Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006539

Physical Location & Seq

Genomic Coordinates Reverse (-)

858974 .. 859750

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTAACACAAAACTTGAACTTGGAATTTGAAAATAATTCAGAAGTCACGAACCAAGTAACTTCGAACGTACCTCTGCAAGAAGAATCCCCTGACGCCTCTAAGGACAGCGCAACCACTTCTTCGTGCCTCACAAATCAGACAAACCATCAACAACAAGATCCCGGGCCTGTTTCACTTGACTTGACACTCCAGTTTTGCTCCAGCGACGTTGAATTGAAGGGCACAGGGGAGACAAGTAGTGAGGCAGCTGCACCCCCTACTTCAGAAGGAACAAACCCAAGGGTATTCTCATGCAACTACTGTAAGCGTAAGTTCTATAGCTCACAGGCACTTGGTGGCCATCAGAATGCTCACAAGAGGGAGAGGACAATGGCCAAGCGTGCTATGCGTATGGGAATGTTTACCGACAGGTATACTAGCTTGGCATCTCTCCCCCTACATGGTTCTGCCGCTTCTGCATTCCGGTCTCTTGGCATCCAAGCTCATTCTGCAGTGCACCAAAACACGATGGTATCATCAGATCATCCGAGGTTCCCTGTCCCCGACACAAGAGGCGTAGCGAGGTTTCAACACGGCTATTTTGGAGTGCCGGTGTTCATGGACGAGGATGACGAGGGCATGTTTTGGCCCGGGAGTTTCCGGCAGGTAGGCAAGGGAGTTGGAGGTCATTACAATGTGCAATCTGCACAAAATCCAAACATGAATTCAGGAACAAGCATGGCACCAAGAAATAATACAAGTTCGTCTTCACCTGATCTTACTCTAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.11

Weight (kDa)

