Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006539

Physical Location & Seq

Genomic Coordinates Forward (+)

3748215 .. 3751995

Gene Structure 3781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAACAAAGTTATGGGACTCCATCTGACAACAAAGATATCTTGGATTATATCACTGCTAGCTATTTATACACAGAGGAAACAAGCCCTTGACTTCAACATGATAACAGTGCCAAACTTGAACTTGGAATTTGAGAGTGATAATTTAGAAGTCACAAGCCAAGTAACTTCCAACAACATAGCTCAGCAAGACGAAACCCCTGATCCCTCCAAGGACAGCACCACTACTTCTTCCTGTCTCACAAATCAGACAAACCTCGAACAAAATCCTTCGCCTATGTTCCTGGACTTATCACTCCAATTTAGCTCCAATGACCTCGAATTGAAGGGCATGACAGGGGAGACTAACAGTGAAATAGAAGCAGCGCCTGATTCAGAAGCAGCAATTCCAAGGGTATTCTCGTGCAACTACTGTAAGCGCAAGTTCTTTAGCTCTCAAGCATTGGGCGGACATCAGAATGCTCATAAGAGGGAGAGGACAATGGCAAAGCGTGCATTGCGGATGGGAATGTTTCCTGATCACAGGTATACTAGCTTGGCATCTCTTCCCCTACACGGTTCTTCTGCTTCTGCCTTCCGGTCTCTTGGGATCGAAGCTCACGCTGCAATGCACCAAAACATGTTGATACAACCAGACCAGAGGCTACCTGTTCCTGACACAAGAGGTGTAGCAAGGTTTCAGCAGCAAGGCTACTATGGAGTGCCGATGCCAATGCCACCAATGCCAATGTTCATGGAAGATGATGATGTGGGTATGTTTTGGCCCGGGAGCTTTCGACAGGTGGGTGAGGGAATCCGAGGTCATTTCAATGTGGATCAATATGCCCAAAATTCACGAATGATCAATTCAGGAAGGACCATGCCACCAAAAAGTAGTACAAGTTCATCATCTTCTTCACCTGATCTTACTTTAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

34.06

Weight (kDa)

