Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006539

Physical Location & Seq

Genomic Coordinates Reverse (-)

31443329 .. 31447243

Gene Structure 3915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33120.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGATAACAGTGCCAAACTTGAACTTGGAATTTGAGAATGATAATTCAGAAGTCACAAGCCAAGTAACTTCCAACAACATAGCTCAGCAAGATGAATCCCCTGATCCCTCCAAGGACAGCACCACCACTTCGTCCTGTCTCACAAATCAGACAAACCTTCAACAAAATCCTGGGGAGATGTCCCTCAACTTATCACTCCAATTTAGCTCCAATGACCTTGAATTGAAGCACATGGCAGGGGAGACTTTCAGCGAAGTTGAAGCAGCGCCTGATTCTGAAGCAGCAATTCCAAGGGTATTCTCTTGCAACTACTGTAAGCGCAAGTTCTTTAGCTCTCAAGCATTGGGGGGACATCAGAATGCTCATAAGAGGGAGAGGACAATGGCAAAGCGTGCATTGCGAATGGGAATGTTTCCTGATCATAGGTATACTAGTTTGGCATCTCTTCCCTTACACGGTTCTGCTGCTTCTGCCTTCCGGTCGCTTGGGATTGAAGCTCACTCTGCAATGCACCAAAACATGTTGATACACTCAGACCCGAGGCTACCTGTTCCTGACACAAGAGGTGTAGGAAGGTTTCAGCAGCAAGGCTATTATGGAGTGCCGATGCTGATGCCGCCAATGCCGATGTTCATGGAAGATGATGATGTGGGTATGTTTTGGCCGGGGAGCTTTCGCCAGGTGGGTGAGGGAATCCGAGGTGAGTTCAGTATGAATCAATCTGCCCAAAGTACACAAATGATGAACTCCGGAAGGACCATACCACCAAAAAGTAATACAAGTTCATCATCTTCTTCTCCTGATCTTACCCTAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

30.11

Weight (kDa)