6.29

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24625
fragaria_vesca	FvH4_4g33120 FvH4_4g33120 FvH4_4g33120 FvH4_4g33120
malus_domestica	MD13G1016900.v1.1 MD16G1014800.v1.1
prunus_persica	Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1
pyrus_communis	pycom13g01460 pycom16g01360
rosa_chinensis	RchiOBHm_Chr4g0442171
rosa_laevigata	RLG00000006033
rosa_multiflora	Rmu_sc0010284.1_g000008
rosa_roxburghii	Rroxscaffold_5G00383080
rosa_rugosa	Rorug04G0339300 Rorug04G0339300
rosa_samantha	Rh4AG391000 Rh4BG404600 Rh4CG419600 Rh4DG397600
rosa_wichuraiana	Rw4G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	416
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	2 cut(s)	340, 375
AcsI	RAATTY	2 cut(s)	26, 706
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	19, 32, 215, 220, 572
AjuI	GAANNNNNNNTTGG	2 cut(s)	691, 723
AluBI	AGCT	4 cut(s)	251, 324, 423, 485
AluI	AGCT	4 cut(s)	251, 324, 423, 485
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	2 cut(s)	227, 474
Alw44I	GTGCAC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	2 cut(s)	164, 632
AoxI	GGCC	4 cut(s)	167, 340, 375, 629
ApaLI	GTGCAC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	248, 251
ApoI	RAATTY	2 cut(s)	26, 706
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	167, 630
AsuC2I	CCSGG	4 cut(s)	165, 166, 633, 634
AsuHPI	GGTGA	1 cut(s)	744
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	2 cut(s)	164, 632
BaeGI	GKGCMC	2 cut(s)	227, 501
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BalI	TGGCCA	2 cut(s)	342, 377
BanI	GGYRCC	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	2 cut(s)	238, 260
BccI	CCATC	3 cut(s)	156, 351, 505
BceAI	ACGGC	1 cut(s)	592
BcnI	CCSGG	4 cut(s)	165, 166, 633, 634
BcoDI	GTCTC	2 cut(s)	227, 474
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	2 cut(s)	319, 492
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	3 cut(s)	249, 252, 453
BlsI	GCNGC	3 cut(s)	250, 253, 454
Bme1390I	CCNGG	4 cut(s)	165, 166, 633, 634
BmeT110I	CYCGRG	2 cut(s)	164, 632
BmgT120I	GGNCC	2 cut(s)	167, 630
BmiI	GGNNCC	2 cut(s)	536, 726
BmrFI	CCNGG	4 cut(s)	165, 166, 633, 634
BmsI	GCATC	2 cut(s)	437, 486
BpiI	GAAGAC	1 cut(s)	741
BpmI	CTGGAG	2 cut(s)	176, 187
Bpu14I	TTCGAA	1 cut(s)	65
BpuMI	CCSGG	4 cut(s)	165, 166, 633, 634
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	4 cut(s)	164, 281, 530, 632
BsaWI	WCCGGW	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	592
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	4 cut(s)	164, 281, 530, 632
BseGI	GGATG	3 cut(s)	477, 526, 616
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	193
BseSI	GKGCMC	2 cut(s)	227, 501
BseXI	GCAGC	2 cut(s)	238, 260
BsgI	GTGCAG	2 cut(s)	237, 672
BshFI	GGCC	4 cut(s)	169, 342, 377, 631
BshNI	GGYRCC	1 cut(s)	724
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	2 cut(s)	164, 632
BsiSI	CCGG	5 cut(s)	165, 466, 593, 633, 643
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	227, 474
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	2 cut(s)	355, 461
BsnI	GGCC	4 cut(s)	169, 342, 377, 631
Bso31I	GGTCTC	1 cut(s)	474
BsoBI	CYCGRG	2 cut(s)	164, 632
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	227, 501
Bsp143I	GATC	3 cut(s)	160, 523, 757
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	4 cut(s)	169, 342, 377, 631
BspLI	GGNNCC	2 cut(s)	536, 726
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	724
BspTNI	GGTCTC	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	4 cut(s)	164, 281, 530, 632
BssMI	GATC	3 cut(s)	160, 523, 757
BssNAI	GTATAC	1 cut(s)	417
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	281
Bst1107I	GTATAC	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	102, 767
BstF5I	GGATG	3 cut(s)	477, 526, 616
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	3 cut(s)	163, 526, 760
BstMAI	GTCTC	2 cut(s)	227, 474
BstMBI	GATC	3 cut(s)	160, 523, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	383, 388, 458, 491
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	4 cut(s)	163, 164, 631, 632
BstSFI	CTRYAG	2 cut(s)	319, 492
BstSLI	GKGCMC	2 cut(s)	227, 501
BstV1I	GCAGC	2 cut(s)	238, 260
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	4 cut(s)	169, 342, 377, 631
BtsCI	GGATG	3 cut(s)	477, 526, 616