6.24

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24625
fragaria_vesca	FvH4_4g33120 FvH4_4g33120 FvH4_4g33120 FvH4_4g33120
malus_domestica	MD13G1016900.v1.1 MD16G1014800.v1.1
prunus_persica	Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1
pyrus_communis	pycom13g01460 pycom16g01360
rosa_chinensis	RchiOBHm_Chr4g0442171
rosa_laevigata	RLG00000006033
rosa_multiflora	Rmu_sc0010284.1_g000008
rosa_roxburghii	Rroxscaffold_5G00383080
rosa_rugosa	Rorug04G0339300 Rorug04G0339300
rosa_samantha	Rh4AG391000 Rh4BG404600 Rh4CG419600 Rh4DG397600
rosa_wichuraiana	Rw4G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	527
AciI	CCGC	2 cut(s)	447, 499
AclWI	GGATC	3 cut(s)	197, 596, 822
AcsI	RAATTY	2 cut(s)	128, 829
AfaI	GTAC	1 cut(s)	877
AfiI	CCNNNNNNNGG	1 cut(s)	554
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	4 cut(s)	97, 121, 325, 808
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	8 cut(s)	62, 182, 306, 432, 534, 596, 771, 916
AluI	AGCT	8 cut(s)	62, 182, 306, 432, 534, 596, 771, 916
Alw26I	GTCTC	3 cut(s)	242, 335, 585
AlwI	GGATC	3 cut(s)	197, 596, 822
AlwNI	CAGNNNCTG	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	4 cut(s)	362, 380, 602, 682
ApoI	RAATTY	2 cut(s)	128, 829
AspLEI	GCGC	2 cut(s)	367, 420
AspS9I	GGNCC	2 cut(s)	762, 855
AsuC2I	CCSGG	2 cut(s)	765, 766
AsuHPI	GGTGA	2 cut(s)	797, 888
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	855
BauI	CACGAG	1 cut(s)	400
BbvI	GCAGC	4 cut(s)	374, 392, 589, 694
BccI	CCATC	2 cut(s)	30, 496
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	2 cut(s)	517, 840
BcnI	CCSGG	2 cut(s)	765, 766
BcoDI	GTCTC	3 cut(s)	242, 335, 585
BfaI	CTAG	2 cut(s)	59, 531
BfoI	RGCGCY	1 cut(s)	368
BisI	GCNGC	4 cut(s)	363, 381, 603, 683
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	4 cut(s)	364, 382, 604, 684
Bme1390I	CCNGG	3 cut(s)	284, 765, 766
Bme18I	GGWCC	1 cut(s)	855
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	2 cut(s)	762, 855
BmrFI	CCNGG	3 cut(s)	284, 765, 766
BmsI	GCATC	2 cut(s)	548, 696
BmtI	GCTAGC	1 cut(s)	62
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	2 cut(s)	765, 766
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	4 cut(s)	210, 389, 764, 796
BsaWI	WCCGGW	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse3DI	GCAATG	2 cut(s)	494, 612
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	4 cut(s)	210, 389, 764, 796
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMI	GCAATG	2 cut(s)	494, 612
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	4 cut(s)	374, 392, 589, 694
BshFI	GGCC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	2 cut(s)	577, 765
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	3 cut(s)	242, 335, 585
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	763
Bso31I	GGTCTC	1 cut(s)	585
BsoBI	CYCGRG	1 cut(s)	764
Bsp143I	GATC	6 cut(s)	202, 517, 588, 814, 840, 901
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	2 cut(s)	447, 499
BspANI	GGCC	1 cut(s)	763
BspCNI	CTCAG	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	62
BspPI	GGATC	3 cut(s)	197, 596, 822
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	2 cut(s)	494, 612
BssECI	CCNNGG	4 cut(s)	210, 389, 764, 796
BssMI	GATC	6 cut(s)	202, 517, 588, 814, 840, 901
BssNAI	GTATAC	1 cut(s)	528
BssSI	CACGAG	1 cut(s)	400
BssT1I	CCWWGG	2 cut(s)	210, 389
Bst1107I	GTATAC	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	4 cut(s)	109, 350, 413, 557
Bst6I	CTCTTC	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	60, 492
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	507
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	2 cut(s)	367, 420
BstKTI	GATC	6 cut(s)	205, 520, 591, 817, 843, 904
BstMAI	GTCTC	3 cut(s)	242, 335, 585
BstMBI	GATC	6 cut(s)	202, 517, 588, 814, 840, 901
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 496, 602, 721
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	3 cut(s)	282, 763, 764
BstV1I	GCAGC	4 cut(s)	374, 392, 589, 694
BstZ17I	GTATAC	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	763
BtsCI	GGATG	1 cut(s)	507
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	53, 114, 355
Cac8I	GCNNGC	2 cut(s)	60, 492
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	2 cut(s)	367, 420
Cfr13I	GGNCC	2 cut(s)	762, 855
Cfr9I	CCCGGG	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	876