5.74

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24625
fragaria_vesca	FvH4_4g33120 FvH4_4g33120 FvH4_4g33120 FvH4_4g33120
malus_domestica	MD13G1016900.v1.1 MD16G1014800.v1.1
prunus_persica	Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1
pyrus_communis	pycom13g01460 pycom16g01360
rosa_chinensis	RchiOBHm_Chr4g0442171
rosa_laevigata	RLG00000006033
rosa_multiflora	Rmu_sc0010284.1_g000008
rosa_roxburghii	Rroxscaffold_5G00383080
rosa_rugosa	Rorug04G0339300 Rorug04G0339300
rosa_samantha	Rh4AG391000 Rh4BG404600 Rh4CG419600 Rh4DG397600
rosa_wichuraiana	Rw4G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	428
AccIII	TCCGGA	1 cut(s)	749
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	6 cut(s)	22, 161, 221, 226, 260, 494
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	169, 678
AluBI	AGCT	6 cut(s)	83, 207, 333, 497, 672, 817
AluI	AGCT	6 cut(s)	83, 207, 333, 497, 672, 817
Alw26I	GTCTC	2 cut(s)	143, 236
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	538
Aor13HI	TCCGGA	1 cut(s)	749
AoxI	GGCC	1 cut(s)	662
ApeKI	GCWGC	4 cut(s)	263, 281, 464, 583
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	268, 321
AspS9I	GGNCC	1 cut(s)	756
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	2 cut(s)	698, 713
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	1 cut(s)	756
BbvI	GCAGC	4 cut(s)	275, 293, 451, 595
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	2 cut(s)	171, 680
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	143, 236
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	5 cut(s)	264, 282, 465, 584, 617
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	5 cut(s)	265, 283, 466, 585, 618
Bme1390I	CCNGG	3 cut(s)	171, 666, 680
Bme18I	GGWCC	1 cut(s)	756
BmeT110I	CYCGRG	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	756
BmrFI	CCNGG	3 cut(s)	171, 666, 680
BmsI	GCATC	3 cut(s)	449, 597, 603
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	666
BsaJI	CCNNGG	6 cut(s)	111, 170, 290, 539, 665, 697
BsaWI	WCCGGW	2 cut(s)	477, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	395, 513
BseAI	TCCGGA	1 cut(s)	749
BseBI	CCWGG	2 cut(s)	171, 680
BseDI	CCNNGG	6 cut(s)	111, 170, 290, 539, 665, 697
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	395, 513
BseMII	CTCAG	2 cut(s)	98, 546
BseXI	GCAGC	4 cut(s)	275, 293, 451, 595
Bsh1285I	CGRYCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	664
BsiEI	CGRYCG	1 cut(s)	482
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	478, 665, 750
BslFI	GGGAC	2 cut(s)	166, 363
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	143, 236
BsmFI	GGGAC	2 cut(s)	166, 363
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	664
BsoBI	CYCGRG	1 cut(s)	538
Bsp13I	TCCGGA	1 cut(s)	749
Bsp143I	GATC	3 cut(s)	103, 418, 802
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	1 cut(s)	664
BspCNI	CTCAG	2 cut(s)	97, 545
BspEI	TCCGGA	1 cut(s)	749
BspPI	GGATC	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	395, 513
BssECI	CCNNGG	6 cut(s)	111, 170, 290, 539, 665, 697
BssMI	GATC	3 cut(s)	103, 418, 802
BssNAI	GTATAC	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	111, 290
Bst1107I	GTATAC	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	171, 680
Bst4CI	ACNGT	3 cut(s)	10, 314, 458
Bst6I	CTCTTC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	84, 532
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 321
BstKTI	GATC	3 cut(s)	106, 421, 805
BstMAI	GTCTC	2 cut(s)	143, 236
BstMBI	GATC	3 cut(s)	103, 418, 802
BstMCI	CGRYCG	1 cut(s)	482
BstMWI	GCNNNNNNNGC	6 cut(s)	392, 397, 470, 503, 616, 622
BstNI	CCWGG	2 cut(s)	171, 680
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	169, 664, 678
BstV1I	GCAGC	4 cut(s)	275, 293, 451, 595
BstZ17I	GTATAC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	664
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	2 cut(s)	268, 321
Cfr13I	GGNCC	1 cut(s)	756
Csp6I	GTAC	1 cut(s)	732
CviAII	CATG	3 cut(s)	232, 520, 634
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	2 cut(s)	84, 532
DpnI	GATC	3 cut(s)	105, 420, 804
DpnII	GATC	3 cut(s)	103, 418, 802
EaeI	YGGCCR	1 cut(s)	662
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	2 cut(s)	111, 290
Eco47I	GGWCC	1 cut(s)	756
Eco57I	CTGAAG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	169, 678
EcoT14I	CCWWGG	2 cut(s)	111, 290
ErhI	CCWWGG	2 cut(s)	111, 290
FaeI	CATG	3 cut(s)	235, 523, 637
FaqI	GGGAC	2 cut(s)	166, 363
FatI	CATG	3 cut(s)	231, 519, 633
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	5 cut(s)	264, 282, 465, 584, 617
Fsp4HI	GCNGC	5 cut(s)	264, 282, 465, 584, 617
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	2 cut(s)	267, 320
GluI	GCNGC	5 cut(s)	264, 282, 465, 584, 617
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	664
HapII	CCGG	3 cut(s)	478, 665, 750
HhaI	GCGC	2 cut(s)	268, 321
Hin1II	CATG	3 cut(s)	235, 523, 637
Hin6I	GCGC	2 cut(s)	266, 319
HinP1I	GCGC	2 cut(s)	266, 319
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	4 cut(s)	95, 272, 693, 715
HpaII	CCGG	3 cut(s)	478, 665, 750
HphI	GGTGA	2 cut(s)	698, 713
Hpy166II	GTNNAC	2 cut(s)	429, 734
Hpy188I	TCNGA	6 cut(s)	49, 150, 277, 357, 535, 698
Hpy188III	TCNNGA	4 cut(s)	416, 554, 750, 800
Hpy8I	GTNNAC	2 cut(s)	429, 734
HpyAV	CCTTC	4 cut(s)	167, 484, 567, 747
HpyCH4III	ACNGT	3 cut(s)	10, 314, 458
HpyCH4V	TGCA	4 cut(s)	306, 395, 506, 511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	392, 397, 470, 503, 616, 622
HpyF3I	CTNAG	2 cut(s)	84, 532
Hsp92II	CATG	3 cut(s)	235, 523, 637
HspAI	GCGC	2 cut(s)	266, 319
Kpn2I	TCCGGA	1 cut(s)	749
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	103, 418, 802
LmnI	GCTCC	2 cut(s)	212, 669
Lsp1109I	GCAGC	4 cut(s)	275, 293, 451, 595
LweI	GCATC	3 cut(s)	449, 597, 603
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	52, 64
MalI	GATC	3 cut(s)	105, 420, 804
MboI	GATC	3 cut(s)	103, 418, 802
MboII	GAAGA	4 cut(s)	437, 650, 783, 786
MluCI	AATT	5 cut(s)	29, 43, 200, 221, 285
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	8 cut(s)	118, 194, 363, 369, 534, 557, 682, 692
MroI	TCCGGA	1 cut(s)	749
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	3 cut(s)	478, 665, 750
MspR9I	CCNGG	3 cut(s)	171, 666, 680
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	171, 680
MwoI	GCNNNNNNNGC	6 cut(s)	392, 397, 470, 503, 616, 622
NciI	CCSGG	1 cut(s)	666
NdeII	GATC	3 cut(s)	103, 418, 802
NlaIII	CATG	3 cut(s)	235, 523, 637
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	523
PciI	ACATGT	1 cut(s)	519
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	4 cut(s)	95, 272, 693, 715
PkrI	GCNGC	5 cut(s)	265, 283, 466, 585, 618
PscI	ACATGT	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	169, 678
PspGI	CCWGG	2 cut(s)	169, 678
PspPI	GGNCC	1 cut(s)	756
PsrI	GAACNNNNNNTAC	2 cut(s)	766, 798
PstNI	CAGNNNCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
RseI	CAYNNNNRTG	1 cut(s)	357
SatI	GCNGC	5 cut(s)	264, 282, 465, 584, 617
Sau3AI	GATC	3 cut(s)	103, 418, 802
Sau96I	GGNCC	1 cut(s)	756
ScrFI	CCNGG	3 cut(s)	171, 666, 680
SfaNI	GCATC	3 cut(s)	449, 597, 603
SinI	GGWCC	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	5 cut(s)	29, 43, 200, 221, 285
SsiI	CCGC	1 cut(s)	617
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	169, 664, 678
StyI	CCWWGG	2 cut(s)	111, 290
TaaI	ACNGT	3 cut(s)	10, 314, 458
TasI	AATT	5 cut(s)	29, 43, 200, 221, 285
TatI	WGTACW	1 cut(s)	731
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	4 cut(s)	95, 272, 693, 715
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	263, 281, 464, 583
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	5 cut(s)	108, 622, 728, 758, 774
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	756
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.