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	167, 630
Cfr9I	CCCGGG	2 cut(s)	164, 632
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	6 cut(s)	294, 443, 601, 622, 703, 721
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	2 cut(s)	102, 767
DpnI	GATC	3 cut(s)	162, 525, 759
DpnII	GATC	3 cut(s)	160, 523, 757
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	2 cut(s)	340, 375
Eco130I	CCWWGG	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	164, 632
EcoRI	GAATTC	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	6 cut(s)	297, 446, 604, 625, 706, 724
FalI	AAGNNNNNCTT	2 cut(s)	733, 765
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	6 cut(s)	293, 442, 600, 621, 702, 720
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	3 cut(s)	249, 252, 453
FokI	GGATG	3 cut(s)	464, 513, 623
Fsp4HI	GCNGC	3 cut(s)	249, 252, 453
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	3 cut(s)	249, 252, 453
GsuI	CTGGAG	2 cut(s)	176, 187
HaeIII	GGCC	4 cut(s)	169, 342, 377, 631
HapII	CCGG	5 cut(s)	165, 466, 593, 633, 643
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	6 cut(s)	297, 446, 604, 625, 706, 724
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	86
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	5 cut(s)	165, 466, 593, 633, 643
HphI	GGTGA	1 cut(s)	744
Hpy166II	GTNNAC	4 cut(s)	6, 405, 417, 499
Hpy188I	TCNGA	6 cut(s)	43, 141, 268, 348, 523, 531
Hpy188III	TCNNGA	2 cut(s)	49, 711
Hpy8I	GTNNAC	4 cut(s)	6, 405, 417, 499
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	214, 263
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	69, 210
HpyCH4V	TGCA	8 cut(s)	79, 254, 297, 461, 494, 499, 682, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	383, 388, 458, 491
HpyF3I	CTNAG	2 cut(s)	102, 767
HpySE526I	ACGT	2 cut(s)	69, 210
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	6 cut(s)	297, 446, 604, 625, 706, 724
HspAI	GCGC	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	160, 523, 757
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	2 cut(s)	238, 260
LweI	GCATC	2 cut(s)	437, 486
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	69, 210
MaeIII	GTNAC	2 cut(s)	46, 58
MalI	GATC	3 cut(s)	162, 525, 759
MboI	GATC	3 cut(s)	160, 523, 757
MboII	GAAGA	3 cut(s)	95, 114, 741
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	227, 501
MlsI	TGGCCA	2 cut(s)	342, 377
MluCI	AATT	4 cut(s)	26, 37, 215, 706
MluNI	TGGCCA	2 cut(s)	342, 377
MmeI	TCCRAC	1 cut(s)	643
Mox20I	TGGCCA	2 cut(s)	342, 377
MscI	TGGCCA	2 cut(s)	342, 377
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	348, 675
Msp20I	TGGCCA	2 cut(s)	342, 377
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	5 cut(s)	165, 466, 593, 633, 643
MspR9I	CCNGG	4 cut(s)	165, 166, 633, 634
Mva1269I	GAATGC	2 cut(s)	355, 461
MwoI	GCNNNNNNNGC	4 cut(s)	383, 388, 458, 491
NciI	CCSGG	4 cut(s)	165, 166, 633, 634
NdeII	GATC	3 cut(s)	160, 523, 757
NlaIII	CATG	6 cut(s)	297, 446, 604, 625, 706, 724
NlaIV	GGNNCC	2 cut(s)	536, 726
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PctI	GAATGC	2 cut(s)	355, 461
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	250, 253, 454
PspN4I	GGNNCC	2 cut(s)	536, 726
PspPI	GGNCC	2 cut(s)	167, 630
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	348, 675
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	249, 252, 453
Sau3AI	GATC	3 cut(s)	160, 523, 757
Sau96I	GGNCC	2 cut(s)	167, 630
ScrFI	CCNGG	4 cut(s)	165, 166, 633, 634
SduI	GDGCHC	2 cut(s)	227, 501
SfaNI	GCATC	2 cut(s)	437, 486
SfcI	CTRYAG	2 cut(s)	319, 492
SfuI	TTCGAA	1 cut(s)	65
SmaI	CCCGGG	2 cut(s)	166, 634
SmiMI	CAYNNNNRTG	2 cut(s)	348, 675
Sse9I	AATT	4 cut(s)	26, 37, 215, 706
SsiI	CCGC	1 cut(s)	453
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	163, 164, 631, 632
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	2 cut(s)	72, 213
TaqI	TCGA	1 cut(s)	65
TasI	AATT	4 cut(s)	26, 37, 215, 706
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	248, 251
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	589, 719
TspMI	CCCGGG	2 cut(s)	164, 632
TspRI	CASTG	1 cut(s)	501
VneI	GTGCAC	1 cut(s)	497
XapI	RAATTY	2 cut(s)	26, 706
XceI	RCATGY	1 cut(s)	625
XmaI	CCCGGG	2 cut(s)	164, 632
XmiI	GTMKAC	1 cut(s)	416
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.