CviAII	CATG	5 cut(s)	100, 331, 619, 733, 859
CviQI	GTAC	1 cut(s)	876
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	6 cut(s)	204, 519, 590, 816, 842, 903
DpnII	GATC	6 cut(s)	202, 517, 588, 814, 840, 901
DraI	TTTAAA	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	210, 389
Eco31I	GGTCTC	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	855
Eco88I	CYCGRG	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	210, 389
ErhI	CCWWGG	2 cut(s)	210, 389
FaeI	CATG	5 cut(s)	103, 334, 622, 736, 862
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	5 cut(s)	99, 330, 618, 732, 858
FbaI	TGATCA	2 cut(s)	517, 840
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	4 cut(s)	363, 381, 603, 683
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	4 cut(s)	363, 381, 603, 683
FspBI	CTAG	2 cut(s)	59, 531
GlaI	GCGC	2 cut(s)	366, 419
GluI	GCNGC	4 cut(s)	363, 381, 603, 683
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	763
HapII	CCGG	2 cut(s)	577, 765
HhaI	GCGC	2 cut(s)	367, 420
Hin1II	CATG	5 cut(s)	103, 334, 622, 736, 862
Hin6I	GCGC	2 cut(s)	365, 418
HinP1I	GCGC	2 cut(s)	365, 418
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	3 cut(s)	18, 371, 792
HpaII	CCGG	2 cut(s)	577, 765
HphI	GGTGA	2 cut(s)	797, 888
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	5 cut(s)	27, 249, 376, 456, 797
Hpy188III	TCNNGA	4 cut(s)	515, 653, 834, 849
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	4 cut(s)	279, 319, 583, 846
HpyCH4III	ACNGT	4 cut(s)	109, 350, 413, 557
HpyCH4V	TGCA	4 cut(s)	405, 494, 605, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 496, 602, 721
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	103, 334, 622, 736, 862
HspAI	GCGC	2 cut(s)	365, 418
Ksp22I	TGATCA	2 cut(s)	517, 840
Kzo9I	GATC	6 cut(s)	202, 517, 588, 814, 840, 901
LmnI	GCTCC	2 cut(s)	311, 768
Lsp1109I	GCAGC	4 cut(s)	374, 392, 589, 694
LweI	GCATC	2 cut(s)	548, 696
MaeI	CTAG	2 cut(s)	59, 531
MaeIII	GTNAC	2 cut(s)	151, 163
MalI	GATC	6 cut(s)	204, 519, 590, 816, 842, 903
MboI	GATC	6 cut(s)	202, 517, 588, 814, 840, 901
MboII	GAAGA	6 cut(s)	222, 536, 552, 749, 882, 885
MluCI	AATT	7 cut(s)	128, 142, 299, 320, 384, 829, 844
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	195
MseI	TTAA	1 cut(s)	911
MslI	CAYNNNNRTG	2 cut(s)	456, 807
MspI	CCGG	2 cut(s)	577, 765
MspR9I	CCNGG	3 cut(s)	284, 765, 766
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	4 cut(s)	491, 496, 602, 721
NciI	CCSGG	2 cut(s)	765, 766
NdeII	GATC	6 cut(s)	202, 517, 588, 814, 840, 901
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	5 cut(s)	103, 334, 622, 736, 862
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	622
PciI	ACATGT	1 cut(s)	618
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	371, 792
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	364, 382, 604, 684
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	762, 855
PsrI	GAACNNNNNNTAC	2 cut(s)	865, 897
PstNI	CAGNNNCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	877
RsaNI	GTAC	1 cut(s)	876
RseI	CAYNNNNRTG	2 cut(s)	456, 807
SaqAI	TTAA	1 cut(s)	911
SatI	GCNGC	4 cut(s)	363, 381, 603, 683
Sau3AI	GATC	6 cut(s)	202, 517, 588, 814, 840, 901
Sau96I	GGNCC	2 cut(s)	762, 855
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	284, 765, 766
SfaNI	GCATC	2 cut(s)	548, 696
SinI	GGWCC	1 cut(s)	855
SmaI	CCCGGG	1 cut(s)	766
SmiMI	CAYNNNNRTG	2 cut(s)	456, 807
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	7 cut(s)	128, 142, 299, 320, 384, 829, 844
SsiI	CCGC	2 cut(s)	447, 499
SspMI	CTAG	2 cut(s)	59, 531
StyD4I	CCNGG	3 cut(s)	282, 763, 764
StyI	CCWWGG	2 cut(s)	210, 389
TaaI	ACNGT	4 cut(s)	109, 350, 413, 557
TaqI	TCGA	4 cut(s)	258, 318, 591, 775
TasI	AATT	7 cut(s)	128, 142, 299, 320, 384, 829, 844
TatI	WGTACW	1 cut(s)	875
TfiI	GAWTC	2 cut(s)	371, 792
Tru1I	TTAA	1 cut(s)	911
Tru9I	TTAA	1 cut(s)	911
TscAI	CASTG	3 cut(s)	60, 114, 355
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	4 cut(s)	362, 380, 602, 682
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	17, 721, 873
TspMI	CCCGGG	1 cut(s)	764
TspRI	CASTG	3 cut(s)	60, 114, 355
VpaK11BI	GGWCC	1 cut(s)	855
XapI	RAATTY	2 cut(s)	128, 829
XceI	RCATGY	1 cut(s)	622
XmaI	CCCGGG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	2 cut(s)	59, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.