4 cut(s)	391, 397, 505, 535
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	3 cut(s)	70, 106, 610
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	433
BstAFI	CTTAAG	1 cut(s)	619
BstAPI	GCANNNNNTGC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	40, 345
BstDEI	CTNAG	4 cut(s)	378, 384, 513, 543
BstEII	GGTNACC	2 cut(s)	227, 296
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	73, 109, 613
BstMBI	GATC	3 cut(s)	70, 106, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 269
BstPI	GGTNACC	2 cut(s)	227, 296
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	2 cut(s)	190, 205
BstV1I	GCAGC	1 cut(s)	498
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	4 cut(s)	263, 310, 481, 552
BtsCI	GGATG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	40, 345
Cfr13I	GGNCC	1 cut(s)	480
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	2 cut(s)	95, 280
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	4 cut(s)	378, 384, 513, 543
DpnI	GATC	3 cut(s)	72, 108, 612
DpnII	GATC	3 cut(s)	70, 106, 610
DraIII	CACNNNGTG	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	2 cut(s)	310, 552
Eco91I	GGTNACC	2 cut(s)	227, 296
EcoO65I	GGTNACC	2 cut(s)	227, 296
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	98, 283
FaiI	YATR	5 cut(s)	96, 207, 281, 319, 453
FatI	CATG	2 cut(s)	94, 279
Fnu4HI	GCNGC	2 cut(s)	487, 573
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	487, 573
FspBI	CTAG	2 cut(s)	399, 537
GluI	GCNGC	2 cut(s)	487, 573
HaeIII	GGCC	4 cut(s)	263, 310, 481, 552
HapII	CCGG	3 cut(s)	354, 483, 521
HgaI	GACGC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	98, 283
HinfI	GANTC	5 cut(s)	8, 86, 171, 545, 624
HpaII	CCGG	3 cut(s)	354, 483, 521
HphI	GGTGA	2 cut(s)	221, 290
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	24, 68
Hpy8I	GTNNAC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	183, 192, 277, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 269
HpyF3I	CTNAG	4 cut(s)	378, 384, 513, 543
Hsp92II	CATG	2 cut(s)	98, 283
Kzo9I	GATC	3 cut(s)	70, 106, 610
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	2 cut(s)	7, 330
MaeI	CTAG	2 cut(s)	399, 537
MaeIII	GTNAC	3 cut(s)	227, 296, 425
MalI	GATC	3 cut(s)	72, 108, 612
MboI	GATC	3 cut(s)	70, 106, 610
MboII	GAAGA	5 cut(s)	166, 297, 318, 321, 466
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	149
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	180, 554, 618
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	620
Msp20I	TGGCCA	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	619
MspI	CCGG	3 cut(s)	354, 483, 521
MspR9I	CCNGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	189, 269
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	70, 106, 610
NlaIII	CATG	2 cut(s)	98, 283
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	227, 296
PceI	AGGCCT	2 cut(s)	310, 552
PfeI	GAWTC	2 cut(s)	8, 86
PkrI	GCNGC	2 cut(s)	488, 574
PleI	GAGTC	3 cut(s)	179, 553, 618
PpsI	GAGTC	3 cut(s)	179, 553, 618
PspEI	GGTNACC	2 cut(s)	227, 296
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	620
SatI	GCNGC	2 cut(s)	487, 573
Sau3AI	GATC	3 cut(s)	70, 106, 610
Sau96I	GGNCC	1 cut(s)	480
ScaI	AGTACT	1 cut(s)	541
SchI	GAGTC	3 cut(s)	180, 554, 618
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	149
SfaNI	GCATC	2 cut(s)	7, 330
SfcI	CTRYAG	2 cut(s)	190, 205
SmlI	CTYRAG	3 cut(s)	110, 213, 619
SmoI	CTYRAG	3 cut(s)	110, 213, 619
SseBI	AGGCCT	2 cut(s)	310, 552
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	2 cut(s)	399, 537
StuI	AGGCCT	2 cut(s)	310, 552
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	105
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	8, 86
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TseFI	GTSAC	2 cut(s)	227, 296
TseI	GCWGC	1 cut(s)	486
Tsp45I	GTSAC	2 cut(s)	227, 296
TspDTI	ATGAA	2 cut(s)	353, 395
TspGWI	ACGGA	2 cut(s)	20, 482
Vha464I	CTTAAG	1 cut(s)	619
XspI	CTAG	2 cut(s)	399, 537
ZrmI	AGTACT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.